co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G39270

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
2	GO:0072722: response to amitrole	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:0048034: heme O biosynthetic process	0.00E+00
5	GO:0006616: SRP-dependent cotranslational protein targeting to membrane, translocation	0.00E+00
6	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
7	GO:0010398: xylogalacturonan metabolic process	0.00E+00
8	GO:0016102: diterpenoid biosynthetic process	0.00E+00
9	GO:0009407: toxin catabolic process	3.36E-05
10	GO:0000162: tryptophan biosynthetic process	3.46E-05
11	GO:0009058: biosynthetic process	3.86E-05
12	GO:0046283: anthocyanin-containing compound metabolic process	4.37E-05
13	GO:0006564: L-serine biosynthetic process	4.37E-05
14	GO:0046686: response to cadmium ion	5.97E-05
15	GO:0006102: isocitrate metabolic process	1.53E-04
16	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.91E-04
17	GO:0010120: camalexin biosynthetic process	1.91E-04
18	GO:0042964: thioredoxin reduction	1.91E-04
19	GO:1901657: glycosyl compound metabolic process	1.94E-04
20	GO:0009821: alkaloid biosynthetic process	2.33E-04
21	GO:0009615: response to virus	2.70E-04
22	GO:0042742: defense response to bacterium	3.69E-04
23	GO:0031204: posttranslational protein targeting to membrane, translocation	4.29E-04
24	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	4.29E-04
25	GO:0006568: tryptophan metabolic process	4.29E-04
26	GO:0010372: positive regulation of gibberellin biosynthetic process	4.29E-04
27	GO:0080026: response to indolebutyric acid	4.29E-04
28	GO:1902000: homogentisate catabolic process	4.29E-04
29	GO:0051252: regulation of RNA metabolic process	4.29E-04
30	GO:0043132: NAD transport	4.29E-04
31	GO:0006807: nitrogen compound metabolic process	4.93E-04
32	GO:0010150: leaf senescence	5.43E-04
33	GO:0006099: tricarboxylic acid cycle	5.51E-04
34	GO:0010272: response to silver ion	6.99E-04
35	GO:0009072: aromatic amino acid family metabolic process	6.99E-04
36	GO:0055074: calcium ion homeostasis	6.99E-04
37	GO:0009062: fatty acid catabolic process	6.99E-04
38	GO:0010359: regulation of anion channel activity	6.99E-04
39	GO:0044375: regulation of peroxisome size	6.99E-04
40	GO:0055114: oxidation-reduction process	8.47E-04
41	GO:0015992: proton transport	9.21E-04
42	GO:0015858: nucleoside transport	9.97E-04
43	GO:0080024: indolebutyric acid metabolic process	9.97E-04
44	GO:0000187: activation of MAPK activity	9.97E-04
45	GO:0009306: protein secretion	1.18E-03
46	GO:0010188: response to microbial phytotoxin	1.32E-03
47	GO:0006878: cellular copper ion homeostasis	1.32E-03
48	GO:0000304: response to singlet oxygen	1.68E-03
49	GO:0097428: protein maturation by iron-sulfur cluster transfer	1.68E-03
50	GO:0009851: auxin biosynthetic process	1.71E-03
51	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	2.07E-03
52	GO:0030163: protein catabolic process	2.07E-03
53	GO:0060918: auxin transport	2.07E-03
54	GO:0009228: thiamine biosynthetic process	2.07E-03
55	GO:0009972: cytidine deamination	2.07E-03
56	GO:0006561: proline biosynthetic process	2.07E-03
57	GO:0015031: protein transport	2.27E-03
58	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.49E-03
59	GO:0009082: branched-chain amino acid biosynthetic process	2.49E-03
60	GO:0009099: valine biosynthetic process	2.49E-03
61	GO:0009554: megasporogenesis	2.49E-03
62	GO:0042744: hydrogen peroxide catabolic process	2.53E-03
63	GO:0009751: response to salicylic acid	2.56E-03
64	GO:0080027: response to herbivore	2.93E-03
65	GO:0009627: systemic acquired resistance	2.93E-03
66	GO:1900056: negative regulation of leaf senescence	2.93E-03
67	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	2.93E-03
68	GO:0071669: plant-type cell wall organization or biogenesis	2.93E-03
69	GO:0006888: ER to Golgi vesicle-mediated transport	3.09E-03
70	GO:0006402: mRNA catabolic process	3.40E-03
71	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	3.40E-03
72	GO:0006499: N-terminal protein myristoylation	3.77E-03
73	GO:0022900: electron transport chain	3.88E-03
74	GO:0019430: removal of superoxide radicals	3.88E-03
75	GO:0007186: G-protein coupled receptor signaling pathway	3.88E-03
76	GO:0009097: isoleucine biosynthetic process	3.88E-03
77	GO:0010204: defense response signaling pathway, resistance gene-independent	3.88E-03
78	GO:0046685: response to arsenic-containing substance	4.40E-03
79	GO:0006783: heme biosynthetic process	4.40E-03
80	GO:0009098: leucine biosynthetic process	4.93E-03
81	GO:0006979: response to oxidative stress	5.24E-03
82	GO:0006032: chitin catabolic process	5.48E-03
83	GO:0009688: abscisic acid biosynthetic process	5.48E-03
84	GO:0043069: negative regulation of programmed cell death	5.48E-03
85	GO:0009682: induced systemic resistance	6.06E-03
86	GO:0052544: defense response by callose deposition in cell wall	6.06E-03
87	GO:0072593: reactive oxygen species metabolic process	6.06E-03
88	GO:0000272: polysaccharide catabolic process	6.06E-03
89	GO:0009636: response to toxic substance	6.26E-03
90	GO:0006790: sulfur compound metabolic process	6.66E-03
91	GO:0002213: defense response to insect	6.66E-03
92	GO:0016925: protein sumoylation	6.66E-03
93	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	6.66E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	7.28E-03
95	GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process	7.28E-03
96	GO:0010102: lateral root morphogenesis	7.28E-03
97	GO:0034605: cellular response to heat	7.91E-03
98	GO:0007031: peroxisome organization	8.57E-03
99	GO:0007030: Golgi organization	8.57E-03
100	GO:0010167: response to nitrate	8.57E-03
101	GO:0046854: phosphatidylinositol phosphorylation	8.57E-03
102	GO:0006096: glycolytic process	8.88E-03
103	GO:0045454: cell redox homeostasis	9.28E-03
104	GO:0009626: plant-type hypersensitive response	9.46E-03
105	GO:0009620: response to fungus	9.76E-03
106	GO:0005992: trehalose biosynthetic process	9.94E-03
107	GO:0045333: cellular respiration	9.94E-03
108	GO:0006874: cellular calcium ion homeostasis	1.07E-02
109	GO:0016998: cell wall macromolecule catabolic process	1.14E-02
110	GO:0009814: defense response, incompatible interaction	1.21E-02
111	GO:0010227: floral organ abscission	1.29E-02
112	GO:0009753: response to jasmonic acid	1.32E-02
113	GO:0010089: xylem development	1.37E-02
114	GO:0051028: mRNA transport	1.45E-02
115	GO:0010118: stomatal movement	1.53E-02
116	GO:0042631: cellular response to water deprivation	1.53E-02
117	GO:0010051: xylem and phloem pattern formation	1.53E-02
118	GO:0045489: pectin biosynthetic process	1.62E-02
119	GO:0006662: glycerol ether metabolic process	1.62E-02
120	GO:0048544: recognition of pollen	1.70E-02
121	GO:0010183: pollen tube guidance	1.79E-02
122	GO:0007165: signal transduction	1.84E-02
123	GO:0006635: fatty acid beta-oxidation	1.88E-02
124	GO:0009630: gravitropism	1.97E-02
125	GO:0031047: gene silencing by RNA	1.97E-02
126	GO:0010252: auxin homeostasis	2.15E-02
127	GO:0006464: cellular protein modification process	2.15E-02
128	GO:0009617: response to bacterium	2.22E-02
129	GO:0009735: response to cytokinin	2.24E-02
130	GO:0009611: response to wounding	2.57E-02
131	GO:0009826: unidimensional cell growth	2.77E-02
132	GO:0016049: cell growth	2.84E-02
133	GO:0048767: root hair elongation	3.05E-02
134	GO:0007568: aging	3.27E-02
135	GO:0010119: regulation of stomatal movement	3.27E-02
136	GO:0009631: cold acclimation	3.27E-02
137	GO:0009723: response to ethylene	3.32E-02
138	GO:0045087: innate immune response	3.49E-02
139	GO:0034599: cellular response to oxidative stress	3.60E-02
140	GO:0016192: vesicle-mediated transport	3.74E-02
141	GO:0046777: protein autophosphorylation	3.81E-02
142	GO:0006839: mitochondrial transport	3.83E-02
143	GO:0006952: defense response	3.86E-02
144	GO:0009651: response to salt stress	4.08E-02
145	GO:0051707: response to other organism	4.18E-02
146	GO:0008283: cell proliferation	4.18E-02
147	GO:0009926: auxin polar transport	4.18E-02
148	GO:0000209: protein polyubiquitination	4.30E-02
149	GO:0006855: drug transmembrane transport	4.66E-02
150	GO:0031347: regulation of defense response	4.78E-02
151	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	4.78E-02
152	GO:0000165: MAPK cascade	4.78E-02
153	GO:0009664: plant-type cell wall organization	4.90E-02
154	GO:0009846: pollen germination	4.90E-02
155	GO:0042538: hyperosmotic salinity response	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity	0.00E+00
2	GO:0016034: maleylacetoacetate isomerase activity	0.00E+00
3	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
4	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
5	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
6	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
7	GO:0080013: (E,E)-geranyllinalool synthase activity	0.00E+00
8	GO:0047844: deoxycytidine deaminase activity	0.00E+00
9	GO:0044610: FMN transmembrane transporter activity	0.00E+00
10	GO:0008495: protoheme IX farnesyltransferase activity	0.00E+00
11	GO:0004364: glutathione transferase activity	3.55E-06
12	GO:0004449: isocitrate dehydrogenase (NAD+) activity	1.47E-05
13	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	6.48E-05
14	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	6.48E-05
15	GO:0004601: peroxidase activity	1.76E-04
16	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	1.91E-04
17	GO:0010013: N-1-naphthylphthalamic acid binding	1.91E-04
18	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.91E-04
19	GO:0000824: inositol tetrakisphosphate 3-kinase activity	1.91E-04
20	GO:0033984: indole-3-glycerol-phosphate lyase activity	1.91E-04
21	GO:0047326: inositol tetrakisphosphate 5-kinase activity	1.91E-04
22	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	1.91E-04
23	GO:0048037: cofactor binding	1.91E-04
24	GO:0015230: FAD transmembrane transporter activity	1.91E-04
25	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	1.91E-04
26	GO:0016844: strictosidine synthase activity	2.78E-04
27	GO:0004743: pyruvate kinase activity	2.78E-04
28	GO:0030955: potassium ion binding	2.78E-04
29	GO:0052739: phosphatidylserine 1-acylhydrolase activity	4.29E-04
30	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	4.29E-04
31	GO:0004617: phosphoglycerate dehydrogenase activity	4.29E-04
32	GO:0051724: NAD transporter activity	4.29E-04
33	GO:0008428: ribonuclease inhibitor activity	4.29E-04
34	GO:0004775: succinate-CoA ligase (ADP-forming) activity	4.29E-04
35	GO:0019172: glyoxalase III activity	4.29E-04
36	GO:0008517: folic acid transporter activity	4.29E-04
37	GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity	4.29E-04
38	GO:0004640: phosphoribosylanthranilate isomerase activity	4.29E-04
39	GO:0004776: succinate-CoA ligase (GDP-forming) activity	4.29E-04
40	GO:0004566: beta-glucuronidase activity	4.29E-04
41	GO:0015228: coenzyme A transmembrane transporter activity	4.29E-04
42	GO:0008422: beta-glucosidase activity	5.83E-04
43	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.99E-04
44	GO:0005198: structural molecule activity	8.31E-04
45	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	9.97E-04
46	GO:0052655: L-valine transaminase activity	9.97E-04
47	GO:0052656: L-isoleucine transaminase activity	9.97E-04
48	GO:0004165: dodecenoyl-CoA delta-isomerase activity	9.97E-04
49	GO:0052654: L-leucine transaminase activity	9.97E-04
50	GO:0000287: magnesium ion binding	1.02E-03
51	GO:0004834: tryptophan synthase activity	1.32E-03
52	GO:0005086: ARF guanyl-nucleotide exchange factor activity	1.32E-03
53	GO:0004084: branched-chain-amino-acid transaminase activity	1.32E-03
54	GO:0016820: hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	1.32E-03
55	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.32E-03
56	GO:0004031: aldehyde oxidase activity	1.32E-03
57	GO:0050302: indole-3-acetaldehyde oxidase activity	1.32E-03
58	GO:0004930: G-protein coupled receptor activity	1.32E-03
59	GO:0010279: indole-3-acetic acid amido synthetase activity	1.32E-03
60	GO:0004659: prenyltransferase activity	1.32E-03
61	GO:0004791: thioredoxin-disulfide reductase activity	1.59E-03
62	GO:0008374: O-acyltransferase activity	1.68E-03
63	GO:0008948: oxaloacetate decarboxylase activity	1.68E-03
64	GO:0080122: AMP transmembrane transporter activity	1.68E-03
65	GO:0031386: protein tag	1.68E-03
66	GO:0031593: polyubiquitin binding	2.07E-03
67	GO:0035252: UDP-xylosyltransferase activity	2.07E-03
68	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.34E-03
69	GO:0015217: ADP transmembrane transporter activity	2.49E-03
70	GO:0004126: cytidine deaminase activity	2.49E-03
71	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.49E-03
72	GO:0005347: ATP transmembrane transporter activity	2.49E-03
73	GO:0004656: procollagen-proline 4-dioxygenase activity	2.49E-03
74	GO:0008565: protein transporter activity	2.69E-03
75	GO:0005507: copper ion binding	2.79E-03
76	GO:0008121: ubiquinol-cytochrome-c reductase activity	2.93E-03
77	GO:0043295: glutathione binding	2.93E-03
78	GO:0102483: scopolin beta-glucosidase activity	3.09E-03
79	GO:0004714: transmembrane receptor protein tyrosine kinase activity	3.40E-03
80	GO:0004311: farnesyltranstransferase activity	3.40E-03
81	GO:0004708: MAP kinase kinase activity	3.40E-03
82	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.88E-03
83	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.33E-03
84	GO:0004568: chitinase activity	5.48E-03
85	GO:0008794: arsenate reductase (glutaredoxin) activity	6.06E-03
86	GO:0004177: aminopeptidase activity	6.06E-03
87	GO:0008559: xenobiotic-transporting ATPase activity	6.06E-03
88	GO:0003824: catalytic activity	6.08E-03
89	GO:0051287: NAD binding	6.74E-03
90	GO:0016301: kinase activity	6.90E-03
91	GO:0004022: alcohol dehydrogenase (NAD) activity	7.28E-03
92	GO:0031624: ubiquitin conjugating enzyme binding	7.91E-03
93	GO:0004190: aspartic-type endopeptidase activity	8.57E-03
94	GO:0008061: chitin binding	8.57E-03
95	GO:0005217: intracellular ligand-gated ion channel activity	8.57E-03
96	GO:0004970: ionotropic glutamate receptor activity	8.57E-03
97	GO:0031418: L-ascorbic acid binding	9.94E-03
98	GO:0015035: protein disulfide oxidoreductase activity	1.10E-02
99	GO:0010333: terpene synthase activity	1.14E-02
100	GO:0020037: heme binding	1.14E-02
101	GO:0004298: threonine-type endopeptidase activity	1.14E-02
102	GO:0009055: electron carrier activity	1.32E-02
103	GO:0047134: protein-disulfide reductase activity	1.45E-02
104	GO:0030170: pyridoxal phosphate binding	1.49E-02
105	GO:0001085: RNA polymerase II transcription factor binding	1.62E-02
106	GO:0005199: structural constituent of cell wall	1.62E-02
107	GO:0004518: nuclease activity	1.97E-02
108	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.06E-02
109	GO:0016597: amino acid binding	2.34E-02
110	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.64E-02
111	GO:0004683: calmodulin-dependent protein kinase activity	2.74E-02
112	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.95E-02
113	GO:0043531: ADP binding	3.15E-02
114	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.27E-02
115	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.27E-02
116	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.53E-02
117	GO:0003993: acid phosphatase activity	3.60E-02
118	GO:0051537: 2 iron, 2 sulfur cluster binding	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0031205: endoplasmic reticulum Sec complex	0.00E+00
2	GO:0005784: Sec61 translocon complex	0.00E+00
3	GO:0005829: cytosol	3.72E-06
4	GO:0016442: RISC complex	1.91E-04
5	GO:0005886: plasma membrane	3.17E-04
6	GO:0005774: vacuolar membrane	6.38E-04
7	GO:0005773: vacuole	6.81E-04
8	GO:0046861: glyoxysomal membrane	6.99E-04
9	GO:0009530: primary cell wall	6.99E-04
10	GO:0016471: vacuolar proton-transporting V-type ATPase complex	1.32E-03
11	GO:0005794: Golgi apparatus	1.56E-03
12	GO:0030127: COPII vesicle coat	2.07E-03
13	GO:0005778: peroxisomal membrane	2.34E-03
14	GO:0030173: integral component of Golgi membrane	2.49E-03
15	GO:0031982: vesicle	3.40E-03
16	GO:0009514: glyoxysome	3.88E-03
17	GO:0019773: proteasome core complex, alpha-subunit complex	3.88E-03
18	GO:0005779: integral component of peroxisomal membrane	3.88E-03
19	GO:0010494: cytoplasmic stress granule	4.40E-03
20	GO:0031901: early endosome membrane	4.40E-03
21	GO:0031090: organelle membrane	4.40E-03
22	GO:0005765: lysosomal membrane	6.06E-03
23	GO:0048471: perinuclear region of cytoplasm	6.06E-03
24	GO:0000502: proteasome complex	7.50E-03
25	GO:0005777: peroxisome	7.73E-03
26	GO:0005750: mitochondrial respiratory chain complex III	7.91E-03
27	GO:0005635: nuclear envelope	8.04E-03
28	GO:0005758: mitochondrial intermembrane space	9.94E-03
29	GO:0005783: endoplasmic reticulum	1.00E-02
30	GO:0070469: respiratory chain	1.07E-02
31	GO:0005839: proteasome core complex	1.14E-02
32	GO:0016592: mediator complex	1.97E-02
33	GO:0030529: intracellular ribonucleoprotein complex	2.44E-02
34	GO:0000932: P-body	2.44E-02
35	GO:0005788: endoplasmic reticulum lumen	2.54E-02
36	GO:0005667: transcription factor complex	2.64E-02
37	GO:0000151: ubiquitin ligase complex	2.95E-02
38	GO:0005643: nuclear pore	2.95E-02
39	GO:0005737: cytoplasm	3.25E-02
40	GO:0000325: plant-type vacuole	3.27E-02
41	GO:0031977: thylakoid lumen	3.94E-02
42	GO:0090406: pollen tube	4.18E-02
43	GO:0048046: apoplast	4.64E-02
44	GO:0005743: mitochondrial inner membrane	4.86E-02