Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G38570

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0046486: glycerolipid metabolic process0.00E+00
2GO:0006907: pinocytosis0.00E+00
3GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
4GO:0042794: rRNA transcription from plastid promoter0.00E+00
5GO:0045014: negative regulation of transcription by glucose0.00E+00
6GO:0070455: positive regulation of heme biosynthetic process0.00E+00
7GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA0.00E+00
8GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway5.97E-05
9GO:0007050: cell cycle arrest1.45E-04
10GO:0051013: microtubule severing2.16E-04
11GO:0045786: negative regulation of cell cycle2.16E-04
12GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic2.16E-04
13GO:0010070: zygote asymmetric cell division2.16E-04
14GO:0090063: positive regulation of microtubule nucleation2.16E-04
15GO:0010583: response to cyclopentenone2.25E-04
16GO:0043039: tRNA aminoacylation4.81E-04
17GO:0033566: gamma-tubulin complex localization4.81E-04
18GO:0010069: zygote asymmetric cytokinesis in embryo sac4.81E-04
19GO:0006650: glycerophospholipid metabolic process4.81E-04
20GO:0061062: regulation of nematode larval development4.81E-04
21GO:0009451: RNA modification7.34E-04
22GO:0009825: multidimensional cell growth7.34E-04
23GO:0042780: tRNA 3'-end processing7.83E-04
24GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic7.83E-04
25GO:0034090: maintenance of meiotic sister chromatid cohesion7.83E-04
26GO:0046168: glycerol-3-phosphate catabolic process7.83E-04
27GO:0006518: peptide metabolic process7.83E-04
28GO:0045017: glycerolipid biosynthetic process1.12E-03
29GO:0006072: glycerol-3-phosphate metabolic process1.12E-03
30GO:0033014: tetrapyrrole biosynthetic process1.12E-03
31GO:0009956: radial pattern formation1.48E-03
32GO:0009958: positive gravitropism1.76E-03
33GO:0009616: virus induced gene silencing1.89E-03
34GO:0035194: posttranscriptional gene silencing by RNA2.33E-03
35GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity2.33E-03
36GO:0042793: transcription from plastid promoter2.33E-03
37GO:0009639: response to red or far red light2.62E-03
38GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity2.80E-03
39GO:0009942: longitudinal axis specification2.80E-03
40GO:0006468: protein phosphorylation3.15E-03
41GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway3.30E-03
42GO:0009610: response to symbiotic fungus3.30E-03
43GO:0015995: chlorophyll biosynthetic process3.67E-03
44GO:0048564: photosystem I assembly3.82E-03
45GO:0045292: mRNA cis splicing, via spliceosome3.82E-03
46GO:0042255: ribosome assembly3.82E-03
47GO:0006353: DNA-templated transcription, termination3.82E-03
48GO:0009832: plant-type cell wall biogenesis4.27E-03
49GO:0007389: pattern specification process4.38E-03
50GO:0007186: G-protein coupled receptor signaling pathway4.38E-03
51GO:0032544: plastid translation4.38E-03
52GO:0006811: ion transport4.48E-03
53GO:0000373: Group II intron splicing4.95E-03
54GO:0048589: developmental growth4.95E-03
55GO:0006783: heme biosynthetic process4.95E-03
56GO:0010018: far-red light signaling pathway5.56E-03
57GO:1900865: chloroplast RNA modification5.56E-03
58GO:0048829: root cap development6.18E-03
59GO:0010192: mucilage biosynthetic process6.18E-03
60GO:0006782: protoporphyrinogen IX biosynthetic process6.18E-03
61GO:0009926: auxin polar transport6.63E-03
62GO:0016485: protein processing6.84E-03
63GO:0048229: gametophyte development6.84E-03
64GO:0008285: negative regulation of cell proliferation6.84E-03
65GO:0009073: aromatic amino acid family biosynthetic process6.84E-03
66GO:0009658: chloroplast organization7.01E-03
67GO:0010152: pollen maturation7.51E-03
68GO:0009416: response to light stimulus8.18E-03
69GO:0009767: photosynthetic electron transport chain8.22E-03
70GO:0010588: cotyledon vascular tissue pattern formation8.22E-03
71GO:0010540: basipetal auxin transport8.94E-03
72GO:0006364: rRNA processing8.94E-03
73GO:0009933: meristem structural organization8.94E-03
74GO:0080188: RNA-directed DNA methylation9.69E-03
75GO:0009793: embryo development ending in seed dormancy1.04E-02
76GO:0009833: plant-type primary cell wall biogenesis1.05E-02
77GO:0042753: positive regulation of circadian rhythm1.05E-02
78GO:0006418: tRNA aminoacylation for protein translation1.21E-02
79GO:0006874: cellular calcium ion homeostasis1.21E-02
80GO:0043622: cortical microtubule organization1.21E-02
81GO:0009624: response to nematode1.28E-02
82GO:0006306: DNA methylation1.29E-02
83GO:0003333: amino acid transmembrane transport1.29E-02
84GO:0051726: regulation of cell cycle1.35E-02
85GO:0016226: iron-sulfur cluster assembly1.37E-02
86GO:0009686: gibberellin biosynthetic process1.46E-02
87GO:0048443: stamen development1.55E-02
88GO:0006284: base-excision repair1.55E-02
89GO:0010091: trichome branching1.55E-02
90GO:0000226: microtubule cytoskeleton organization1.74E-02
91GO:0000271: polysaccharide biosynthetic process1.74E-02
92GO:0045489: pectin biosynthetic process1.83E-02
93GO:0010305: leaf vascular tissue pattern formation1.83E-02
94GO:0008654: phospholipid biosynthetic process2.02E-02
95GO:0009791: post-embryonic development2.02E-02
96GO:0002229: defense response to oomycetes2.12E-02
97GO:0032502: developmental process2.23E-02
98GO:0031047: gene silencing by RNA2.23E-02
99GO:0009734: auxin-activated signaling pathway2.33E-02
100GO:0010252: auxin homeostasis2.44E-02
101GO:0000910: cytokinesis2.65E-02
102GO:0016126: sterol biosynthetic process2.76E-02
103GO:0010027: thylakoid membrane organization2.76E-02
104GO:0009627: systemic acquired resistance2.99E-02
105GO:0006974: cellular response to DNA damage stimulus2.99E-02
106GO:0010411: xyloglucan metabolic process3.10E-02
107GO:0030244: cellulose biosynthetic process3.34E-02
108GO:0051301: cell division3.46E-02
109GO:0007049: cell cycle3.82E-02
110GO:0006865: amino acid transport3.82E-02
111GO:0016051: carbohydrate biosynthetic process3.95E-02
112GO:0030001: metal ion transport4.33E-02
113GO:0016567: protein ubiquitination4.62E-02
114GO:0006508: proteolysis4.70E-02
115GO:0010114: response to red light4.73E-02
116GO:0051707: response to other organism4.73E-02
117GO:0042546: cell wall biogenesis4.86E-02
RankGO TermAdjusted P value
1GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
2GO:0098519: nucleotide phosphatase activity, acting on free nucleotides0.00E+00
3GO:0047807: cytokinin 7-beta-glucosyltransferase activity2.16E-04
4GO:0004831: tyrosine-tRNA ligase activity2.16E-04
5GO:0008568: microtubule-severing ATPase activity2.16E-04
6GO:0080062: cytokinin 9-beta-glucosyltransferase activity2.16E-04
7GO:0004047: aminomethyltransferase activity4.81E-04
8GO:0004109: coproporphyrinogen oxidase activity4.81E-04
9GO:0008805: carbon-monoxide oxygenase activity4.81E-04
10GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity7.83E-04
11GO:0016707: gibberellin 3-beta-dioxygenase activity7.83E-04
12GO:0042781: 3'-tRNA processing endoribonuclease activity7.83E-04
13GO:0010011: auxin binding1.48E-03
14GO:0010328: auxin influx transmembrane transporter activity1.48E-03
15GO:0043495: protein anchor1.48E-03
16GO:0004930: G-protein coupled receptor activity1.48E-03
17GO:0008725: DNA-3-methyladenine glycosylase activity1.89E-03
18GO:0019901: protein kinase binding2.03E-03
19GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity2.33E-03
20GO:0030332: cyclin binding2.33E-03
21GO:0003860: 3-hydroxyisobutyryl-CoA hydrolase activity2.33E-03
22GO:0003724: RNA helicase activity4.38E-03
23GO:0004222: metalloendopeptidase activity4.48E-03
24GO:0016301: kinase activity5.17E-03
25GO:0009672: auxin:proton symporter activity5.56E-03
26GO:0004674: protein serine/threonine kinase activity6.71E-03
27GO:0010329: auxin efflux transmembrane transporter activity8.22E-03
28GO:0004535: poly(A)-specific ribonuclease activity8.94E-03
29GO:0005217: intracellular ligand-gated ion channel activity9.69E-03
30GO:0004970: ionotropic glutamate receptor activity9.69E-03
31GO:0008134: transcription factor binding1.12E-02
32GO:0004871: signal transducer activity1.23E-02
33GO:0004540: ribonuclease activity1.29E-02
34GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity1.37E-02
35GO:0016760: cellulose synthase (UDP-forming) activity1.46E-02
36GO:0030570: pectate lyase activity1.46E-02
37GO:0003727: single-stranded RNA binding1.55E-02
38GO:0019843: rRNA binding1.60E-02
39GO:0004812: aminoacyl-tRNA ligase activity1.64E-02
40GO:0004519: endonuclease activity1.68E-02
41GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity1.83E-02
42GO:0010181: FMN binding1.93E-02
43GO:0016762: xyloglucan:xyloglucosyl transferase activity2.12E-02
44GO:0016759: cellulose synthase activity2.44E-02
45GO:0008237: metallopeptidase activity2.54E-02
46GO:0016798: hydrolase activity, acting on glycosyl bonds3.10E-02
47GO:0004693: cyclin-dependent protein serine/threonine kinase activity3.58E-02
48GO:0046983: protein dimerization activity3.60E-02
49GO:0004672: protein kinase activity4.13E-02
50GO:0004712: protein serine/threonine/tyrosine kinase activity4.20E-02
RankGO TermAdjusted P value
1GO:0043224: nuclear SCF ubiquitin ligase complex0.00E+00
2GO:0009331: glycerol-3-phosphate dehydrogenase complex1.12E-03
3GO:0000930: gamma-tubulin complex1.48E-03
4GO:0009507: chloroplast1.99E-03
5GO:0042644: chloroplast nucleoid4.95E-03
6GO:0000922: spindle pole4.95E-03
7GO:0055028: cortical microtubule6.18E-03
8GO:0005938: cell cortex8.22E-03
9GO:0009536: plastid1.00E-02
10GO:0005875: microtubule associated complex1.05E-02
11GO:0000419: DNA-directed RNA polymerase V complex1.05E-02
12GO:0043234: protein complex1.05E-02
13GO:0009570: chloroplast stroma1.30E-02
14GO:0043231: intracellular membrane-bounded organelle1.71E-02
15GO:0016592: mediator complex2.23E-02
16GO:0071944: cell periphery2.33E-02
17GO:0009707: chloroplast outer membrane3.34E-02
18GO:0005874: microtubule4.09E-02
19GO:0090406: pollen tube4.73E-02
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Gene type



Gene DE type