co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G38140

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0005996: monosaccharide metabolic process	0.00E+00
2	GO:0006412: translation	4.99E-10
3	GO:0042254: ribosome biogenesis	7.04E-10
4	GO:0015995: chlorophyll biosynthetic process	1.41E-05
5	GO:0032544: plastid translation	1.66E-05
6	GO:0009773: photosynthetic electron transport in photosystem I	3.76E-05
7	GO:0006729: tetrahydrobiopterin biosynthetic process	9.72E-05
8	GO:0009735: response to cytokinin	2.03E-04
9	GO:0071484: cellular response to light intensity	2.48E-04
10	GO:0006546: glycine catabolic process	3.33E-04
11	GO:0019464: glycine decarboxylation via glycine cleavage system	3.33E-04
12	GO:0045727: positive regulation of translation	3.33E-04
13	GO:0006461: protein complex assembly	4.25E-04
14	GO:0009772: photosynthetic electron transport in photosystem II	7.28E-04
15	GO:0009657: plastid organization	9.50E-04
16	GO:0010206: photosystem II repair	1.07E-03
17	GO:0006783: heme biosynthetic process	1.07E-03
18	GO:0006754: ATP biosynthetic process	1.07E-03
19	GO:0006782: protoporphyrinogen IX biosynthetic process	1.31E-03
20	GO:0000272: polysaccharide catabolic process	1.44E-03
21	GO:0018119: peptidyl-cysteine S-nitrosylation	1.44E-03
22	GO:0010207: photosystem II assembly	1.86E-03
23	GO:0051017: actin filament bundle assembly	2.32E-03
24	GO:0000027: ribosomal large subunit assembly	2.32E-03
25	GO:0061077: chaperone-mediated protein folding	2.64E-03
26	GO:0035428: hexose transmembrane transport	2.80E-03
27	GO:0009658: chloroplast organization	3.42E-03
28	GO:0000413: protein peptidyl-prolyl isomerization	3.50E-03
29	GO:0042631: cellular response to water deprivation	3.50E-03
30	GO:0046323: glucose import	3.69E-03
31	GO:0015986: ATP synthesis coupled proton transport	3.87E-03
32	GO:0000302: response to reactive oxygen species	4.26E-03
33	GO:0045454: cell redox homeostasis	5.05E-03
34	GO:0006810: transport	6.62E-03
35	GO:0034599: cellular response to oxidative stress	7.99E-03
36	GO:0006364: rRNA processing	1.14E-02
37	GO:0009793: embryo development ending in seed dormancy	1.18E-02
38	GO:0009740: gibberellic acid mediated signaling pathway	1.40E-02
39	GO:0042744: hydrogen peroxide catabolic process	1.88E-02
40	GO:0006633: fatty acid biosynthetic process	2.02E-02
41	GO:0007623: circadian rhythm	2.16E-02
42	GO:0042742: defense response to bacterium	2.25E-02
43	GO:0009739: response to gibberellin	2.34E-02
44	GO:0010468: regulation of gene expression	2.45E-02
45	GO:0009409: response to cold	3.04E-02
46	GO:0046686: response to cadmium ion	3.50E-02
47	GO:0015979: photosynthesis	3.77E-02
48	GO:0055114: oxidation-reduction process	4.41E-02

Rank	GO Term	Adjusted P value
1	GO:0046408: chlorophyll synthetase activity	0.00E+00
2	GO:0004318: enoyl-[acyl-carrier-protein] reductase (NADH) activity	0.00E+00
3	GO:0033728: divinyl chlorophyllide a 8-vinyl-reductase activity	0.00E+00
4	GO:0016631: enoyl-[acyl-carrier-protein] reductase activity	0.00E+00
5	GO:0051744: 3,8-divinyl protochlorophyllide a 8-vinyl reductase activity	0.00E+00
6	GO:0019843: rRNA binding	5.58E-15
7	GO:0003735: structural constituent of ribosome	2.02E-12
8	GO:0005528: FK506 binding	7.45E-09
9	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.95E-08
10	GO:0004853: uroporphyrinogen decarboxylase activity	3.90E-05
11	GO:0008124: 4-alpha-hydroxytetrahydrobiopterin dehydratase activity	3.90E-05
12	GO:0010297: heteropolysaccharide binding	9.72E-05
13	GO:0008097: 5S rRNA binding	2.48E-04
14	GO:0004375: glycine dehydrogenase (decarboxylating) activity	2.48E-04
15	GO:0004130: cytochrome-c peroxidase activity	5.22E-04
16	GO:0051920: peroxiredoxin activity	6.22E-04
17	GO:0016209: antioxidant activity	8.37E-04
18	GO:0004033: aldo-keto reductase (NADP) activity	8.37E-04
19	GO:0030234: enzyme regulator activity	1.31E-03
20	GO:0004601: peroxidase activity	3.42E-03
21	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	3.69E-03
22	GO:0005355: glucose transmembrane transporter activity	3.87E-03
23	GO:0050662: coenzyme binding	3.87E-03
24	GO:0051015: actin filament binding	4.65E-03
25	GO:0051537: 2 iron, 2 sulfur cluster binding	9.77E-03
26	GO:0003723: RNA binding	1.58E-02
27	GO:0015144: carbohydrate transmembrane transporter activity	1.95E-02
28	GO:0005351: sugar:proton symporter activity	2.12E-02
29	GO:0016491: oxidoreductase activity	2.96E-02
30	GO:0009055: electron carrier activity	4.76E-02

Rank	GO Term	Adjusted P value
1	GO:0005835: fatty acid synthase complex	0.00E+00
2	GO:0009507: chloroplast	1.69E-37
3	GO:0009941: chloroplast envelope	2.07E-26
4	GO:0009535: chloroplast thylakoid membrane	5.95E-23
5	GO:0009579: thylakoid	1.29E-22
6	GO:0009570: chloroplast stroma	1.02E-18
7	GO:0009534: chloroplast thylakoid	3.27E-17
8	GO:0009543: chloroplast thylakoid lumen	5.36E-17
9	GO:0031977: thylakoid lumen	8.07E-15
10	GO:0005840: ribosome	1.62E-12
11	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.10E-05
12	GO:0030095: chloroplast photosystem II	5.95E-05
13	GO:0000427: plastid-encoded plastid RNA polymerase complex	9.72E-05
14	GO:0009706: chloroplast inner membrane	9.97E-05
15	GO:0005960: glycine cleavage complex	2.48E-04
16	GO:0010319: stromule	3.00E-04
17	GO:0009544: chloroplast ATP synthase complex	3.33E-04
18	GO:0015934: large ribosomal subunit	5.06E-04
19	GO:0031969: chloroplast membrane	5.07E-04
20	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	5.22E-04
21	GO:0009533: chloroplast stromal thylakoid	7.28E-04
22	GO:0000312: plastid small ribosomal subunit	1.86E-03
23	GO:0016020: membrane	2.41E-03
24	GO:0015935: small ribosomal subunit	2.64E-03
25	GO:0015629: actin cytoskeleton	2.97E-03
26	GO:0009523: photosystem II	4.06E-03
27	GO:0022625: cytosolic large ribosomal subunit	4.45E-03
28	GO:0009707: chloroplast outer membrane	6.58E-03
29	GO:0005856: cytoskeleton	1.00E-02
30	GO:0022626: cytosolic ribosome	1.06E-02
31	GO:0010287: plastoglobule	1.65E-02
32	GO:0022627: cytosolic small ribosomal subunit	2.63E-02