Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G37860

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0070979: protein K11-linked ubiquitination0.00E+00
2GO:0010059: positive regulation of atrichoblast fate specification0.00E+00
3GO:0000455: enzyme-directed rRNA pseudouridine synthesis0.00E+00
4GO:0090071: negative regulation of ribosome biogenesis0.00E+00
5GO:0046838: phosphorylated carbohydrate dephosphorylation0.00E+00
6GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
7GO:0007638: mechanosensory behavior0.00E+00
8GO:1903224: regulation of endodermal cell differentiation0.00E+00
9GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
10GO:0080127: fruit septum development0.00E+00
11GO:0006573: valine metabolic process0.00E+00
12GO:0045184: establishment of protein localization0.00E+00
13GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)0.00E+00
14GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process0.00E+00
15GO:0070125: mitochondrial translational elongation0.00E+00
16GO:0046620: regulation of organ growth4.67E-05
17GO:1900865: chloroplast RNA modification1.14E-04
18GO:0010239: chloroplast mRNA processing1.15E-04
19GO:0009416: response to light stimulus3.91E-04
20GO:0040008: regulation of growth4.09E-04
21GO:0016554: cytidine to uridine editing4.15E-04
22GO:0009451: RNA modification4.73E-04
23GO:0042372: phylloquinone biosynthetic process5.51E-04
24GO:0009082: branched-chain amino acid biosynthetic process5.51E-04
25GO:0009099: valine biosynthetic process5.51E-04
26GO:0030488: tRNA methylation5.51E-04
27GO:0034757: negative regulation of iron ion transport6.19E-04
28GO:0042659: regulation of cell fate specification6.19E-04
29GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process6.19E-04
30GO:0009090: homoserine biosynthetic process6.19E-04
31GO:0090558: plant epidermis development6.19E-04
32GO:0043266: regulation of potassium ion transport6.19E-04
33GO:0010063: positive regulation of trichoblast fate specification6.19E-04
34GO:0006551: leucine metabolic process6.19E-04
35GO:2000021: regulation of ion homeostasis6.19E-04
36GO:0035987: endodermal cell differentiation6.19E-04
37GO:0015904: tetracycline transport6.19E-04
38GO:0009097: isoleucine biosynthetic process1.06E-03
39GO:0010087: phloem or xylem histogenesis1.06E-03
40GO:0009658: chloroplast organization1.09E-03
41GO:0010305: leaf vascular tissue pattern formation1.16E-03
42GO:0009733: response to auxin1.25E-03
43GO:0048507: meristem development1.27E-03
44GO:0000373: Group II intron splicing1.27E-03
45GO:0010024: phytochromobilin biosynthetic process1.33E-03
46GO:0060359: response to ammonium ion1.33E-03
47GO:0048255: mRNA stabilization1.33E-03
48GO:1900871: chloroplast mRNA modification1.33E-03
49GO:0010271: regulation of chlorophyll catabolic process1.33E-03
50GO:0006432: phenylalanyl-tRNA aminoacylation1.33E-03
51GO:0018026: peptidyl-lysine monomethylation1.33E-03
52GO:0080009: mRNA methylation1.33E-03
53GO:0009786: regulation of asymmetric cell division1.33E-03
54GO:0031648: protein destabilization1.33E-03
55GO:0001682: tRNA 5'-leader removal1.33E-03
56GO:0006568: tryptophan metabolic process1.33E-03
57GO:0009098: leucine biosynthetic process1.51E-03
58GO:0045910: negative regulation of DNA recombination2.19E-03
59GO:0033591: response to L-ascorbic acid2.19E-03
60GO:0090708: specification of plant organ axis polarity2.19E-03
61GO:0080117: secondary growth2.19E-03
62GO:0031145: anaphase-promoting complex-dependent catabolic process2.19E-03
63GO:0006788: heme oxidation2.19E-03
64GO:0051604: protein maturation2.19E-03
65GO:0043157: response to cation stress2.19E-03
66GO:0071398: cellular response to fatty acid2.19E-03
67GO:0030029: actin filament-based process2.19E-03
68GO:0009734: auxin-activated signaling pathway2.28E-03
69GO:0010582: floral meristem determinacy2.34E-03
70GO:0010027: thylakoid membrane organization2.45E-03
71GO:0009725: response to hormone2.66E-03
72GO:0010207: photosystem II assembly3.00E-03
73GO:0009102: biotin biosynthetic process3.19E-03
74GO:0030071: regulation of mitotic metaphase/anaphase transition3.19E-03
75GO:0051639: actin filament network formation3.19E-03
76GO:0010306: rhamnogalacturonan II biosynthetic process3.19E-03
77GO:0044211: CTP salvage3.19E-03
78GO:0019048: modulation by virus of host morphology or physiology3.19E-03
79GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity3.19E-03
80GO:0046739: transport of virus in multicellular host3.19E-03
81GO:2000904: regulation of starch metabolic process3.19E-03
82GO:0042989: sequestering of actin monomers3.19E-03
83GO:0031048: chromatin silencing by small RNA3.19E-03
84GO:1990019: protein storage vacuole organization3.19E-03
85GO:0009067: aspartate family amino acid biosynthetic process3.19E-03
86GO:0010371: regulation of gibberellin biosynthetic process3.19E-03
87GO:0010071: root meristem specification3.19E-03
88GO:0051513: regulation of monopolar cell growth3.19E-03
89GO:0007231: osmosensory signaling pathway3.19E-03
90GO:0000160: phosphorelay signal transduction system3.67E-03
91GO:0051017: actin filament bundle assembly4.18E-03
92GO:0005992: trehalose biosynthetic process4.18E-03
93GO:0051764: actin crosslink formation4.30E-03
94GO:0042274: ribosomal small subunit biogenesis4.30E-03
95GO:0030104: water homeostasis4.30E-03
96GO:0033500: carbohydrate homeostasis4.30E-03
97GO:0051567: histone H3-K9 methylation4.30E-03
98GO:0008295: spermidine biosynthetic process4.30E-03
99GO:0044206: UMP salvage4.30E-03
100GO:0010431: seed maturation5.08E-03
101GO:0009845: seed germination5.31E-03
102GO:0010158: abaxial cell fate specification5.52E-03
103GO:0032876: negative regulation of DNA endoreduplication5.52E-03
104GO:0080110: sporopollenin biosynthetic process5.52E-03
105GO:0016131: brassinosteroid metabolic process5.52E-03
106GO:0030041: actin filament polymerization5.52E-03
107GO:0009696: salicylic acid metabolic process5.52E-03
108GO:0048497: maintenance of floral organ identity5.52E-03
109GO:0009107: lipoate biosynthetic process5.52E-03
110GO:0016123: xanthophyll biosynthetic process5.52E-03
111GO:0009790: embryo development5.97E-03
112GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway6.37E-03
113GO:0009926: auxin polar transport6.46E-03
114GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway6.85E-03
115GO:0009959: negative gravitropism6.85E-03
116GO:0009913: epidermal cell differentiation6.85E-03
117GO:1902456: regulation of stomatal opening6.85E-03
118GO:0042793: transcription from plastid promoter6.85E-03
119GO:0048831: regulation of shoot system development6.85E-03
120GO:0010190: cytochrome b6f complex assembly6.85E-03
121GO:0033365: protein localization to organelle6.85E-03
122GO:0003006: developmental process involved in reproduction6.85E-03
123GO:0006206: pyrimidine nucleobase metabolic process6.85E-03
124GO:0016458: gene silencing6.85E-03
125GO:0008033: tRNA processing7.76E-03
126GO:2000067: regulation of root morphogenesis8.28E-03
127GO:0017148: negative regulation of translation8.28E-03
128GO:0048509: regulation of meristem development8.28E-03
129GO:1901259: chloroplast rRNA processing8.28E-03
130GO:0009088: threonine biosynthetic process8.28E-03
131GO:0009793: embryo development ending in seed dormancy9.02E-03
132GO:0007166: cell surface receptor signaling pathway9.45E-03
133GO:0009736: cytokinin-activated signaling pathway9.47E-03
134GO:0006955: immune response9.81E-03
135GO:0010098: suspensor development9.81E-03
136GO:0010050: vegetative phase change9.81E-03
137GO:0048437: floral organ development9.81E-03
138GO:0051510: regulation of unidimensional cell growth9.81E-03
139GO:0009909: regulation of flower development1.08E-02
140GO:0010583: response to cyclopentenone1.11E-02
141GO:0048564: photosystem I assembly1.14E-02
142GO:0009850: auxin metabolic process1.14E-02
143GO:0032875: regulation of DNA endoreduplication1.14E-02
144GO:0006353: DNA-templated transcription, termination1.14E-02
145GO:0070413: trehalose metabolism in response to stress1.14E-02
146GO:0055075: potassium ion homeostasis1.14E-02
147GO:0000105: histidine biosynthetic process1.14E-02
148GO:0006464: cellular protein modification process1.26E-02
149GO:0071482: cellular response to light stimulus1.32E-02
150GO:0010497: plasmodesmata-mediated intercellular transport1.32E-02
151GO:0009657: plastid organization1.32E-02
152GO:0032544: plastid translation1.32E-02
153GO:0051607: defense response to virus1.42E-02
154GO:0051865: protein autoubiquitination1.50E-02
155GO:0006098: pentose-phosphate shunt1.50E-02
156GO:0000902: cell morphogenesis1.50E-02
157GO:0006779: porphyrin-containing compound biosynthetic process1.68E-02
158GO:2000280: regulation of root development1.68E-02
159GO:0016571: histone methylation1.68E-02
160GO:0009086: methionine biosynthetic process1.68E-02
161GO:0016573: histone acetylation1.68E-02
162GO:0015995: chlorophyll biosynthetic process1.78E-02
163GO:0009299: mRNA transcription1.88E-02
164GO:0006535: cysteine biosynthetic process from serine1.88E-02
165GO:0006782: protoporphyrinogen IX biosynthetic process1.88E-02
166GO:0030422: production of siRNA involved in RNA interference1.88E-02
167GO:0048829: root cap development1.88E-02
168GO:0006298: mismatch repair1.88E-02
169GO:0006816: calcium ion transport2.08E-02
170GO:0009089: lysine biosynthetic process via diaminopimelate2.08E-02
171GO:0009073: aromatic amino acid family biosynthetic process2.08E-02
172GO:0006415: translational termination2.08E-02
173GO:0009910: negative regulation of flower development2.28E-02
174GO:0005983: starch catabolic process2.30E-02
175GO:0045037: protein import into chloroplast stroma2.30E-02
176GO:0030048: actin filament-based movement2.52E-02
177GO:0010588: cotyledon vascular tissue pattern formation2.52E-02
178GO:0009691: cytokinin biosynthetic process2.52E-02
179GO:0009718: anthocyanin-containing compound biosynthetic process2.52E-02
180GO:0006094: gluconeogenesis2.52E-02
181GO:0048467: gynoecium development2.74E-02
182GO:0009266: response to temperature stimulus2.74E-02
183GO:0090351: seedling development2.97E-02
184GO:0010030: positive regulation of seed germination2.97E-02
185GO:0070588: calcium ion transmembrane transport2.97E-02
186GO:0000162: tryptophan biosynthetic process3.21E-02
187GO:0006833: water transport3.21E-02
188GO:0008283: cell proliferation3.23E-02
189GO:0019344: cysteine biosynthetic process3.46E-02
190GO:0030150: protein import into mitochondrial matrix3.46E-02
191GO:0006338: chromatin remodeling3.46E-02
192GO:0007010: cytoskeleton organization3.46E-02
193GO:0009636: response to toxic substance3.63E-02
194GO:0051302: regulation of cell division3.71E-02
195GO:0008299: isoprenoid biosynthetic process3.71E-02
196GO:0006306: DNA methylation3.97E-02
197GO:0016998: cell wall macromolecule catabolic process3.97E-02
198GO:0048511: rhythmic process3.97E-02
199GO:2000022: regulation of jasmonic acid mediated signaling pathway4.23E-02
200GO:0035428: hexose transmembrane transport4.23E-02
201GO:0010082: regulation of root meristem growth4.50E-02
202GO:0009693: ethylene biosynthetic process4.50E-02
203GO:0071215: cellular response to abscisic acid stimulus4.50E-02
204GO:0010584: pollen exine formation4.78E-02
205GO:0006284: base-excision repair4.78E-02
206GO:0042127: regulation of cell proliferation4.78E-02
RankGO TermAdjusted P value
1GO:0004076: biotin synthase activity0.00E+00
2GO:0019144: ADP-sugar diphosphatase activity0.00E+00
3GO:0071633: dihydroceramidase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity0.00E+00
6GO:0008756: o-succinylbenzoate-CoA ligase activity0.00E+00
7GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity0.00E+00
8GO:0017118: lipoyltransferase activity1.65E-05
9GO:0001872: (1->3)-beta-D-glucan binding1.15E-04
10GO:0003723: RNA binding2.12E-04
11GO:0009982: pseudouridine synthase activity2.63E-04
12GO:0004519: endonuclease activity3.73E-04
13GO:0005528: FK506 binding4.83E-04
14GO:0050139: nicotinate-N-glucosyltransferase activity6.19E-04
15GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity6.19E-04
16GO:0005227: calcium activated cation channel activity6.19E-04
17GO:0004425: indole-3-glycerol-phosphate synthase activity6.19E-04
18GO:0042834: peptidoglycan binding6.19E-04
19GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity6.19E-04
20GO:0080042: ADP-glucose pyrophosphohydrolase activity6.19E-04
21GO:0050308: sugar-phosphatase activity6.19E-04
22GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity6.19E-04
23GO:0019203: carbohydrate phosphatase activity6.19E-04
24GO:0003984: acetolactate synthase activity6.19E-04
25GO:0008395: steroid hydroxylase activity6.19E-04
26GO:0052381: tRNA dimethylallyltransferase activity6.19E-04
27GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity6.19E-04
28GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity6.19E-04
29GO:0004766: spermidine synthase activity1.33E-03
30GO:0008805: carbon-monoxide oxygenase activity1.33E-03
31GO:0008493: tetracycline transporter activity1.33E-03
32GO:0004826: phenylalanine-tRNA ligase activity1.33E-03
33GO:0004412: homoserine dehydrogenase activity1.33E-03
34GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.33E-03
35GO:0050736: O-malonyltransferase activity1.33E-03
36GO:0009884: cytokinin receptor activity1.33E-03
37GO:0050017: L-3-cyanoalanine synthase activity1.33E-03
38GO:0003852: 2-isopropylmalate synthase activity1.33E-03
39GO:0080041: ADP-ribose pyrophosphohydrolase activity1.33E-03
40GO:0043425: bHLH transcription factor binding1.33E-03
41GO:0016415: octanoyltransferase activity1.33E-03
42GO:0004805: trehalose-phosphatase activity1.76E-03
43GO:0004180: carboxypeptidase activity2.19E-03
44GO:0004148: dihydrolipoyl dehydrogenase activity2.19E-03
45GO:0016805: dipeptidase activity2.19E-03
46GO:0005034: osmosensor activity2.19E-03
47GO:0070402: NADPH binding2.19E-03
48GO:0015266: protein channel activity2.66E-03
49GO:0004072: aspartate kinase activity3.19E-03
50GO:0016149: translation release factor activity, codon specific3.19E-03
51GO:0017172: cysteine dioxygenase activity3.19E-03
52GO:0052656: L-isoleucine transaminase activity3.19E-03
53GO:0035197: siRNA binding3.19E-03
54GO:0043023: ribosomal large subunit binding3.19E-03
55GO:0052654: L-leucine transaminase activity3.19E-03
56GO:0080031: methyl salicylate esterase activity3.19E-03
57GO:0052655: L-valine transaminase activity3.19E-03
58GO:0031418: L-ascorbic acid binding4.18E-03
59GO:0004084: branched-chain-amino-acid transaminase activity4.30E-03
60GO:0019199: transmembrane receptor protein kinase activity4.30E-03
61GO:0004392: heme oxygenase (decyclizing) activity4.30E-03
62GO:0016279: protein-lysine N-methyltransferase activity4.30E-03
63GO:0005319: lipid transporter activity4.30E-03
64GO:0004845: uracil phosphoribosyltransferase activity4.30E-03
65GO:0003785: actin monomer binding5.52E-03
66GO:0005471: ATP:ADP antiporter activity5.52E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity5.52E-03
68GO:0080030: methyl indole-3-acetate esterase activity6.85E-03
69GO:0004332: fructose-bisphosphate aldolase activity6.85E-03
70GO:0004526: ribonuclease P activity6.85E-03
71GO:0004709: MAP kinase kinase kinase activity6.85E-03
72GO:0016208: AMP binding6.85E-03
73GO:0004130: cytochrome-c peroxidase activity6.85E-03
74GO:0016688: L-ascorbate peroxidase activity6.85E-03
75GO:2001070: starch binding6.85E-03
76GO:0030983: mismatched DNA binding6.85E-03
77GO:0004675: transmembrane receptor protein serine/threonine kinase activity6.92E-03
78GO:0043621: protein self-association7.15E-03
79GO:0003755: peptidyl-prolyl cis-trans isomerase activity7.87E-03
80GO:0004124: cysteine synthase activity8.28E-03
81GO:0004849: uridine kinase activity8.28E-03
82GO:0016832: aldehyde-lyase activity8.28E-03
83GO:0004656: procollagen-proline 4-dioxygenase activity8.28E-03
84GO:0019900: kinase binding8.28E-03
85GO:0043022: ribosome binding1.14E-02
86GO:0000156: phosphorelay response regulator activity1.18E-02
87GO:0051015: actin filament binding1.18E-02
88GO:0008173: RNA methyltransferase activity1.32E-02
89GO:0005200: structural constituent of cytoskeleton1.34E-02
90GO:0016597: amino acid binding1.42E-02
91GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.50E-02
92GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity1.50E-02
93GO:0003747: translation release factor activity1.50E-02
94GO:0016787: hydrolase activity1.69E-02
95GO:0030247: polysaccharide binding1.78E-02
96GO:0004673: protein histidine kinase activity1.88E-02
97GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity1.97E-02
98GO:0005089: Rho guanyl-nucleotide exchange factor activity2.08E-02
99GO:0004222: metalloendopeptidase activity2.18E-02
100GO:0004521: endoribonuclease activity2.30E-02
101GO:0000049: tRNA binding2.30E-02
102GO:0003746: translation elongation factor activity2.51E-02
103GO:0003697: single-stranded DNA binding2.51E-02
104GO:0000155: phosphorelay sensor kinase activity2.52E-02
105GO:0005262: calcium channel activity2.52E-02
106GO:0003774: motor activity2.74E-02
107GO:0042973: glucan endo-1,3-beta-D-glucosidase activity2.74E-02
108GO:0008266: poly(U) RNA binding2.74E-02
109GO:0008061: chitin binding2.97E-02
110GO:0008146: sulfotransferase activity2.97E-02
111GO:0051536: iron-sulfur cluster binding3.46E-02
112GO:0043424: protein histidine kinase binding3.71E-02
113GO:0051087: chaperone binding3.71E-02
114GO:0004176: ATP-dependent peptidase activity3.97E-02
115GO:0003964: RNA-directed DNA polymerase activity3.97E-02
116GO:0003727: single-stranded RNA binding4.78E-02
117GO:0003777: microtubule motor activity4.80E-02
118GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds4.95E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0005948: acetolactate synthase complex0.00E+00
4GO:0009507: chloroplast7.35E-17
5GO:0009570: chloroplast stroma2.14E-04
6GO:0009508: plastid chromosome2.63E-04
7GO:0043190: ATP-binding cassette (ABC) transporter complex6.19E-04
8GO:0015629: actin cytoskeleton7.80E-04
9GO:0009501: amyloplast8.76E-04
10GO:0000427: plastid-encoded plastid RNA polymerase complex1.33E-03
11GO:0009513: etioplast1.33E-03
12GO:0009941: chloroplast envelope1.42E-03
13GO:0009295: nucleoid2.11E-03
14GO:0009509: chromoplast2.19E-03
15GO:0030139: endocytic vesicle2.19E-03
16GO:0032585: multivesicular body membrane3.19E-03
17GO:0032432: actin filament bundle3.19E-03
18GO:0005719: nuclear euchromatin3.19E-03
19GO:0009526: plastid envelope4.30E-03
20GO:0030663: COPI-coated vesicle membrane4.30E-03
21GO:0009543: chloroplast thylakoid lumen4.71E-03
22GO:0055035: plastid thylakoid membrane5.52E-03
23GO:0005744: mitochondrial inner membrane presequence translocase complex6.61E-03
24GO:0005759: mitochondrial matrix6.67E-03
25GO:0042807: central vacuole9.81E-03
26GO:0009986: cell surface9.81E-03
27GO:0031305: integral component of mitochondrial inner membrane1.14E-02
28GO:0048226: Casparian strip1.14E-02
29GO:0046658: anchored component of plasma membrane1.18E-02
30GO:0000326: protein storage vacuole1.32E-02
31GO:0005680: anaphase-promoting complex1.50E-02
32GO:0030529: intracellular ribonucleoprotein complex1.51E-02
33GO:0015030: Cajal body1.68E-02
34GO:0016604: nuclear body1.68E-02
35GO:0030125: clathrin vesicle coat1.88E-02
36GO:0000418: DNA-directed RNA polymerase IV complex1.88E-02
37GO:0016459: myosin complex1.88E-02
38GO:0005884: actin filament2.08E-02
39GO:0000311: plastid large ribosomal subunit2.30E-02
40GO:0005938: cell cortex2.52E-02
41GO:0030095: chloroplast photosystem II2.74E-02
42GO:0031977: thylakoid lumen2.98E-02
43GO:0005856: cytoskeleton3.63E-02
44GO:0009654: photosystem II oxygen evolving complex3.71E-02
45GO:0042651: thylakoid membrane3.71E-02
46GO:0043231: intracellular membrane-bounded organelle4.22E-02
47GO:0009534: chloroplast thylakoid4.29E-02
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Gene type



Gene DE type