co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G37025

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
4	GO:0010422: regulation of brassinosteroid biosynthetic process	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0007638: mechanosensory behavior	0.00E+00
7	GO:0000372: Group I intron splicing	0.00E+00
8	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
9	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
10	GO:0045184: establishment of protein localization	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:1905177: tracheary element differentiation	0.00E+00
13	GO:0043087: regulation of GTPase activity	3.73E-04
14	GO:2000021: regulation of ion homeostasis	3.73E-04
15	GO:0035987: endodermal cell differentiation	3.73E-04
16	GO:0090548: response to nitrate starvation	3.73E-04
17	GO:1902458: positive regulation of stomatal opening	3.73E-04
18	GO:0015904: tetracycline transport	3.73E-04
19	GO:0034757: negative regulation of iron ion transport	3.73E-04
20	GO:0000305: response to oxygen radical	3.73E-04
21	GO:0006419: alanyl-tRNA aminoacylation	3.73E-04
22	GO:0042659: regulation of cell fate specification	3.73E-04
23	GO:0006438: valyl-tRNA aminoacylation	3.73E-04
24	GO:0070509: calcium ion import	3.73E-04
25	GO:0090558: plant epidermis development	3.73E-04
26	GO:0043266: regulation of potassium ion transport	3.73E-04
27	GO:1902025: nitrate import	3.73E-04
28	GO:0010063: positive regulation of trichoblast fate specification	3.73E-04
29	GO:0010080: regulation of floral meristem growth	3.73E-04
30	GO:0000105: histidine biosynthetic process	4.18E-04
31	GO:0007018: microtubule-based movement	4.92E-04
32	GO:0000373: Group II intron splicing	6.13E-04
33	GO:0007166: cell surface receptor signaling pathway	6.24E-04
34	GO:0009786: regulation of asymmetric cell division	8.10E-04
35	GO:1903426: regulation of reactive oxygen species biosynthetic process	8.10E-04
36	GO:0060359: response to ammonium ion	8.10E-04
37	GO:0048255: mRNA stabilization	8.10E-04
38	GO:1900871: chloroplast mRNA modification	8.10E-04
39	GO:0010271: regulation of chlorophyll catabolic process	8.10E-04
40	GO:1901959: positive regulation of cutin biosynthetic process	8.10E-04
41	GO:0006432: phenylalanyl-tRNA aminoacylation	8.10E-04
42	GO:0001736: establishment of planar polarity	8.10E-04
43	GO:0080009: mRNA methylation	8.10E-04
44	GO:0048829: root cap development	8.43E-04
45	GO:0010582: floral meristem determinacy	1.11E-03
46	GO:0043157: response to cation stress	1.31E-03
47	GO:0031022: nuclear migration along microfilament	1.31E-03
48	GO:0090708: specification of plant organ axis polarity	1.31E-03
49	GO:0080117: secondary growth	1.31E-03
50	GO:0016045: detection of bacterium	1.31E-03
51	GO:0010022: meristem determinacy	1.31E-03
52	GO:0010623: programmed cell death involved in cell development	1.31E-03
53	GO:1904278: positive regulation of wax biosynthetic process	1.31E-03
54	GO:0090153: regulation of sphingolipid biosynthetic process	1.31E-03
55	GO:0000160: phosphorelay signal transduction system	1.39E-03
56	GO:0010207: photosystem II assembly	1.41E-03
57	GO:0070588: calcium ion transmembrane transport	1.58E-03
58	GO:0006833: water transport	1.76E-03
59	GO:0010371: regulation of gibberellin biosynthetic process	1.89E-03
60	GO:0010071: root meristem specification	1.89E-03
61	GO:0051513: regulation of monopolar cell growth	1.89E-03
62	GO:0007231: osmosensory signaling pathway	1.89E-03
63	GO:0051639: actin filament network formation	1.89E-03
64	GO:0034059: response to anoxia	1.89E-03
65	GO:0019048: modulation by virus of host morphology or physiology	1.89E-03
66	GO:0031048: chromatin silencing by small RNA	1.89E-03
67	GO:2001141: regulation of RNA biosynthetic process	1.89E-03
68	GO:0090308: regulation of methylation-dependent chromatin silencing	1.89E-03
69	GO:0051017: actin filament bundle assembly	1.95E-03
70	GO:0051764: actin crosslink formation	2.54E-03
71	GO:0006661: phosphatidylinositol biosynthetic process	2.54E-03
72	GO:0030104: water homeostasis	2.54E-03
73	GO:0033500: carbohydrate homeostasis	2.54E-03
74	GO:0045723: positive regulation of fatty acid biosynthetic process	2.54E-03
75	GO:0051567: histone H3-K9 methylation	2.54E-03
76	GO:0010508: positive regulation of autophagy	2.54E-03
77	GO:0006021: inositol biosynthetic process	2.54E-03
78	GO:0008295: spermidine biosynthetic process	2.54E-03
79	GO:0006749: glutathione metabolic process	2.54E-03
80	GO:0016123: xanthophyll biosynthetic process	3.25E-03
81	GO:0080110: sporopollenin biosynthetic process	3.25E-03
82	GO:0016131: brassinosteroid metabolic process	3.25E-03
83	GO:0009904: chloroplast accumulation movement	3.25E-03
84	GO:0045038: protein import into chloroplast thylakoid membrane	3.25E-03
85	GO:0009736: cytokinin-activated signaling pathway	3.56E-03
86	GO:0010182: sugar mediated signaling pathway	3.88E-03
87	GO:0009958: positive gravitropism	3.88E-03
88	GO:0009959: negative gravitropism	4.02E-03
89	GO:0016554: cytidine to uridine editing	4.02E-03
90	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	4.02E-03
91	GO:1902456: regulation of stomatal opening	4.02E-03
92	GO:0048831: regulation of shoot system development	4.02E-03
93	GO:0003006: developmental process involved in reproduction	4.02E-03
94	GO:0016458: gene silencing	4.02E-03
95	GO:2000067: regulation of root morphogenesis	4.85E-03
96	GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity	4.85E-03
97	GO:2000033: regulation of seed dormancy process	4.85E-03
98	GO:0048509: regulation of meristem development	4.85E-03
99	GO:0009903: chloroplast avoidance movement	4.85E-03
100	GO:0006955: immune response	5.73E-03
101	GO:0048528: post-embryonic root development	5.73E-03
102	GO:1900056: negative regulation of leaf senescence	5.73E-03
103	GO:0048437: floral organ development	5.73E-03
104	GO:0006400: tRNA modification	5.73E-03
105	GO:0006468: protein phosphorylation	5.99E-03
106	GO:0051607: defense response to virus	6.55E-03
107	GO:0055075: potassium ion homeostasis	6.65E-03
108	GO:0048564: photosystem I assembly	6.65E-03
109	GO:0046620: regulation of organ growth	6.65E-03
110	GO:2000070: regulation of response to water deprivation	6.65E-03
111	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.79E-03
112	GO:0010027: thylakoid membrane organization	6.94E-03
113	GO:0071482: cellular response to light stimulus	7.64E-03
114	GO:0015996: chlorophyll catabolic process	7.64E-03
115	GO:0007186: G-protein coupled receptor signaling pathway	7.64E-03
116	GO:0009657: plastid organization	7.64E-03
117	GO:0032544: plastid translation	7.64E-03
118	GO:0009416: response to light stimulus	8.41E-03
119	GO:0016311: dephosphorylation	8.62E-03
120	GO:0000902: cell morphogenesis	8.66E-03
121	GO:0046916: cellular transition metal ion homeostasis	8.66E-03
122	GO:0048507: meristem development	8.66E-03
123	GO:0010311: lateral root formation	9.54E-03
124	GO:0009098: leucine biosynthetic process	9.74E-03
125	GO:2000280: regulation of root development	9.74E-03
126	GO:1900865: chloroplast RNA modification	9.74E-03
127	GO:0007346: regulation of mitotic cell cycle	9.74E-03
128	GO:0040008: regulation of growth	1.06E-02
129	GO:0010162: seed dormancy process	1.09E-02
130	GO:0009299: mRNA transcription	1.09E-02
131	GO:0030422: production of siRNA involved in RNA interference	1.09E-02
132	GO:0006865: amino acid transport	1.10E-02
133	GO:0009451: RNA modification	1.16E-02
134	GO:0048765: root hair cell differentiation	1.20E-02
135	GO:0010216: maintenance of DNA methylation	1.20E-02
136	GO:0006816: calcium ion transport	1.20E-02
137	GO:1903507: negative regulation of nucleic acid-templated transcription	1.20E-02
138	GO:0006415: translational termination	1.20E-02
139	GO:0006352: DNA-templated transcription, initiation	1.20E-02
140	GO:0006790: sulfur compound metabolic process	1.33E-02
141	GO:0045037: protein import into chloroplast stroma	1.33E-02
142	GO:0007275: multicellular organism development	1.40E-02
143	GO:0009718: anthocyanin-containing compound biosynthetic process	1.45E-02
144	GO:0009725: response to hormone	1.45E-02
145	GO:0009691: cytokinin biosynthetic process	1.45E-02
146	GO:0009926: auxin polar transport	1.49E-02
147	GO:0009887: animal organ morphogenesis	1.58E-02
148	GO:0048467: gynoecium development	1.58E-02
149	GO:0046854: phosphatidylinositol phosphorylation	1.71E-02
150	GO:0006071: glycerol metabolic process	1.85E-02
151	GO:0009734: auxin-activated signaling pathway	1.95E-02
152	GO:0009793: embryo development ending in seed dormancy	1.97E-02
153	GO:0005992: trehalose biosynthetic process	1.99E-02
154	GO:0007010: cytoskeleton organization	1.99E-02
155	GO:0051302: regulation of cell division	2.14E-02
156	GO:0006418: tRNA aminoacylation for protein translation	2.14E-02
157	GO:0010431: seed maturation	2.29E-02
158	GO:0006306: DNA methylation	2.29E-02
159	GO:0003333: amino acid transmembrane transport	2.29E-02
160	GO:0016998: cell wall macromolecule catabolic process	2.29E-02
161	GO:0030245: cellulose catabolic process	2.44E-02
162	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.44E-02
163	GO:0048316: seed development	2.46E-02
164	GO:0071215: cellular response to abscisic acid stimulus	2.60E-02
165	GO:0010082: regulation of root meristem growth	2.60E-02
166	GO:0010089: xylem development	2.76E-02
167	GO:0010584: pollen exine formation	2.76E-02
168	GO:0042127: regulation of cell proliferation	2.76E-02
169	GO:0070417: cellular response to cold	2.92E-02
170	GO:0010087: phloem or xylem histogenesis	3.08E-02
171	GO:0010118: stomatal movement	3.08E-02
172	GO:0008033: tRNA processing	3.08E-02
173	GO:0034220: ion transmembrane transport	3.08E-02
174	GO:0045454: cell redox homeostasis	3.20E-02
175	GO:0048868: pollen tube development	3.25E-02
176	GO:0006342: chromatin silencing	3.25E-02
177	GO:0010305: leaf vascular tissue pattern formation	3.25E-02
178	GO:0009733: response to auxin	3.41E-02
179	GO:0009646: response to absence of light	3.42E-02
180	GO:0048544: recognition of pollen	3.42E-02
181	GO:0008654: phospholipid biosynthetic process	3.60E-02
182	GO:0016132: brassinosteroid biosynthetic process	3.78E-02
183	GO:0009630: gravitropism	3.96E-02
184	GO:0010583: response to cyclopentenone	3.96E-02
185	GO:0016032: viral process	3.96E-02
186	GO:0009790: embryo development	4.18E-02
187	GO:0006351: transcription, DNA-templated	4.99E-02

Rank	GO Term	Adjusted P value
1	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	6.70E-05
6	GO:0010347: L-galactose-1-phosphate phosphatase activity	3.73E-04
7	GO:0042834: peptidoglycan binding	3.73E-04
8	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	3.73E-04
9	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	3.73E-04
10	GO:0004813: alanine-tRNA ligase activity	3.73E-04
11	GO:0008158: hedgehog receptor activity	3.73E-04
12	GO:0052381: tRNA dimethylallyltransferase activity	3.73E-04
13	GO:0004832: valine-tRNA ligase activity	3.73E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	3.73E-04
15	GO:0003879: ATP phosphoribosyltransferase activity	3.73E-04
16	GO:0051015: actin filament binding	6.93E-04
17	GO:0004362: glutathione-disulfide reductase activity	8.10E-04
18	GO:0003852: 2-isopropylmalate synthase activity	8.10E-04
19	GO:0043425: bHLH transcription factor binding	8.10E-04
20	GO:0004766: spermidine synthase activity	8.10E-04
21	GO:0052832: inositol monophosphate 3-phosphatase activity	8.10E-04
22	GO:0008934: inositol monophosphate 1-phosphatase activity	8.10E-04
23	GO:0008493: tetracycline transporter activity	8.10E-04
24	GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity	8.10E-04
25	GO:0052833: inositol monophosphate 4-phosphatase activity	8.10E-04
26	GO:0004826: phenylalanine-tRNA ligase activity	8.10E-04
27	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	8.10E-04
28	GO:0009884: cytokinin receptor activity	8.10E-04
29	GO:0004103: choline kinase activity	8.10E-04
30	GO:0000049: tRNA binding	1.11E-03
31	GO:0003723: RNA binding	1.21E-03
32	GO:0005262: calcium channel activity	1.25E-03
33	GO:0005034: osmosensor activity	1.31E-03
34	GO:0003913: DNA photolyase activity	1.31E-03
35	GO:0004148: dihydrolipoyl dehydrogenase activity	1.31E-03
36	GO:0005096: GTPase activator activity	1.39E-03
37	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.41E-03
38	GO:0005524: ATP binding	1.43E-03
39	GO:0001872: (1->3)-beta-D-glucan binding	1.89E-03
40	GO:0016149: translation release factor activity, codon specific	1.89E-03
41	GO:0035197: siRNA binding	1.89E-03
42	GO:0001053: plastid sigma factor activity	2.54E-03
43	GO:0010011: auxin binding	2.54E-03
44	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.54E-03
45	GO:0016987: sigma factor activity	2.54E-03
46	GO:0010328: auxin influx transmembrane transporter activity	2.54E-03
47	GO:0019199: transmembrane receptor protein kinase activity	2.54E-03
48	GO:0042277: peptide binding	2.54E-03
49	GO:0005471: ATP:ADP antiporter activity	3.25E-03
50	GO:0003777: microtubule motor activity	4.05E-03
51	GO:0050662: coenzyme binding	4.18E-03
52	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.25E-03
53	GO:0019901: protein kinase binding	4.48E-03
54	GO:0019900: kinase binding	4.85E-03
55	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	4.85E-03
56	GO:0016832: aldehyde-lyase activity	4.85E-03
57	GO:0004656: procollagen-proline 4-dioxygenase activity	4.85E-03
58	GO:0000156: phosphorelay response regulator activity	5.46E-03
59	GO:0009881: photoreceptor activity	5.73E-03
60	GO:0046914: transition metal ion binding	7.64E-03
61	GO:0003747: translation release factor activity	8.66E-03
62	GO:0008889: glycerophosphodiester phosphodiesterase activity	8.66E-03
63	GO:0004222: metalloendopeptidase activity	1.00E-02
64	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.05E-02
65	GO:0004673: protein histidine kinase activity	1.09E-02
66	GO:0004805: trehalose-phosphatase activity	1.09E-02
67	GO:0003697: single-stranded DNA binding	1.15E-02
68	GO:0008017: microtubule binding	1.19E-02
69	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.20E-02
70	GO:0003993: acid phosphatase activity	1.21E-02
71	GO:0004519: endonuclease activity	1.32E-02
72	GO:0004521: endoribonuclease activity	1.33E-02
73	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.33E-02
74	GO:0031072: heat shock protein binding	1.45E-02
75	GO:0000155: phosphorelay sensor kinase activity	1.45E-02
76	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.85E-02
77	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.85E-02
78	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.85E-02
79	GO:0031418: L-ascorbic acid binding	1.99E-02
80	GO:0043130: ubiquitin binding	1.99E-02
81	GO:0005528: FK506 binding	1.99E-02
82	GO:0003714: transcription corepressor activity	1.99E-02
83	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.01E-02
84	GO:0003690: double-stranded DNA binding	2.08E-02
85	GO:0043424: protein histidine kinase binding	2.14E-02
86	GO:0005345: purine nucleobase transmembrane transporter activity	2.14E-02
87	GO:0015171: amino acid transmembrane transporter activity	2.23E-02
88	GO:0004176: ATP-dependent peptidase activity	2.29E-02
89	GO:0050660: flavin adenine dinucleotide binding	2.35E-02
90	GO:0030570: pectate lyase activity	2.60E-02
91	GO:0008810: cellulase activity	2.60E-02
92	GO:0004650: polygalacturonase activity	2.62E-02
93	GO:0003727: single-stranded RNA binding	2.76E-02
94	GO:0003779: actin binding	2.78E-02
95	GO:0004812: aminoacyl-tRNA ligase activity	2.92E-02
96	GO:0010181: FMN binding	3.42E-02
97	GO:0004722: protein serine/threonine phosphatase activity	3.59E-02
98	GO:0016829: lyase activity	3.88E-02
99	GO:0004518: nuclease activity	3.96E-02
100	GO:0004674: protein serine/threonine kinase activity	4.20E-02
101	GO:0030246: carbohydrate binding	4.23E-02
102	GO:0005515: protein binding	4.31E-02
103	GO:0016791: phosphatase activity	4.33E-02
104	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	4.52E-02
105	GO:0008237: metallopeptidase activity	4.52E-02
106	GO:0005200: structural constituent of cytoskeleton	4.52E-02
107	GO:0016597: amino acid binding	4.71E-02
108	GO:0015250: water channel activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	3.89E-05
3	GO:0009986: cell surface	3.33E-04
4	GO:0005871: kinesin complex	3.65E-04
5	GO:0005886: plasma membrane	6.60E-04
6	GO:0005884: actin filament	9.70E-04
7	GO:0009528: plastid inner membrane	1.31E-03
8	GO:0030139: endocytic vesicle	1.31E-03
9	GO:0032585: multivesicular body membrane	1.89E-03
10	GO:0032432: actin filament bundle	1.89E-03
11	GO:0005719: nuclear euchromatin	1.89E-03
12	GO:0009532: plastid stroma	2.37E-03
13	GO:0030663: COPI-coated vesicle membrane	2.54E-03
14	GO:0009527: plastid outer membrane	2.54E-03
15	GO:0005856: cytoskeleton	2.82E-03
16	GO:0015629: actin cytoskeleton	2.83E-03
17	GO:0046658: anchored component of plasma membrane	3.66E-03
18	GO:0048226: Casparian strip	6.65E-03
19	GO:0030529: intracellular ribonucleoprotein complex	6.94E-03
20	GO:0000307: cyclin-dependent protein kinase holoenzyme complex	7.64E-03
21	GO:0005720: nuclear heterochromatin	8.66E-03
22	GO:0015030: Cajal body	9.74E-03
23	GO:0005759: mitochondrial matrix	9.95E-03
24	GO:0000418: DNA-directed RNA polymerase IV complex	1.09E-02
25	GO:0030125: clathrin vesicle coat	1.09E-02
26	GO:0005578: proteinaceous extracellular matrix	1.45E-02
27	GO:0009574: preprophase band	1.45E-02
28	GO:0030095: chloroplast photosystem II	1.58E-02
29	GO:0009570: chloroplast stroma	1.80E-02
30	GO:0031225: anchored component of membrane	1.81E-02
31	GO:0009654: photosystem II oxygen evolving complex	2.14E-02
32	GO:0005874: microtubule	2.45E-02
33	GO:0009543: chloroplast thylakoid lumen	3.59E-02
34	GO:0019898: extrinsic component of membrane	3.60E-02
35	GO:0031965: nuclear membrane	3.60E-02
36	GO:0009941: chloroplast envelope	3.81E-02
37	GO:0009535: chloroplast thylakoid membrane	4.47E-02
38	GO:0010319: stromule	4.52E-02