co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G36580

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0006903: vesicle targeting	0.00E+00
3	GO:0006216: cytidine catabolic process	0.00E+00
4	GO:0006858: extracellular transport	0.00E+00
5	GO:0036258: multivesicular body assembly	0.00E+00
6	GO:0046680: response to DDT	0.00E+00
7	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
8	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
9	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
10	GO:0006102: isocitrate metabolic process	1.89E-06
11	GO:0046686: response to cadmium ion	3.27E-05
12	GO:0006099: tricarboxylic acid cycle	3.45E-05
13	GO:0006511: ubiquitin-dependent protein catabolic process	8.72E-05
14	GO:0060321: acceptance of pollen	1.59E-04
15	GO:0010120: camalexin biosynthetic process	1.59E-04
16	GO:0019628: urate catabolic process	1.69E-04
17	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.69E-04
18	GO:0000032: cell wall mannoprotein biosynthetic process	1.69E-04
19	GO:1901430: positive regulation of syringal lignin biosynthetic process	1.69E-04
20	GO:0042964: thioredoxin reduction	1.69E-04
21	GO:0006144: purine nucleobase metabolic process	1.69E-04
22	GO:0009805: coumarin biosynthetic process	3.83E-04
23	GO:0006672: ceramide metabolic process	3.83E-04
24	GO:0010372: positive regulation of gibberellin biosynthetic process	3.83E-04
25	GO:0006996: organelle organization	3.83E-04
26	GO:0046939: nucleotide phosphorylation	3.83E-04
27	GO:0006807: nitrogen compound metabolic process	4.18E-04
28	GO:0015031: protein transport	4.30E-04
29	GO:0001927: exocyst assembly	6.25E-04
30	GO:0010272: response to silver ion	6.25E-04
31	GO:0033591: response to L-ascorbic acid	6.25E-04
32	GO:0010359: regulation of anion channel activity	6.25E-04
33	GO:0090630: activation of GTPase activity	6.25E-04
34	GO:0006517: protein deglycosylation	6.25E-04
35	GO:0006612: protein targeting to membrane	8.93E-04
36	GO:0006893: Golgi to plasma membrane transport	8.93E-04
37	GO:0051601: exocyst localization	8.93E-04
38	GO:0070676: intralumenal vesicle formation	8.93E-04
39	GO:0009298: GDP-mannose biosynthetic process	8.93E-04
40	GO:0006536: glutamate metabolic process	1.18E-03
41	GO:0009646: response to absence of light	1.35E-03
42	GO:0009823: cytokinin catabolic process	1.50E-03
43	GO:0098719: sodium ion import across plasma membrane	1.50E-03
44	GO:0018279: protein N-linked glycosylation via asparagine	1.50E-03
45	GO:0006564: L-serine biosynthetic process	1.50E-03
46	GO:0005513: detection of calcium ion	1.50E-03
47	GO:0006461: protein complex assembly	1.50E-03
48	GO:0006886: intracellular protein transport	1.54E-03
49	GO:0030163: protein catabolic process	1.75E-03
50	GO:0009058: biosynthetic process	1.84E-03
51	GO:0006555: methionine metabolic process	1.85E-03
52	GO:0009228: thiamine biosynthetic process	1.85E-03
53	GO:0009972: cytidine deamination	1.85E-03
54	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.85E-03
55	GO:0006561: proline biosynthetic process	1.85E-03
56	GO:0042744: hydrogen peroxide catabolic process	2.03E-03
57	GO:0019509: L-methionine salvage from methylthioadenosine	2.22E-03
58	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	2.22E-03
59	GO:0009612: response to mechanical stimulus	2.22E-03
60	GO:0009554: megasporogenesis	2.22E-03
61	GO:0009615: response to virus	2.22E-03
62	GO:0055114: oxidation-reduction process	2.23E-03
63	GO:0010150: leaf senescence	2.60E-03
64	GO:1900056: negative regulation of leaf senescence	2.61E-03
65	GO:0000338: protein deneddylation	2.61E-03
66	GO:0006888: ER to Golgi vesicle-mediated transport	2.61E-03
67	GO:0006402: mRNA catabolic process	3.02E-03
68	GO:0006491: N-glycan processing	3.02E-03
69	GO:0006499: N-terminal protein myristoylation	3.18E-03
70	GO:0006972: hyperosmotic response	3.46E-03
71	GO:0009699: phenylpropanoid biosynthetic process	3.46E-03
72	GO:0007186: G-protein coupled receptor signaling pathway	3.46E-03
73	GO:0019430: removal of superoxide radicals	3.46E-03
74	GO:0046685: response to arsenic-containing substance	3.91E-03
75	GO:0009821: alkaloid biosynthetic process	3.91E-03
76	GO:0006897: endocytosis	4.33E-03
77	GO:0006887: exocytosis	4.33E-03
78	GO:0043067: regulation of programmed cell death	4.38E-03
79	GO:0048354: mucilage biosynthetic process involved in seed coat development	4.38E-03
80	GO:0051453: regulation of intracellular pH	4.38E-03
81	GO:0006032: chitin catabolic process	4.87E-03
82	GO:0009688: abscisic acid biosynthetic process	4.87E-03
83	GO:0043069: negative regulation of programmed cell death	4.87E-03
84	GO:0009682: induced systemic resistance	5.38E-03
85	GO:0072593: reactive oxygen species metabolic process	5.38E-03
86	GO:0043085: positive regulation of catalytic activity	5.38E-03
87	GO:0000272: polysaccharide catabolic process	5.38E-03
88	GO:0009846: pollen germination	5.89E-03
89	GO:0009664: plant-type cell wall organization	5.89E-03
90	GO:0006790: sulfur compound metabolic process	5.91E-03
91	GO:0016925: protein sumoylation	5.91E-03
92	GO:0006890: retrograde vesicle-mediated transport, Golgi to ER	5.91E-03
93	GO:0006829: zinc II ion transport	6.46E-03
94	GO:0009718: anthocyanin-containing compound biosynthetic process	6.46E-03
95	GO:0051603: proteolysis involved in cellular protein catabolic process	6.54E-03
96	GO:0034605: cellular response to heat	7.02E-03
97	GO:0045454: cell redox homeostasis	7.45E-03
98	GO:0007031: peroxisome organization	7.60E-03
99	GO:0019853: L-ascorbic acid biosynthetic process	7.60E-03
100	GO:0046854: phosphatidylinositol phosphorylation	7.60E-03
101	GO:0005992: trehalose biosynthetic process	8.81E-03
102	GO:0018105: peptidyl-serine phosphorylation	9.27E-03
103	GO:0006874: cellular calcium ion homeostasis	9.44E-03
104	GO:0016998: cell wall macromolecule catabolic process	1.01E-02
105	GO:0015992: proton transport	1.01E-02
106	GO:0009651: response to salt stress	1.08E-02
107	GO:0030433: ubiquitin-dependent ERAD pathway	1.08E-02
108	GO:0019748: secondary metabolic process	1.08E-02
109	GO:0010227: floral organ abscission	1.14E-02
110	GO:0010089: xylem development	1.21E-02
111	GO:0009561: megagametogenesis	1.21E-02
112	GO:0009306: protein secretion	1.21E-02
113	GO:0042147: retrograde transport, endosome to Golgi	1.28E-02
114	GO:0051028: mRNA transport	1.28E-02
115	GO:0010118: stomatal movement	1.36E-02
116	GO:0042742: defense response to bacterium	1.40E-02
117	GO:0008360: regulation of cell shape	1.43E-02
118	GO:0006662: glycerol ether metabolic process	1.43E-02
119	GO:0006814: sodium ion transport	1.51E-02
120	GO:0055072: iron ion homeostasis	1.58E-02
121	GO:0009851: auxin biosynthetic process	1.58E-02
122	GO:0031047: gene silencing by RNA	1.74E-02
123	GO:1901657: glycosyl compound metabolic process	1.82E-02
124	GO:0006464: cellular protein modification process	1.90E-02
125	GO:0006914: autophagy	1.90E-02
126	GO:0071805: potassium ion transmembrane transport	1.99E-02
127	GO:0006904: vesicle docking involved in exocytosis	1.99E-02
128	GO:0009416: response to light stimulus	2.01E-02
129	GO:0016579: protein deubiquitination	2.07E-02
130	GO:0009627: systemic acquired resistance	2.33E-02
131	GO:0009826: unidimensional cell growth	2.33E-02
132	GO:0006950: response to stress	2.42E-02
133	GO:0016049: cell growth	2.51E-02
134	GO:0008219: cell death	2.61E-02
135	GO:0055085: transmembrane transport	2.72E-02
136	GO:0009407: toxin catabolic process	2.79E-02
137	GO:0007568: aging	2.89E-02
138	GO:0010119: regulation of stomatal movement	2.89E-02
139	GO:0010043: response to zinc ion	2.89E-02
140	GO:0045087: innate immune response	3.08E-02
141	GO:0016192: vesicle-mediated transport	3.16E-02
142	GO:0034599: cellular response to oxidative stress	3.18E-02
143	GO:0030001: metal ion transport	3.38E-02
144	GO:0051707: response to other organism	3.69E-02
145	GO:0009640: photomorphogenesis	3.69E-02
146	GO:0009744: response to sucrose	3.69E-02
147	GO:0009636: response to toxic substance	4.01E-02
148	GO:0006855: drug transmembrane transport	4.12E-02
149	GO:0031347: regulation of defense response	4.23E-02
150	GO:0016042: lipid catabolic process	4.29E-02
151	GO:0042538: hyperosmotic salinity response	4.34E-02
152	GO:0009751: response to salicylic acid	4.35E-02
153	GO:0006629: lipid metabolic process	4.41E-02
154	GO:0009809: lignin biosynthetic process	4.57E-02
155	GO:0006486: protein glycosylation	4.57E-02
156	GO:0009585: red, far-red light phototransduction	4.57E-02
157	GO:0006979: response to oxidative stress	4.87E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0047720: indoleacetaldoxime dehydratase activity	0.00E+00
3	GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group	0.00E+00
4	GO:0047844: deoxycytidine deaminase activity	0.00E+00
5	GO:0004846: urate oxidase activity	0.00E+00
6	GO:0001729: ceramide kinase activity	0.00E+00
7	GO:0016504: peptidase activator activity	0.00E+00
8	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.24E-08
9	GO:0004298: threonine-type endopeptidase activity	4.29E-05
10	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	5.33E-05
11	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	5.33E-05
12	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.69E-04
13	GO:0048037: cofactor binding	1.69E-04
14	GO:0004476: mannose-6-phosphate isomerase activity	1.69E-04
15	GO:0019786: Atg8-specific protease activity	1.69E-04
16	GO:0010297: heteropolysaccharide binding	3.83E-04
17	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	3.83E-04
18	GO:0004617: phosphoglycerate dehydrogenase activity	3.83E-04
19	GO:0004775: succinate-CoA ligase (ADP-forming) activity	3.83E-04
20	GO:0019779: Atg8 activating enzyme activity	3.83E-04
21	GO:0019172: glyoxalase III activity	3.83E-04
22	GO:0008517: folic acid transporter activity	3.83E-04
23	GO:0004776: succinate-CoA ligase (GDP-forming) activity	3.83E-04
24	GO:0052739: phosphatidylserine 1-acylhydrolase activity	3.83E-04
25	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.25E-04
26	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	6.25E-04
27	GO:0051287: NAD binding	7.37E-04
28	GO:0004351: glutamate decarboxylase activity	8.93E-04
29	GO:0019201: nucleotide kinase activity	8.93E-04
30	GO:0070628: proteasome binding	1.18E-03
31	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	1.18E-03
32	GO:0004031: aldehyde oxidase activity	1.18E-03
33	GO:0004930: G-protein coupled receptor activity	1.18E-03
34	GO:0050302: indole-3-acetaldehyde oxidase activity	1.18E-03
35	GO:0019776: Atg8 ligase activity	1.18E-03
36	GO:0004791: thioredoxin-disulfide reductase activity	1.35E-03
37	GO:0008374: O-acyltransferase activity	1.50E-03
38	GO:0019139: cytokinin dehydrogenase activity	1.50E-03
39	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	1.50E-03
40	GO:0031386: protein tag	1.50E-03
41	GO:0004518: nuclease activity	1.65E-03
42	GO:0031593: polyubiquitin binding	1.85E-03
43	GO:0036402: proteasome-activating ATPase activity	1.85E-03
44	GO:0030170: pyridoxal phosphate binding	1.97E-03
45	GO:0004126: cytidine deaminase activity	2.22E-03
46	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.22E-03
47	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.22E-03
48	GO:0004017: adenylate kinase activity	2.22E-03
49	GO:0008320: protein transmembrane transporter activity	2.61E-03
50	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.61E-03
51	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.33E-03
52	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	3.46E-03
53	GO:0003951: NAD+ kinase activity	3.46E-03
54	GO:0003746: translation elongation factor activity	3.65E-03
55	GO:0004743: pyruvate kinase activity	4.38E-03
56	GO:0030955: potassium ion binding	4.38E-03
57	GO:0016844: strictosidine synthase activity	4.38E-03
58	GO:0000287: magnesium ion binding	4.41E-03
59	GO:0004601: peroxidase activity	4.51E-03
60	GO:0004568: chitinase activity	4.87E-03
61	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	4.87E-03
62	GO:0008047: enzyme activator activity	4.87E-03
63	GO:0015386: potassium:proton antiporter activity	5.38E-03
64	GO:0008794: arsenate reductase (glutaredoxin) activity	5.38E-03
65	GO:0008559: xenobiotic-transporting ATPase activity	5.38E-03
66	GO:0008233: peptidase activity	5.80E-03
67	GO:0008131: primary amine oxidase activity	7.02E-03
68	GO:0017025: TBP-class protein binding	7.60E-03
69	GO:0008061: chitin binding	7.60E-03
70	GO:0005217: intracellular ligand-gated ion channel activity	7.60E-03
71	GO:0004970: ionotropic glutamate receptor activity	7.60E-03
72	GO:0043130: ubiquitin binding	8.81E-03
73	GO:0015035: protein disulfide oxidoreductase activity	9.27E-03
74	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	1.01E-02
75	GO:0005509: calcium ion binding	1.24E-02
76	GO:0047134: protein-disulfide reductase activity	1.28E-02
77	GO:0008565: protein transporter activity	1.35E-02
78	GO:0005199: structural constituent of cell wall	1.43E-02
79	GO:0046873: metal ion transmembrane transporter activity	1.43E-02
80	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.66E-02
81	GO:0046872: metal ion binding	1.79E-02
82	GO:0015385: sodium:proton antiporter activity	1.82E-02
83	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.82E-02
84	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.99E-02
85	GO:0008237: metallopeptidase activity	1.99E-02
86	GO:0016597: amino acid binding	2.07E-02
87	GO:0051213: dioxygenase activity	2.16E-02
88	GO:0008375: acetylglucosaminyltransferase activity	2.33E-02
89	GO:0009931: calcium-dependent protein serine/threonine kinase activity	2.33E-02
90	GO:0004683: calmodulin-dependent protein kinase activity	2.42E-02
91	GO:0043531: ADP binding	2.65E-02
92	GO:0005096: GTPase activator activity	2.70E-02
93	GO:0020037: heme binding	2.77E-02
94	GO:0050660: flavin adenine dinucleotide binding	2.80E-02
95	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.08E-02
96	GO:0003993: acid phosphatase activity	3.18E-02
97	GO:0008422: beta-glucosidase activity	3.28E-02
98	GO:0005516: calmodulin binding	3.36E-02
99	GO:0004364: glutathione transferase activity	3.59E-02
100	GO:0051537: 2 iron, 2 sulfur cluster binding	3.91E-02
101	GO:0035091: phosphatidylinositol binding	3.91E-02
102	GO:0004722: protein serine/threonine phosphatase activity	3.93E-02
103	GO:0005198: structural molecule activity	4.01E-02
104	GO:0016298: lipase activity	4.68E-02
105	GO:0009055: electron carrier activity	4.73E-02

Rank	GO Term	Adjusted P value
1	GO:0005829: cytosol	1.87E-07
2	GO:0000502: proteasome complex	2.15E-07
3	GO:0005839: proteasome core complex	1.02E-06
4	GO:0016442: RISC complex	1.69E-04
5	GO:0048471: perinuclear region of cytoplasm	3.19E-04
6	GO:0005773: vacuole	4.12E-04
7	GO:0030130: clathrin coat of trans-Golgi network vesicle	6.25E-04
8	GO:0030132: clathrin coat of coated pit	6.25E-04
9	GO:0009530: primary cell wall	6.25E-04
10	GO:0005775: vacuolar lumen	8.93E-04
11	GO:0005776: autophagosome	1.18E-03
12	GO:0000813: ESCRT I complex	1.50E-03
13	GO:0008250: oligosaccharyltransferase complex	1.50E-03
14	GO:0000145: exocyst	1.65E-03
15	GO:0030904: retromer complex	1.85E-03
16	GO:0030127: COPII vesicle coat	1.85E-03
17	GO:0032580: Golgi cisterna membrane	1.87E-03
18	GO:0031597: cytosolic proteasome complex	2.22E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.61E-03
20	GO:0031595: nuclear proteasome complex	2.61E-03
21	GO:0005737: cytoplasm	2.78E-03
22	GO:0000421: autophagosome membrane	3.02E-03
23	GO:0031982: vesicle	3.02E-03
24	GO:0019773: proteasome core complex, alpha-subunit complex	3.46E-03
25	GO:0005774: vacuolar membrane	3.88E-03
26	GO:0010494: cytoplasmic stress granule	3.91E-03
27	GO:0008180: COP9 signalosome	3.91E-03
28	GO:0031090: organelle membrane	3.91E-03
29	GO:0031902: late endosome membrane	4.33E-03
30	GO:0008540: proteasome regulatory particle, base subcomplex	4.38E-03
31	GO:0005618: cell wall	5.19E-03
32	GO:0005856: cytoskeleton	5.27E-03
33	GO:0008541: proteasome regulatory particle, lid subcomplex	5.38E-03
34	GO:0005783: endoplasmic reticulum	6.66E-03
35	GO:0005635: nuclear envelope	6.77E-03
36	GO:0005886: plasma membrane	6.80E-03
37	GO:0031410: cytoplasmic vesicle	1.08E-02
38	GO:0005794: Golgi apparatus	1.16E-02
39	GO:0009524: phragmoplast	1.19E-02
40	GO:0009506: plasmodesma	1.24E-02
41	GO:0009536: plastid	1.91E-02
42	GO:0000932: P-body	2.16E-02
43	GO:0009707: chloroplast outer membrane	2.61E-02
44	GO:0005643: nuclear pore	2.61E-02
45	GO:0000325: plant-type vacuole	2.89E-02
46	GO:0005768: endosome	4.24E-02