co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G36400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0045014: negative regulation of transcription by glucose	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0046486: glycerolipid metabolic process	0.00E+00
4	GO:0006907: pinocytosis	0.00E+00
5	GO:0009733: response to auxin	8.80E-07
6	GO:0009926: auxin polar transport	1.91E-05
7	GO:0009734: auxin-activated signaling pathway	3.11E-05
8	GO:0051013: microtubule severing	2.97E-04
9	GO:0045786: negative regulation of cell cycle	2.97E-04
10	GO:0006438: valyl-tRNA aminoacylation	2.97E-04
11	GO:0032958: inositol phosphate biosynthetic process	2.97E-04
12	GO:0046620: regulation of organ growth	2.98E-04
13	GO:0010583: response to cyclopentenone	4.16E-04
14	GO:0006782: protoporphyrinogen IX biosynthetic process	6.09E-04
15	GO:0048829: root cap development	6.09E-04
16	GO:0006650: glycerophospholipid metabolic process	6.50E-04
17	GO:0001736: establishment of planar polarity	6.50E-04
18	GO:0009786: regulation of asymmetric cell division	6.50E-04
19	GO:0005983: starch catabolic process	8.03E-04
20	GO:0048575: short-day photoperiodism, flowering	1.05E-03
21	GO:0090506: axillary shoot meristem initiation	1.05E-03
22	GO:1902448: positive regulation of shade avoidance	1.05E-03
23	GO:0046168: glycerol-3-phosphate catabolic process	1.05E-03
24	GO:0010226: response to lithium ion	1.05E-03
25	GO:0009825: multidimensional cell growth	1.14E-03
26	GO:0006020: inositol metabolic process	1.51E-03
27	GO:0007276: gamete generation	1.51E-03
28	GO:0006072: glycerol-3-phosphate metabolic process	1.51E-03
29	GO:0010321: regulation of vegetative phase change	1.51E-03
30	GO:0045017: glycerolipid biosynthetic process	1.51E-03
31	GO:0009686: gibberellin biosynthetic process	2.02E-03
32	GO:0042991: transcription factor import into nucleus	2.02E-03
33	GO:0009956: radial pattern formation	2.02E-03
34	GO:0048629: trichome patterning	2.02E-03
35	GO:0042127: regulation of cell proliferation	2.20E-03
36	GO:0009958: positive gravitropism	2.77E-03
37	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.19E-03
38	GO:0016554: cytidine to uridine editing	3.19E-03
39	GO:0003006: developmental process involved in reproduction	3.19E-03
40	GO:0009942: longitudinal axis specification	3.84E-03
41	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	3.84E-03
42	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.04E-03
43	GO:0006351: transcription, DNA-templated	4.20E-03
44	GO:0007050: cell cycle arrest	4.53E-03
45	GO:0000082: G1/S transition of mitotic cell cycle	4.53E-03
46	GO:0010444: guard mother cell differentiation	4.53E-03
47	GO:0010492: maintenance of shoot apical meristem identity	5.26E-03
48	GO:0015995: chlorophyll biosynthetic process	5.82E-03
49	GO:0007389: pattern specification process	6.03E-03
50	GO:0010311: lateral root formation	6.78E-03
51	GO:0048507: meristem development	6.83E-03
52	GO:0048589: developmental growth	6.83E-03
53	GO:0005982: starch metabolic process	7.67E-03
54	GO:0009638: phototropism	7.67E-03
55	GO:0006779: porphyrin-containing compound biosynthetic process	7.67E-03
56	GO:1900865: chloroplast RNA modification	7.67E-03
57	GO:0042761: very long-chain fatty acid biosynthetic process	7.67E-03
58	GO:0006949: syncytium formation	8.55E-03
59	GO:0009641: shade avoidance	8.55E-03
60	GO:0030001: metal ion transport	9.33E-03
61	GO:0009073: aromatic amino acid family biosynthetic process	9.46E-03
62	GO:0009750: response to fructose	9.46E-03
63	GO:0048765: root hair cell differentiation	9.46E-03
64	GO:0012501: programmed cell death	1.04E-02
65	GO:0010582: floral meristem determinacy	1.04E-02
66	GO:0010152: pollen maturation	1.04E-02
67	GO:0009744: response to sucrose	1.06E-02
68	GO:0010102: lateral root morphogenesis	1.14E-02
69	GO:0009785: blue light signaling pathway	1.14E-02
70	GO:0046274: lignin catabolic process	1.14E-02
71	GO:0010540: basipetal auxin transport	1.24E-02
72	GO:0048768: root hair cell tip growth	1.24E-02
73	GO:0048467: gynoecium development	1.24E-02
74	GO:0009933: meristem structural organization	1.24E-02
75	GO:0010207: photosystem II assembly	1.24E-02
76	GO:0010223: secondary shoot formation	1.24E-02
77	GO:0009887: animal organ morphogenesis	1.24E-02
78	GO:0009664: plant-type cell wall organization	1.33E-02
79	GO:0009908: flower development	1.42E-02
80	GO:0010025: wax biosynthetic process	1.45E-02
81	GO:0006636: unsaturated fatty acid biosynthetic process	1.45E-02
82	GO:0006863: purine nucleobase transport	1.45E-02
83	GO:0071555: cell wall organization	1.58E-02
84	GO:0019953: sexual reproduction	1.68E-02
85	GO:0006418: tRNA aminoacylation for protein translation	1.68E-02
86	GO:0043622: cortical microtubule organization	1.68E-02
87	GO:0003333: amino acid transmembrane transport	1.79E-02
88	GO:0051301: cell division	1.88E-02
89	GO:0009740: gibberellic acid mediated signaling pathway	1.92E-02
90	GO:0010082: regulation of root meristem growth	2.03E-02
91	GO:0001944: vasculature development	2.03E-02
92	GO:0009624: response to nematode	2.04E-02
93	GO:0045892: negative regulation of transcription, DNA-templated	2.13E-02
94	GO:0048443: stamen development	2.16E-02
95	GO:0006284: base-excision repair	2.16E-02
96	GO:0010091: trichome branching	2.16E-02
97	GO:0000226: microtubule cytoskeleton organization	2.42E-02
98	GO:0000271: polysaccharide biosynthetic process	2.42E-02
99	GO:0009741: response to brassinosteroid	2.55E-02
100	GO:0045489: pectin biosynthetic process	2.55E-02
101	GO:0010305: leaf vascular tissue pattern formation	2.55E-02
102	GO:0016042: lipid catabolic process	2.62E-02
103	GO:0007018: microtubule-based movement	2.68E-02
104	GO:0048825: cotyledon development	2.82E-02
105	GO:0009749: response to glucose	2.82E-02
106	GO:0008654: phospholipid biosynthetic process	2.82E-02
107	GO:0048364: root development	2.87E-02
108	GO:0071554: cell wall organization or biogenesis	2.96E-02
109	GO:0032502: developmental process	3.10E-02
110	GO:0030163: protein catabolic process	3.25E-02
111	GO:0010090: trichome morphogenesis	3.25E-02
112	GO:0040008: regulation of growth	3.36E-02
113	GO:0019760: glucosinolate metabolic process	3.39E-02
114	GO:0010252: auxin homeostasis	3.39E-02
115	GO:0009828: plant-type cell wall loosening	3.39E-02
116	GO:0007623: circadian rhythm	3.52E-02
117	GO:0000910: cytokinesis	3.70E-02
118	GO:0006355: regulation of transcription, DNA-templated	3.77E-02
119	GO:0016126: sterol biosynthetic process	3.85E-02
120	GO:0009911: positive regulation of flower development	3.85E-02
121	GO:0010027: thylakoid membrane organization	3.85E-02
122	GO:0009739: response to gibberellin	3.93E-02
123	GO:0006470: protein dephosphorylation	4.02E-02
124	GO:0009627: systemic acquired resistance	4.16E-02
125	GO:0010411: xyloglucan metabolic process	4.32E-02
126	GO:0048573: photoperiodism, flowering	4.32E-02
127	GO:0009817: defense response to fungus, incompatible interaction	4.65E-02
128	GO:0009832: plant-type cell wall biogenesis	4.81E-02
129	GO:0006811: ion transport	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0010011: auxin binding	5.77E-05
4	GO:0000829: inositol heptakisphosphate kinase activity	2.97E-04
5	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	2.97E-04
6	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	2.97E-04
7	GO:0005227: calcium activated cation channel activity	2.97E-04
8	GO:0000828: inositol hexakisphosphate kinase activity	2.97E-04
9	GO:0008568: microtubule-severing ATPase activity	2.97E-04
10	GO:0019203: carbohydrate phosphatase activity	2.97E-04
11	GO:0004832: valine-tRNA ligase activity	2.97E-04
12	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	2.97E-04
13	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.50E-04
14	GO:0004109: coproporphyrinogen oxidase activity	6.50E-04
15	GO:0008805: carbon-monoxide oxygenase activity	6.50E-04
16	GO:0019156: isoamylase activity	6.50E-04
17	GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity	1.05E-03
18	GO:0045544: gibberellin 20-oxidase activity	1.51E-03
19	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.02E-03
20	GO:0010328: auxin influx transmembrane transporter activity	2.02E-03
21	GO:0019199: transmembrane receptor protein kinase activity	2.02E-03
22	GO:0008725: DNA-3-methyladenine glycosylase activity	2.58E-03
23	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.19E-03
24	GO:0030332: cyclin binding	3.19E-03
25	GO:0004556: alpha-amylase activity	3.19E-03
26	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.03E-03
27	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.83E-03
28	GO:0003700: transcription factor activity, sequence-specific DNA binding	6.95E-03
29	GO:0009672: auxin:proton symporter activity	7.67E-03
30	GO:0046983: protein dimerization activity	8.84E-03
31	GO:0052716: hydroquinone:oxygen oxidoreductase activity	1.04E-02
32	GO:0010329: auxin efflux transmembrane transporter activity	1.14E-02
33	GO:0003725: double-stranded RNA binding	1.14E-02
34	GO:0008061: chitin binding	1.34E-02
35	GO:0003712: transcription cofactor activity	1.34E-02
36	GO:0004190: aspartic-type endopeptidase activity	1.34E-02
37	GO:0003777: microtubule motor activity	1.58E-02
38	GO:0005345: purine nucleobase transmembrane transporter activity	1.68E-02
39	GO:0033612: receptor serine/threonine kinase binding	1.79E-02
40	GO:0052689: carboxylic ester hydrolase activity	1.89E-02
41	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	1.91E-02
42	GO:0030570: pectate lyase activity	2.03E-02
43	GO:0043565: sequence-specific DNA binding	2.15E-02
44	GO:0042803: protein homodimerization activity	2.22E-02
45	GO:0004812: aminoacyl-tRNA ligase activity	2.29E-02
46	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	2.55E-02
47	GO:0001085: RNA polymerase II transcription factor binding	2.55E-02
48	GO:0016853: isomerase activity	2.68E-02
49	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.91E-02
50	GO:0016762: xyloglucan:xyloglucosyl transferase activity	2.96E-02
51	GO:0009055: electron carrier activity	2.97E-02
52	GO:0004672: protein kinase activity	3.02E-02
53	GO:0004518: nuclease activity	3.10E-02
54	GO:0016722: oxidoreductase activity, oxidizing metal ions	3.55E-02
55	GO:0008017: microtubule binding	3.68E-02
56	GO:0016413: O-acetyltransferase activity	3.70E-02
57	GO:0016301: kinase activity	4.08E-02
58	GO:0030247: polysaccharide binding	4.32E-02
59	GO:0004721: phosphoprotein phosphatase activity	4.32E-02
60	GO:0016798: hydrolase activity, acting on glycosyl bonds	4.32E-02
61	GO:0004674: protein serine/threonine kinase activity	4.51E-02
62	GO:0005096: GTPase activator activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009986: cell surface	2.36E-04
3	GO:0009569: chloroplast starch grain	6.50E-04
4	GO:0030139: endocytic vesicle	1.05E-03
5	GO:0009531: secondary cell wall	1.51E-03
6	GO:0032585: multivesicular body membrane	1.51E-03
7	GO:0009331: glycerol-3-phosphate dehydrogenase complex	1.51E-03
8	GO:0009508: plastid chromosome	1.14E-02
9	GO:0005875: microtubule associated complex	1.45E-02
10	GO:0005874: microtubule	1.59E-02
11	GO:0009570: chloroplast stroma	1.68E-02
12	GO:0005871: kinesin complex	2.29E-02
13	GO:0009295: nucleoid	3.55E-02
14	GO:0005667: transcription factor complex	4.16E-02
15	GO:0046658: anchored component of plasma membrane	4.64E-02
16	GO:0009707: chloroplast outer membrane	4.65E-02