co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35860

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0030155: regulation of cell adhesion	0.00E+00
6	GO:0090279: regulation of calcium ion import	0.00E+00
7	GO:0042820: vitamin B6 catabolic process	0.00E+00
8	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
9	GO:1904966: positive regulation of vitamin E biosynthetic process	0.00E+00
10	GO:1902326: positive regulation of chlorophyll biosynthetic process	0.00E+00
11	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
12	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
13	GO:0042821: pyridoxal biosynthetic process	0.00E+00
14	GO:1905177: tracheary element differentiation	0.00E+00
15	GO:0007638: mechanosensory behavior	0.00E+00
16	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
17	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
18	GO:0008298: intracellular mRNA localization	0.00E+00
19	GO:1904964: positive regulation of phytol biosynthetic process	0.00E+00
20	GO:0071474: cellular hyperosmotic response	0.00E+00
21	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
22	GO:0006399: tRNA metabolic process	0.00E+00
23	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
24	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
25	GO:0070979: protein K11-linked ubiquitination	0.00E+00
26	GO:0009658: chloroplast organization	4.94E-07
27	GO:0010027: thylakoid membrane organization	1.92E-06
28	GO:0015979: photosynthesis	2.41E-06
29	GO:0015995: chlorophyll biosynthetic process	3.19E-06
30	GO:0045038: protein import into chloroplast thylakoid membrane	5.38E-06
31	GO:0071482: cellular response to light stimulus	5.48E-05
32	GO:2001141: regulation of RNA biosynthetic process	1.01E-04
33	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.01E-04
34	GO:0009773: photosynthetic electron transport in photosystem I	1.53E-04
35	GO:0032502: developmental process	1.90E-04
36	GO:0010207: photosystem II assembly	2.68E-04
37	GO:1901259: chloroplast rRNA processing	4.94E-04
38	GO:0000476: maturation of 4.5S rRNA	5.75E-04
39	GO:0009443: pyridoxal 5'-phosphate salvage	5.75E-04
40	GO:0000967: rRNA 5'-end processing	5.75E-04
41	GO:0031426: polycistronic mRNA processing	5.75E-04
42	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	5.75E-04
43	GO:0043266: regulation of potassium ion transport	5.75E-04
44	GO:0010063: positive regulation of trichoblast fate specification	5.75E-04
45	GO:0006659: phosphatidylserine biosynthetic process	5.75E-04
46	GO:0042371: vitamin K biosynthetic process	5.75E-04
47	GO:0043686: co-translational protein modification	5.75E-04
48	GO:2000021: regulation of ion homeostasis	5.75E-04
49	GO:0051775: response to redox state	5.75E-04
50	GO:1902458: positive regulation of stomatal opening	5.75E-04
51	GO:0005991: trehalose metabolic process	5.75E-04
52	GO:0048564: photosystem I assembly	7.87E-04
53	GO:0006605: protein targeting	7.87E-04
54	GO:0032544: plastid translation	9.57E-04
55	GO:0048507: meristem development	1.14E-03
56	GO:0008654: phospholipid biosynthetic process	1.21E-03
57	GO:0051262: protein tetramerization	1.24E-03
58	GO:0034470: ncRNA processing	1.24E-03
59	GO:0010275: NAD(P)H dehydrogenase complex assembly	1.24E-03
60	GO:0060359: response to ammonium ion	1.24E-03
61	GO:0018026: peptidyl-lysine monomethylation	1.24E-03
62	GO:0048255: mRNA stabilization	1.24E-03
63	GO:1904143: positive regulation of carotenoid biosynthetic process	1.24E-03
64	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.24E-03
65	GO:0010024: phytochromobilin biosynthetic process	1.24E-03
66	GO:0019684: photosynthesis, light reaction	1.82E-03
67	GO:0043085: positive regulation of catalytic activity	1.82E-03
68	GO:0006352: DNA-templated transcription, initiation	1.82E-03
69	GO:0006954: inflammatory response	2.03E-03
70	GO:0048281: inflorescence morphogenesis	2.03E-03
71	GO:0031145: anaphase-promoting complex-dependent catabolic process	2.03E-03
72	GO:0010623: programmed cell death involved in cell development	2.03E-03
73	GO:0006788: heme oxidation	2.03E-03
74	GO:0006696: ergosterol biosynthetic process	2.03E-03
75	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	2.03E-03
76	GO:0043157: response to cation stress	2.03E-03
77	GO:0072661: protein targeting to plasma membrane	2.03E-03
78	GO:0005977: glycogen metabolic process	2.03E-03
79	GO:0016024: CDP-diacylglycerol biosynthetic process	2.09E-03
80	GO:0010020: chloroplast fission	2.69E-03
81	GO:0009102: biotin biosynthetic process	2.95E-03
82	GO:0030071: regulation of mitotic metaphase/anaphase transition	2.95E-03
83	GO:0009052: pentose-phosphate shunt, non-oxidative branch	2.95E-03
84	GO:0009226: nucleotide-sugar biosynthetic process	2.95E-03
85	GO:0006107: oxaloacetate metabolic process	2.95E-03
86	GO:0010239: chloroplast mRNA processing	2.95E-03
87	GO:0046739: transport of virus in multicellular host	2.95E-03
88	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.95E-03
89	GO:0051016: barbed-end actin filament capping	2.95E-03
90	GO:0010148: transpiration	2.95E-03
91	GO:0043572: plastid fission	2.95E-03
92	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	2.95E-03
93	GO:0016556: mRNA modification	2.95E-03
94	GO:0010071: root meristem specification	2.95E-03
95	GO:0007231: osmosensory signaling pathway	2.95E-03
96	GO:2000122: negative regulation of stomatal complex development	3.97E-03
97	GO:0033500: carbohydrate homeostasis	3.97E-03
98	GO:0031122: cytoplasmic microtubule organization	3.97E-03
99	GO:0006661: phosphatidylinositol biosynthetic process	3.97E-03
100	GO:0009765: photosynthesis, light harvesting	3.97E-03
101	GO:0006109: regulation of carbohydrate metabolic process	3.97E-03
102	GO:0006546: glycine catabolic process	3.97E-03
103	GO:0006021: inositol biosynthetic process	3.97E-03
104	GO:0006734: NADH metabolic process	3.97E-03
105	GO:0010508: positive regulation of autophagy	3.97E-03
106	GO:0010021: amylopectin biosynthetic process	3.97E-03
107	GO:0010109: regulation of photosynthesis	3.97E-03
108	GO:0007017: microtubule-based process	4.12E-03
109	GO:0000304: response to singlet oxygen	5.10E-03
110	GO:0080110: sporopollenin biosynthetic process	5.10E-03
111	GO:0032876: negative regulation of DNA endoreduplication	5.10E-03
112	GO:0010375: stomatal complex patterning	5.10E-03
113	GO:0032543: mitochondrial translation	5.10E-03
114	GO:0006564: L-serine biosynthetic process	5.10E-03
115	GO:0031365: N-terminal protein amino acid modification	5.10E-03
116	GO:0009107: lipoate biosynthetic process	5.10E-03
117	GO:0016123: xanthophyll biosynthetic process	5.10E-03
118	GO:0019722: calcium-mediated signaling	5.90E-03
119	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	6.33E-03
120	GO:0006655: phosphatidylglycerol biosynthetic process	6.33E-03
121	GO:0009959: negative gravitropism	6.33E-03
122	GO:0010190: cytochrome b6f complex assembly	6.33E-03
123	GO:0016554: cytidine to uridine editing	6.33E-03
124	GO:0050665: hydrogen peroxide biosynthetic process	6.33E-03
125	GO:0032973: amino acid export	6.33E-03
126	GO:0000741: karyogamy	6.33E-03
127	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	6.33E-03
128	GO:0010087: phloem or xylem histogenesis	6.92E-03
129	GO:0006662: glycerol ether metabolic process	7.47E-03
130	GO:0010305: leaf vascular tissue pattern formation	7.47E-03
131	GO:0010182: sugar mediated signaling pathway	7.47E-03
132	GO:0042372: phylloquinone biosynthetic process	7.65E-03
133	GO:0017148: negative regulation of translation	7.65E-03
134	GO:0048280: vesicle fusion with Golgi apparatus	7.65E-03
135	GO:0010189: vitamin E biosynthetic process	7.65E-03
136	GO:0009854: oxidative photosynthetic carbon pathway	7.65E-03
137	GO:0010019: chloroplast-nucleus signaling pathway	7.65E-03
138	GO:0080086: stamen filament development	7.65E-03
139	GO:0009646: response to absence of light	8.04E-03
140	GO:0009791: post-embryonic development	8.63E-03
141	GO:0009416: response to light stimulus	8.96E-03
142	GO:0009772: photosynthetic electron transport in photosystem II	9.06E-03
143	GO:0043090: amino acid import	9.06E-03
144	GO:0070370: cellular heat acclimation	9.06E-03
145	GO:0051693: actin filament capping	9.06E-03
146	GO:0010444: guard mother cell differentiation	9.06E-03
147	GO:0048437: floral organ development	9.06E-03
148	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	9.06E-03
149	GO:0006400: tRNA modification	9.06E-03
150	GO:0010103: stomatal complex morphogenesis	9.06E-03
151	GO:0010374: stomatal complex development	9.06E-03
152	GO:0009690: cytokinin metabolic process	1.06E-02
153	GO:0010078: maintenance of root meristem identity	1.06E-02
154	GO:0032875: regulation of DNA endoreduplication	1.06E-02
155	GO:2000070: regulation of response to water deprivation	1.06E-02
156	GO:0042255: ribosome assembly	1.06E-02
157	GO:0046620: regulation of organ growth	1.06E-02
158	GO:0006353: DNA-templated transcription, termination	1.06E-02
159	GO:0070413: trehalose metabolism in response to stress	1.06E-02
160	GO:0048367: shoot system development	1.06E-02
161	GO:0007267: cell-cell signaling	1.20E-02
162	GO:0001558: regulation of cell growth	1.21E-02
163	GO:0015996: chlorophyll catabolic process	1.21E-02
164	GO:0010052: guard cell differentiation	1.21E-02
165	GO:0007186: G-protein coupled receptor signaling pathway	1.21E-02
166	GO:0010204: defense response signaling pathway, resistance gene-independent	1.21E-02
167	GO:0010497: plasmodesmata-mediated intercellular transport	1.21E-02
168	GO:0009657: plastid organization	1.21E-02
169	GO:0043562: cellular response to nitrogen levels	1.21E-02
170	GO:0017004: cytochrome complex assembly	1.21E-02
171	GO:0080144: amino acid homeostasis	1.38E-02
172	GO:0009051: pentose-phosphate shunt, oxidative branch	1.38E-02
173	GO:0046916: cellular transition metal ion homeostasis	1.38E-02
174	GO:0000902: cell morphogenesis	1.38E-02
175	GO:0009742: brassinosteroid mediated signaling pathway	1.39E-02
176	GO:0055114: oxidation-reduction process	1.46E-02
177	GO:0009638: phototropism	1.55E-02
178	GO:0006779: porphyrin-containing compound biosynthetic process	1.55E-02
179	GO:1900865: chloroplast RNA modification	1.55E-02
180	GO:0006896: Golgi to vacuole transport	1.73E-02
181	GO:0006782: protoporphyrinogen IX biosynthetic process	1.73E-02
182	GO:0019538: protein metabolic process	1.73E-02
183	GO:0045036: protein targeting to chloroplast	1.73E-02
184	GO:0009641: shade avoidance	1.73E-02
185	GO:0018298: protein-chromophore linkage	1.76E-02
186	GO:0009089: lysine biosynthetic process via diaminopimelate	1.92E-02
187	GO:0006816: calcium ion transport	1.92E-02
188	GO:0006415: translational termination	1.92E-02
189	GO:0009684: indoleacetic acid biosynthetic process	1.92E-02
190	GO:0009790: embryo development	2.09E-02
191	GO:0005983: starch catabolic process	2.12E-02
192	GO:0045037: protein import into chloroplast stroma	2.12E-02
193	GO:0045087: innate immune response	2.24E-02
194	GO:0010628: positive regulation of gene expression	2.32E-02
195	GO:0010588: cotyledon vascular tissue pattern formation	2.32E-02
196	GO:0006108: malate metabolic process	2.32E-02
197	GO:0030036: actin cytoskeleton organization	2.32E-02
198	GO:0050826: response to freezing	2.32E-02
199	GO:0009718: anthocyanin-containing compound biosynthetic process	2.32E-02
200	GO:0009767: photosynthetic electron transport chain	2.32E-02
201	GO:0034599: cellular response to oxidative stress	2.34E-02
202	GO:0048467: gynoecium development	2.53E-02
203	GO:0010143: cutin biosynthetic process	2.53E-02
204	GO:0007015: actin filament organization	2.53E-02
205	GO:0030001: metal ion transport	2.55E-02
206	GO:0045490: pectin catabolic process	2.58E-02
207	GO:0009451: RNA modification	2.65E-02
208	GO:0019853: L-ascorbic acid biosynthetic process	2.74E-02
209	GO:0010030: positive regulation of seed germination	2.74E-02
210	GO:0070588: calcium ion transmembrane transport	2.74E-02
211	GO:0009944: polarity specification of adaxial/abaxial axis	3.19E-02
212	GO:0005992: trehalose biosynthetic process	3.19E-02
213	GO:0005975: carbohydrate metabolic process	3.20E-02
214	GO:0051302: regulation of cell division	3.42E-02
215	GO:0008299: isoprenoid biosynthetic process	3.42E-02
216	GO:0006418: tRNA aminoacylation for protein translation	3.42E-02
217	GO:0009793: embryo development ending in seed dormancy	3.44E-02
218	GO:0031408: oxylipin biosynthetic process	3.66E-02
219	GO:0019915: lipid storage	3.66E-02
220	GO:0048511: rhythmic process	3.66E-02
221	GO:0010431: seed maturation	3.66E-02
222	GO:0030245: cellulose catabolic process	3.90E-02
223	GO:0006730: one-carbon metabolic process	3.90E-02
224	GO:0051603: proteolysis involved in cellular protein catabolic process	4.02E-02
225	GO:0009686: gibberellin biosynthetic process	4.15E-02
226	GO:0001944: vasculature development	4.15E-02
227	GO:0006012: galactose metabolic process	4.15E-02
228	GO:0010584: pollen exine formation	4.41E-02
229	GO:0042127: regulation of cell proliferation	4.41E-02
230	GO:0009306: protein secretion	4.41E-02
231	GO:0009561: megagametogenesis	4.41E-02
232	GO:0010089: xylem development	4.41E-02
233	GO:0043086: negative regulation of catalytic activity	4.58E-02
234	GO:0016117: carotenoid biosynthetic process	4.67E-02
235	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.67E-02
236	GO:0042147: retrograde transport, endosome to Golgi	4.67E-02
237	GO:0042631: cellular response to water deprivation	4.93E-02
238	GO:0080022: primary root development	4.93E-02
239	GO:0008033: tRNA processing	4.93E-02
240	GO:0000413: protein peptidyl-prolyl isomerization	4.93E-02
241	GO:0010118: stomatal movement	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0004076: biotin synthase activity	0.00E+00
2	GO:0050613: delta14-sterol reductase activity	0.00E+00
3	GO:0010349: L-galactose dehydrogenase activity	0.00E+00
4	GO:0010276: phytol kinase activity	0.00E+00
5	GO:0046554: malate dehydrogenase (NADP+) activity	0.00E+00
6	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
7	GO:0004823: leucine-tRNA ligase activity	0.00E+00
8	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
9	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
10	GO:0046905: phytoene synthase activity	0.00E+00
11	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
12	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
13	GO:0005048: signal sequence binding	0.00E+00
14	GO:0019899: enzyme binding	2.66E-05
15	GO:0070402: NADPH binding	4.79E-05
16	GO:0016851: magnesium chelatase activity	1.01E-04
17	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	1.74E-04
18	GO:0016987: sigma factor activity	1.74E-04
19	GO:0043495: protein anchor	1.74E-04
20	GO:0001053: plastid sigma factor activity	1.74E-04
21	GO:0031072: heat shock protein binding	2.25E-04
22	GO:0005528: FK506 binding	4.18E-04
23	GO:0046906: tetrapyrrole binding	5.75E-04
24	GO:0051777: ent-kaurenoate oxidase activity	5.75E-04
25	GO:0004856: xylulokinase activity	5.75E-04
26	GO:0005227: calcium activated cation channel activity	5.75E-04
27	GO:0008568: microtubule-severing ATPase activity	5.75E-04
28	GO:0019203: carbohydrate phosphatase activity	5.75E-04
29	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	5.75E-04
30	GO:0005080: protein kinase C binding	5.75E-04
31	GO:0050308: sugar-phosphatase activity	5.75E-04
32	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.75E-04
33	GO:0008746: NAD(P)+ transhydrogenase activity	5.75E-04
34	GO:0042586: peptide deformylase activity	5.75E-04
35	GO:0051996: squalene synthase activity	5.75E-04
36	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	5.75E-04
37	GO:0030570: pectate lyase activity	6.77E-04
38	GO:0004033: aldo-keto reductase (NADP) activity	7.87E-04
39	GO:0003924: GTPase activity	8.37E-04
40	GO:0004047: aminomethyltransferase activity	1.24E-03
41	GO:0080097: L-tryptophan:pyruvate aminotransferase activity	1.24E-03
42	GO:0019156: isoamylase activity	1.24E-03
43	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	1.24E-03
44	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	1.24E-03
45	GO:0004512: inositol-3-phosphate synthase activity	1.24E-03
46	GO:0048531: beta-1,3-galactosyltransferase activity	1.24E-03
47	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	1.24E-03
48	GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity	1.24E-03
49	GO:0004617: phosphoglycerate dehydrogenase activity	1.24E-03
50	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	1.31E-03
51	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.03E-03
52	GO:0004180: carboxypeptidase activity	2.03E-03
53	GO:0016992: lipoate synthase activity	2.03E-03
54	GO:0003913: DNA photolyase activity	2.03E-03
55	GO:0002161: aminoacyl-tRNA editing activity	2.03E-03
56	GO:0004751: ribose-5-phosphate isomerase activity	2.03E-03
57	GO:0016805: dipeptidase activity	2.03E-03
58	GO:0003824: catalytic activity	2.36E-03
59	GO:0042802: identical protein binding	2.38E-03
60	GO:0008266: poly(U) RNA binding	2.69E-03
61	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	2.95E-03
62	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	2.95E-03
63	GO:0016149: translation release factor activity, codon specific	2.95E-03
64	GO:0048027: mRNA 5'-UTR binding	2.95E-03
65	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	2.95E-03
66	GO:0043023: ribosomal large subunit binding	2.95E-03
67	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	2.95E-03
68	GO:0017057: 6-phosphogluconolactonase activity	2.95E-03
69	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	2.95E-03
70	GO:0005525: GTP binding	3.11E-03
71	GO:0019843: rRNA binding	3.96E-03
72	GO:0045430: chalcone isomerase activity	3.97E-03
73	GO:0004045: aminoacyl-tRNA hydrolase activity	3.97E-03
74	GO:0080032: methyl jasmonate esterase activity	3.97E-03
75	GO:0042277: peptide binding	3.97E-03
76	GO:0004392: heme oxygenase (decyclizing) activity	3.97E-03
77	GO:0019199: transmembrane receptor protein kinase activity	3.97E-03
78	GO:0008891: glycolate oxidase activity	3.97E-03
79	GO:0003841: 1-acylglycerol-3-phosphate O-acyltransferase activity	3.97E-03
80	GO:0016279: protein-lysine N-methyltransferase activity	3.97E-03
81	GO:0016829: lyase activity	4.47E-03
82	GO:0016846: carbon-sulfur lyase activity	5.10E-03
83	GO:0016773: phosphotransferase activity, alcohol group as acceptor	5.10E-03
84	GO:0022891: substrate-specific transmembrane transporter activity	5.42E-03
85	GO:0080030: methyl indole-3-acetate esterase activity	6.33E-03
86	GO:0004556: alpha-amylase activity	6.33E-03
87	GO:0016208: AMP binding	6.33E-03
88	GO:0004462: lactoylglutathione lyase activity	6.33E-03
89	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	6.33E-03
90	GO:0016615: malate dehydrogenase activity	6.33E-03
91	GO:0008200: ion channel inhibitor activity	6.33E-03
92	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	6.33E-03
93	GO:2001070: starch binding	6.33E-03
94	GO:0004605: phosphatidate cytidylyltransferase activity	6.33E-03
95	GO:0047134: protein-disulfide reductase activity	6.40E-03
96	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.65E-03
97	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	7.65E-03
98	GO:0030060: L-malate dehydrogenase activity	7.65E-03
99	GO:0005261: cation channel activity	7.65E-03
100	GO:0004791: thioredoxin-disulfide reductase activity	8.04E-03
101	GO:0003690: double-stranded DNA binding	8.57E-03
102	GO:0048038: quinone binding	9.25E-03
103	GO:0008312: 7S RNA binding	1.06E-02
104	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.06E-02
105	GO:0016791: phosphatase activity	1.12E-02
106	GO:0003723: RNA binding	1.14E-02
107	GO:0008483: transaminase activity	1.20E-02
108	GO:0005200: structural constituent of cytoskeleton	1.20E-02
109	GO:0046914: transition metal ion binding	1.21E-02
110	GO:0016597: amino acid binding	1.27E-02
111	GO:0051082: unfolded protein binding	1.29E-02
112	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.38E-02
113	GO:0003747: translation release factor activity	1.38E-02
114	GO:0016168: chlorophyll binding	1.42E-02
115	GO:0004743: pyruvate kinase activity	1.55E-02
116	GO:0030955: potassium ion binding	1.55E-02
117	GO:0008047: enzyme activator activity	1.73E-02
118	GO:0015020: glucuronosyltransferase activity	1.73E-02
119	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.76E-02
120	GO:0004222: metalloendopeptidase activity	1.94E-02
121	GO:0008378: galactosyltransferase activity	2.12E-02
122	GO:0009982: pseudouridine synthase activity	2.32E-02
123	GO:0005262: calcium channel activity	2.32E-02
124	GO:0003993: acid phosphatase activity	2.34E-02
125	GO:0016491: oxidoreductase activity	2.40E-02
126	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.53E-02
127	GO:0004185: serine-type carboxypeptidase activity	2.88E-02
128	GO:0005509: calcium ion binding	2.95E-02
129	GO:0035091: phosphatidylinositol binding	3.12E-02
130	GO:0004857: enzyme inhibitor activity	3.19E-02
131	GO:0043424: protein histidine kinase binding	3.42E-02
132	GO:0004519: endonuclease activity	3.51E-02
133	GO:0004176: ATP-dependent peptidase activity	3.66E-02
134	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.88E-02
135	GO:0008810: cellulase activity	4.15E-02
136	GO:0003727: single-stranded RNA binding	4.41E-02
137	GO:0004812: aminoacyl-tRNA ligase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	4.66E-44
3	GO:0009570: chloroplast stroma	4.47E-24
4	GO:0009535: chloroplast thylakoid membrane	3.27E-18
5	GO:0009579: thylakoid	1.82E-10
6	GO:0009543: chloroplast thylakoid lumen	7.64E-10
7	GO:0009941: chloroplast envelope	1.27E-08
8	GO:0009534: chloroplast thylakoid	8.87E-07
9	GO:0031977: thylakoid lumen	9.97E-07
10	GO:0009654: photosystem II oxygen evolving complex	1.47E-06
11	GO:0080085: signal recognition particle, chloroplast targeting	1.44E-05
12	GO:0042651: thylakoid membrane	3.67E-05
13	GO:0010007: magnesium chelatase complex	4.79E-05
14	GO:0031969: chloroplast membrane	7.13E-05
15	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	7.37E-05
16	GO:0019898: extrinsic component of membrane	1.50E-04
17	GO:0010319: stromule	2.61E-04
18	GO:0009344: nitrite reductase complex [NAD(P)H]	5.75E-04
19	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.57E-04
20	GO:0042644: chloroplast nucleoid	1.14E-03
21	GO:0008290: F-actin capping protein complex	1.24E-03
22	GO:0009528: plastid inner membrane	2.03E-03
23	GO:0030529: intracellular ribonucleoprotein complex	2.12E-03
24	GO:0009508: plastid chromosome	2.38E-03
25	GO:0030095: chloroplast photosystem II	2.69E-03
26	GO:0042646: plastid nucleoid	2.95E-03
27	GO:0015630: microtubule cytoskeleton	2.95E-03
28	GO:0030663: COPI-coated vesicle membrane	3.97E-03
29	GO:0009527: plastid outer membrane	3.97E-03
30	GO:0009532: plastid stroma	4.53E-03
31	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	6.33E-03
32	GO:0009523: photosystem II	8.63E-03
33	GO:0009533: chloroplast stromal thylakoid	9.06E-03
34	GO:0012507: ER to Golgi transport vesicle membrane	1.06E-02
35	GO:0009501: amyloplast	1.06E-02
36	GO:0009295: nucleoid	1.20E-02
37	GO:0009539: photosystem II reaction center	1.21E-02
38	GO:0045298: tubulin complex	1.38E-02
39	GO:0005680: anaphase-promoting complex	1.38E-02
40	GO:0016604: nuclear body	1.55E-02
41	GO:0010287: plastoglobule	1.60E-02
42	GO:0030125: clathrin vesicle coat	1.73E-02
43	GO:0009707: chloroplast outer membrane	1.76E-02
44	GO:0005623: cell	1.77E-02
45	GO:0000311: plastid large ribosomal subunit	2.12E-02
46	GO:0030176: integral component of endoplasmic reticulum membrane	2.74E-02
47	GO:0043234: protein complex	2.96E-02
48	GO:0009536: plastid	4.95E-02