co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35660

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
3	GO:0070272: proton-transporting ATP synthase complex biogenesis	0.00E+00
4	GO:0000476: maturation of 4.5S rRNA	3.00E-05
5	GO:0000967: rRNA 5'-end processing	3.00E-05
6	GO:0043007: maintenance of rDNA	3.00E-05
7	GO:0010028: xanthophyll cycle	3.00E-05
8	GO:0034337: RNA folding	3.00E-05
9	GO:0016122: xanthophyll metabolic process	7.58E-05
10	GO:0034470: ncRNA processing	7.58E-05
11	GO:0006696: ergosterol biosynthetic process	1.32E-04
12	GO:0016050: vesicle organization	1.32E-04
13	GO:0045338: farnesyl diphosphate metabolic process	1.97E-04
14	GO:0010601: positive regulation of auxin biosynthetic process	1.97E-04
15	GO:0006109: regulation of carbohydrate metabolic process	2.67E-04
16	GO:0015994: chlorophyll metabolic process	2.67E-04
17	GO:0006656: phosphatidylcholine biosynthetic process	3.42E-04
18	GO:0009643: photosynthetic acclimation	4.20E-04
19	GO:2000033: regulation of seed dormancy process	5.02E-04
20	GO:1901259: chloroplast rRNA processing	5.02E-04
21	GO:0048437: floral organ development	5.88E-04
22	GO:0015031: protein transport	6.10E-04
23	GO:0009642: response to light intensity	6.76E-04
24	GO:0043085: positive regulation of catalytic activity	1.16E-03
25	GO:0035556: intracellular signal transduction	1.17E-03
26	GO:0018107: peptidyl-threonine phosphorylation	1.38E-03
27	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	2.38E-03
28	GO:0006662: glycerol ether metabolic process	2.94E-03
29	GO:0009556: microsporogenesis	3.24E-03
30	GO:0015979: photosynthesis	3.47E-03
31	GO:0009828: plant-type cell wall loosening	3.87E-03
32	GO:0016042: lipid catabolic process	4.35E-03
33	GO:0010027: thylakoid membrane organization	4.36E-03
34	GO:0016126: sterol biosynthetic process	4.36E-03
35	GO:0006906: vesicle fusion	4.70E-03
36	GO:0015995: chlorophyll biosynthetic process	4.88E-03
37	GO:0034599: cellular response to oxidative stress	6.35E-03
38	GO:0006887: exocytosis	6.94E-03
39	GO:0006631: fatty acid metabolic process	6.94E-03
40	GO:0009664: plant-type cell wall organization	8.60E-03
41	GO:0006813: potassium ion transport	9.03E-03
42	GO:0006857: oligopeptide transport	9.47E-03
43	GO:0043086: negative regulation of catalytic activity	1.02E-02
44	GO:0009553: embryo sac development	1.13E-02
45	GO:0018105: peptidyl-serine phosphorylation	1.18E-02
46	GO:0006396: RNA processing	1.18E-02
47	GO:0006633: fatty acid biosynthetic process	1.59E-02
48	GO:0009826: unidimensional cell growth	2.26E-02
49	GO:0009658: chloroplast organization	2.32E-02
50	GO:0044550: secondary metabolite biosynthetic process	2.88E-02
51	GO:0045454: cell redox homeostasis	3.08E-02
52	GO:0032259: methylation	3.47E-02
53	GO:0006629: lipid metabolic process	3.58E-02
54	GO:0009408: response to heat	3.58E-02
55	GO:0006281: DNA repair	3.58E-02

Rank	GO Term	Adjusted P value
1	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
2	GO:0097100: supercoiled DNA binding	0.00E+00
3	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
4	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	7.58E-05
5	GO:0000234: phosphoethanolamine N-methyltransferase activity	7.58E-05
6	GO:0008967: phosphoglycolate phosphatase activity	7.58E-05
7	GO:0022890: inorganic cation transmembrane transporter activity	1.97E-04
8	GO:0016851: magnesium chelatase activity	1.97E-04
9	GO:0004629: phospholipase C activity	4.20E-04
10	GO:0004435: phosphatidylinositol phospholipase C activity	5.02E-04
11	GO:0004525: ribonuclease III activity	6.76E-04
12	GO:0008047: enzyme activator activity	1.06E-03
13	GO:0047372: acylglycerol lipase activity	1.16E-03
14	GO:0015386: potassium:proton antiporter activity	1.16E-03
15	GO:0004857: enzyme inhibitor activity	1.86E-03
16	GO:0015079: potassium ion transmembrane transporter activity	1.98E-03
17	GO:0047134: protein-disulfide reductase activity	2.66E-03
18	GO:0004791: thioredoxin-disulfide reductase activity	3.09E-03
19	GO:0015299: solute:proton antiporter activity	3.09E-03
20	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.71E-03
21	GO:0003746: translation elongation factor activity	6.16E-03
22	GO:0003993: acid phosphatase activity	6.35E-03
23	GO:0000149: SNARE binding	6.54E-03
24	GO:0005484: SNAP receptor activity	7.34E-03
25	GO:0016298: lipase activity	9.25E-03
26	GO:0015035: protein disulfide oxidoreductase activity	1.18E-02
27	GO:0005525: GTP binding	1.30E-02
28	GO:0019843: rRNA binding	1.36E-02
29	GO:0004252: serine-type endopeptidase activity	1.46E-02
30	GO:0005215: transporter activity	1.78E-02
31	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	2.02E-02
32	GO:0020037: heme binding	2.54E-02
33	GO:0004871: signal transducer activity	3.18E-02
34	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	3.25E-02
35	GO:0016887: ATPase activity	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.82E-10
2	GO:0009534: chloroplast thylakoid	1.46E-05
3	GO:0009535: chloroplast thylakoid membrane	3.16E-05
4	GO:0009570: chloroplast stroma	6.92E-05
5	GO:0010007: magnesium chelatase complex	1.32E-04
6	GO:0009941: chloroplast envelope	1.92E-04
7	GO:0009840: chloroplastic endopeptidase Clp complex	5.02E-04
8	GO:0031901: early endosome membrane	8.63E-04
9	GO:0009706: chloroplast inner membrane	9.54E-04
10	GO:0032040: small-subunit processome	1.27E-03
11	GO:0009508: plastid chromosome	1.38E-03
12	GO:0030095: chloroplast photosystem II	1.50E-03
13	GO:0009532: plastid stroma	2.11E-03
14	GO:0031969: chloroplast membrane	3.04E-03
15	GO:0009295: nucleoid	4.03E-03
16	GO:0031977: thylakoid lumen	6.94E-03
17	GO:0031201: SNARE complex	6.94E-03
18	GO:0016020: membrane	8.57E-03
19	GO:0009543: chloroplast thylakoid lumen	1.36E-02
20	GO:0005623: cell	1.38E-02