co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G35370

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0002184: cytoplasmic translational termination	0.00E+00
2	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
3	GO:0035970: peptidyl-threonine dephosphorylation	0.00E+00
4	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
5	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
6	GO:0032544: plastid translation	2.18E-10
7	GO:0015979: photosynthesis	2.70E-08
8	GO:0009773: photosynthetic electron transport in photosystem I	1.95E-07
9	GO:0006412: translation	5.75E-07
10	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.60E-05
11	GO:0006546: glycine catabolic process	2.94E-05
12	GO:0010190: cytochrome b6f complex assembly	6.98E-05
13	GO:0042254: ribosome biogenesis	2.08E-04
14	GO:0010027: thylakoid membrane organization	2.94E-04
15	GO:0009735: response to cytokinin	3.26E-04
16	GO:0015995: chlorophyll biosynthetic process	3.65E-04
17	GO:0009817: defense response to fungus, incompatible interaction	4.18E-04
18	GO:0009813: flavonoid biosynthetic process	4.45E-04
19	GO:0018026: peptidyl-lysine monomethylation	4.48E-04
20	GO:0010275: NAD(P)H dehydrogenase complex assembly	4.48E-04
21	GO:0010207: photosystem II assembly	5.92E-04
22	GO:2001295: malonyl-CoA biosynthetic process	7.29E-04
23	GO:0061077: chaperone-mediated protein folding	9.79E-04
24	GO:0006986: response to unfolded protein	1.04E-03
25	GO:0080158: chloroplast ribulose bisphosphate carboxylase complex biogenesis	1.04E-03
26	GO:0006020: inositol metabolic process	1.04E-03
27	GO:0071484: cellular response to light intensity	1.04E-03
28	GO:0051085: chaperone mediated protein folding requiring cofactor	1.04E-03
29	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.04E-03
30	GO:0010731: protein glutathionylation	1.04E-03
31	GO:0006021: inositol biosynthetic process	1.38E-03
32	GO:0006542: glutamine biosynthetic process	1.38E-03
33	GO:0019676: ammonia assimilation cycle	1.38E-03
34	GO:0019464: glycine decarboxylation via glycine cleavage system	1.38E-03
35	GO:0022622: root system development	1.38E-03
36	GO:0006564: L-serine biosynthetic process	1.76E-03
37	GO:0016120: carotene biosynthetic process	1.76E-03
38	GO:0000304: response to singlet oxygen	1.76E-03
39	GO:0006751: glutathione catabolic process	2.17E-03
40	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.17E-03
41	GO:0000741: karyogamy	2.17E-03
42	GO:0046855: inositol phosphate dephosphorylation	2.17E-03
43	GO:0009955: adaxial/abaxial pattern specification	2.60E-03
44	GO:1901259: chloroplast rRNA processing	2.60E-03
45	GO:0032880: regulation of protein localization	3.06E-03
46	GO:0009772: photosynthetic electron transport in photosystem II	3.06E-03
47	GO:0006633: fatty acid biosynthetic process	3.11E-03
48	GO:0006810: transport	3.43E-03
49	GO:0048564: photosystem I assembly	3.55E-03
50	GO:0009739: response to gibberellin	4.04E-03
51	GO:0071482: cellular response to light stimulus	4.06E-03
52	GO:0046916: cellular transition metal ion homeostasis	4.60E-03
53	GO:0006783: heme biosynthetic process	4.60E-03
54	GO:0010206: photosystem II repair	4.60E-03
55	GO:0006631: fatty acid metabolic process	5.48E-03
56	GO:0045036: protein targeting to chloroplast	5.74E-03
57	GO:0006949: syncytium formation	5.74E-03
58	GO:0006782: protoporphyrinogen IX biosynthetic process	5.74E-03
59	GO:0009658: chloroplast organization	6.10E-03
60	GO:0018119: peptidyl-cysteine S-nitrosylation	6.34E-03
61	GO:0006415: translational termination	6.34E-03
62	GO:0006790: sulfur compound metabolic process	6.96E-03
63	GO:0005983: starch catabolic process	6.96E-03
64	GO:0016024: CDP-diacylglycerol biosynthetic process	6.96E-03
65	GO:2000012: regulation of auxin polar transport	7.61E-03
66	GO:0010143: cutin biosynthetic process	8.28E-03
67	GO:0019253: reductive pentose-phosphate cycle	8.28E-03
68	GO:0046854: phosphatidylinositol phosphorylation	8.97E-03
69	GO:0006457: protein folding	1.02E-02
70	GO:0009740: gibberellic acid mediated signaling pathway	1.08E-02
71	GO:0009768: photosynthesis, light harvesting in photosystem I	1.12E-02
72	GO:0006418: tRNA aminoacylation for protein translation	1.12E-02
73	GO:0031408: oxylipin biosynthetic process	1.19E-02
74	GO:0046686: response to cadmium ion	1.25E-02
75	GO:0016226: iron-sulfur cluster assembly	1.27E-02
76	GO:0009561: megagametogenesis	1.43E-02
77	GO:0016117: carotenoid biosynthetic process	1.52E-02
78	GO:0008284: positive regulation of cell proliferation	1.52E-02
79	GO:0000413: protein peptidyl-prolyl isomerization	1.60E-02
80	GO:0010197: polar nucleus fusion	1.69E-02
81	GO:0009958: positive gravitropism	1.69E-02
82	GO:0048544: recognition of pollen	1.78E-02
83	GO:0015986: ATP synthesis coupled proton transport	1.78E-02
84	GO:0019252: starch biosynthetic process	1.87E-02
85	GO:0009828: plant-type cell wall loosening	2.25E-02
86	GO:0048481: plant ovule development	3.09E-02
87	GO:0009409: response to cold	3.13E-02
88	GO:0007568: aging	3.42E-02
89	GO:0048527: lateral root development	3.42E-02
90	GO:0010119: regulation of stomatal movement	3.42E-02
91	GO:0080167: response to karrikin	3.80E-02
92	GO:0030001: metal ion transport	4.01E-02
93	GO:0010114: response to red light	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
2	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
3	GO:0010303: limit dextrinase activity	0.00E+00
4	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
5	GO:0051060: pullulanase activity	0.00E+00
6	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
7	GO:0019843: rRNA binding	5.48E-12
8	GO:0003735: structural constituent of ribosome	1.13E-08
9	GO:0045430: chalcone isomerase activity	1.47E-07
10	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.85E-07
11	GO:0005528: FK506 binding	1.10E-06
12	GO:0005504: fatty acid binding	6.94E-06
13	GO:0031072: heat shock protein binding	2.16E-05
14	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.94E-05
15	GO:0003989: acetyl-CoA carboxylase activity	4.73E-05
16	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.00E-04
17	GO:0004853: uroporphyrinogen decarboxylase activity	2.00E-04
18	GO:0004856: xylulokinase activity	2.00E-04
19	GO:0009374: biotin binding	2.00E-04
20	GO:0051082: unfolded protein binding	2.53E-04
21	GO:0004618: phosphoglycerate kinase activity	4.48E-04
22	GO:0003839: gamma-glutamylcyclotransferase activity	4.48E-04
23	GO:0004617: phosphoglycerate dehydrogenase activity	4.48E-04
24	GO:0004047: aminomethyltransferase activity	4.48E-04
25	GO:0052832: inositol monophosphate 3-phosphatase activity	4.48E-04
26	GO:0008934: inositol monophosphate 1-phosphatase activity	4.48E-04
27	GO:0052833: inositol monophosphate 4-phosphatase activity	4.48E-04
28	GO:0016630: protochlorophyllide reductase activity	4.48E-04
29	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	4.48E-04
30	GO:0004075: biotin carboxylase activity	7.29E-04
31	GO:0004751: ribose-5-phosphate isomerase activity	7.29E-04
32	GO:0045174: glutathione dehydrogenase (ascorbate) activity	7.29E-04
33	GO:0002161: aminoacyl-tRNA editing activity	7.29E-04
34	GO:0004148: dihydrolipoyl dehydrogenase activity	7.29E-04
35	GO:0016149: translation release factor activity, codon specific	1.04E-03
36	GO:0043023: ribosomal large subunit binding	1.04E-03
37	GO:0008097: 5S rRNA binding	1.04E-03
38	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.04E-03
39	GO:0016279: protein-lysine N-methyltransferase activity	1.38E-03
40	GO:0004356: glutamate-ammonia ligase activity	1.76E-03
41	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.76E-03
42	GO:0003959: NADPH dehydrogenase activity	1.76E-03
43	GO:0048038: quinone binding	1.95E-03
44	GO:0004556: alpha-amylase activity	2.17E-03
45	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	2.17E-03
46	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	2.17E-03
47	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	2.60E-03
48	GO:0004033: aldo-keto reductase (NADP) activity	3.55E-03
49	GO:0046914: transition metal ion binding	4.06E-03
50	GO:0003747: translation release factor activity	4.60E-03
51	GO:0008378: galactosyltransferase activity	6.96E-03
52	GO:0000049: tRNA binding	6.96E-03
53	GO:0004022: alcohol dehydrogenase (NAD) activity	7.61E-03
54	GO:0008266: poly(U) RNA binding	8.28E-03
55	GO:0008083: growth factor activity	8.28E-03
56	GO:0031409: pigment binding	9.68E-03
57	GO:0051536: iron-sulfur cluster binding	1.04E-02
58	GO:0051087: chaperone binding	1.12E-02
59	GO:0043424: protein histidine kinase binding	1.12E-02
60	GO:0009055: electron carrier activity	1.44E-02
61	GO:0004812: aminoacyl-tRNA ligase activity	1.52E-02
62	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	1.69E-02
63	GO:0005509: calcium ion binding	1.78E-02
64	GO:0016791: phosphatase activity	2.25E-02
65	GO:0008483: transaminase activity	2.35E-02
66	GO:0016722: oxidoreductase activity, oxidizing metal ions	2.35E-02
67	GO:0008237: metallopeptidase activity	2.35E-02
68	GO:0016597: amino acid binding	2.45E-02
69	GO:0016168: chlorophyll binding	2.66E-02
70	GO:0004721: phosphoprotein phosphatase activity	2.87E-02
71	GO:0008168: methyltransferase activity	2.95E-02
72	GO:0016491: oxidoreductase activity	3.01E-02
73	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.09E-02
74	GO:0004222: metalloendopeptidase activity	3.31E-02
75	GO:0004364: glutathione transferase activity	4.25E-02
76	GO:0004185: serine-type carboxypeptidase activity	4.37E-02
77	GO:0051537: 2 iron, 2 sulfur cluster binding	4.62E-02
78	GO:0035091: phosphatidylinositol binding	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009575: chromoplast stroma	0.00E+00
3	GO:0009507: chloroplast	5.84E-57
4	GO:0009570: chloroplast stroma	2.51E-43
5	GO:0009535: chloroplast thylakoid membrane	1.62E-32
6	GO:0009579: thylakoid	1.97E-27
7	GO:0009941: chloroplast envelope	2.06E-27
8	GO:0009534: chloroplast thylakoid	7.00E-23
9	GO:0009543: chloroplast thylakoid lumen	3.68E-15
10	GO:0031977: thylakoid lumen	3.44E-14
11	GO:0005840: ribosome	2.37E-09
12	GO:0009654: photosystem II oxygen evolving complex	2.17E-08
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	5.96E-08
14	GO:0019898: extrinsic component of membrane	7.23E-06
15	GO:0009547: plastid ribosome	2.00E-04
16	GO:0031969: chloroplast membrane	3.04E-04
17	GO:0010287: plastoglobule	3.33E-04
18	GO:0030095: chloroplast photosystem II	5.92E-04
19	GO:0009317: acetyl-CoA carboxylase complex	7.29E-04
20	GO:0005960: glycine cleavage complex	1.04E-03
21	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	2.17E-03
22	GO:0009536: plastid	2.40E-03
23	GO:0010319: stromule	2.50E-03
24	GO:0009840: chloroplastic endopeptidase Clp complex	2.60E-03
25	GO:0009533: chloroplast stromal thylakoid	3.06E-03
26	GO:0009707: chloroplast outer membrane	3.65E-03
27	GO:0009539: photosystem II reaction center	4.06E-03
28	GO:0005763: mitochondrial small ribosomal subunit	4.60E-03
29	GO:0022626: cytosolic ribosome	6.47E-03
30	GO:0000311: plastid large ribosomal subunit	6.96E-03
31	GO:0048046: apoplast	7.24E-03
32	GO:0009508: plastid chromosome	7.61E-03
33	GO:0000312: plastid small ribosomal subunit	8.28E-03
34	GO:0016020: membrane	8.30E-03
35	GO:0030076: light-harvesting complex	8.97E-03
36	GO:0043234: protein complex	9.68E-03
37	GO:0042651: thylakoid membrane	1.12E-02
38	GO:0015935: small ribosomal subunit	1.19E-02
39	GO:0009532: plastid stroma	1.19E-02
40	GO:0005615: extracellular space	2.22E-02
41	GO:0009295: nucleoid	2.35E-02
42	GO:0046658: anchored component of plasma membrane	2.62E-02
43	GO:0009505: plant-type cell wall	2.80E-02
44	GO:0015934: large ribosomal subunit	3.42E-02