co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G34925

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:0045014: negative regulation of transcription by glucose	0.00E+00
3	GO:0009733: response to auxin	9.05E-09
4	GO:0061062: regulation of nematode larval development	5.84E-06
5	GO:0046620: regulation of organ growth	1.24E-05
6	GO:0009686: gibberellin biosynthetic process	2.73E-04
7	GO:0032958: inositol phosphate biosynthetic process	3.60E-04
8	GO:0045786: negative regulation of cell cycle	3.60E-04
9	GO:0010726: positive regulation of hydrogen peroxide metabolic process	3.60E-04
10	GO:0009734: auxin-activated signaling pathway	3.65E-04
11	GO:0080005: photosystem stoichiometry adjustment	7.83E-04
12	GO:0009786: regulation of asymmetric cell division	7.83E-04
13	GO:0031648: protein destabilization	7.83E-04
14	GO:0005983: starch catabolic process	1.05E-03
15	GO:0071398: cellular response to fatty acid	1.27E-03
16	GO:0006065: UDP-glucuronate biosynthetic process	1.27E-03
17	GO:0048575: short-day photoperiodism, flowering	1.27E-03
18	GO:0009887: animal organ morphogenesis	1.34E-03
19	GO:0006351: transcription, DNA-templated	1.43E-03
20	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.50E-03
21	GO:0006863: purine nucleobase transport	1.67E-03
22	GO:0010321: regulation of vegetative phase change	1.83E-03
23	GO:0006020: inositol metabolic process	1.83E-03
24	GO:0007276: gamete generation	1.83E-03
25	GO:0009926: auxin polar transport	2.27E-03
26	GO:0042991: transcription factor import into nucleus	2.45E-03
27	GO:0006470: protein dephosphorylation	2.70E-03
28	GO:0071555: cell wall organization	2.91E-03
29	GO:0048497: maintenance of floral organ identity	3.14E-03
30	GO:0009107: lipoate biosynthetic process	3.14E-03
31	GO:0045487: gibberellin catabolic process	3.14E-03
32	GO:0009913: epidermal cell differentiation	3.88E-03
33	GO:1902456: regulation of stomatal opening	3.88E-03
34	GO:0003006: developmental process involved in reproduction	3.88E-03
35	GO:0010942: positive regulation of cell death	3.88E-03
36	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	3.88E-03
37	GO:0010358: leaf shaping	3.88E-03
38	GO:0016554: cytidine to uridine editing	3.88E-03
39	GO:0048825: cotyledon development	4.25E-03
40	GO:0071554: cell wall organization or biogenesis	4.55E-03
41	GO:0006694: steroid biosynthetic process	4.67E-03
42	GO:0009861: jasmonic acid and ethylene-dependent systemic resistance	4.67E-03
43	GO:0016567: protein ubiquitination	5.13E-03
44	GO:0048366: leaf development	5.50E-03
45	GO:0007050: cell cycle arrest	5.52E-03
46	GO:0019760: glucosinolate metabolic process	5.52E-03
47	GO:0006402: mRNA catabolic process	6.41E-03
48	GO:0009704: de-etiolation	6.41E-03
49	GO:0010492: maintenance of shoot apical meristem identity	6.41E-03
50	GO:0007186: G-protein coupled receptor signaling pathway	7.36E-03
51	GO:0048573: photoperiodism, flowering	7.76E-03
52	GO:0051865: protein autoubiquitination	8.35E-03
53	GO:0048589: developmental growth	8.35E-03
54	GO:0009056: catabolic process	8.35E-03
55	GO:0048507: meristem development	8.35E-03
56	GO:0005982: starch metabolic process	9.38E-03
57	GO:0009638: phototropism	9.38E-03
58	GO:0006779: porphyrin-containing compound biosynthetic process	9.38E-03
59	GO:1900865: chloroplast RNA modification	9.38E-03
60	GO:0040008: regulation of growth	9.88E-03
61	GO:0006355: regulation of transcription, DNA-templated	1.01E-02
62	GO:0048829: root cap development	1.05E-02
63	GO:0009641: shade avoidance	1.05E-02
64	GO:0006949: syncytium formation	1.05E-02
65	GO:0006782: protoporphyrinogen IX biosynthetic process	1.05E-02
66	GO:0006468: protein phosphorylation	1.12E-02
67	GO:0048364: root development	1.15E-02
68	GO:0009750: response to fructose	1.16E-02
69	GO:0008285: negative regulation of cell proliferation	1.16E-02
70	GO:0009739: response to gibberellin	1.21E-02
71	GO:0010152: pollen maturation	1.28E-02
72	GO:0012501: programmed cell death	1.28E-02
73	GO:0010582: floral meristem determinacy	1.28E-02
74	GO:0006631: fatty acid metabolic process	1.30E-02
75	GO:0010628: positive regulation of gene expression	1.40E-02
76	GO:2000028: regulation of photoperiodism, flowering	1.40E-02
77	GO:0009767: photosynthetic electron transport chain	1.40E-02
78	GO:0010588: cotyledon vascular tissue pattern formation	1.40E-02
79	GO:0010102: lateral root morphogenesis	1.40E-02
80	GO:0009785: blue light signaling pathway	1.40E-02
81	GO:0042546: cell wall biogenesis	1.47E-02
82	GO:0010207: photosystem II assembly	1.52E-02
83	GO:0048768: root hair cell tip growth	1.52E-02
84	GO:0048467: gynoecium development	1.52E-02
85	GO:0090351: seedling development	1.65E-02
86	GO:0009826: unidimensional cell growth	1.74E-02
87	GO:0009664: plant-type cell wall organization	1.78E-02
88	GO:0009736: cytokinin-activated signaling pathway	1.91E-02
89	GO:0080147: root hair cell development	1.92E-02
90	GO:0005992: trehalose biosynthetic process	1.92E-02
91	GO:0019953: sexual reproduction	2.06E-02
92	GO:0009908: flower development	2.19E-02
93	GO:0016114: terpenoid biosynthetic process	2.20E-02
94	GO:0006306: DNA methylation	2.20E-02
95	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.35E-02
96	GO:0010082: regulation of root meristem growth	2.50E-02
97	GO:0009693: ethylene biosynthetic process	2.50E-02
98	GO:0071215: cellular response to abscisic acid stimulus	2.50E-02
99	GO:0009416: response to light stimulus	2.54E-02
100	GO:0009740: gibberellic acid mediated signaling pathway	2.56E-02
101	GO:0042127: regulation of cell proliferation	2.65E-02
102	GO:0048443: stamen development	2.65E-02
103	GO:0006284: base-excision repair	2.65E-02
104	GO:0009624: response to nematode	2.72E-02
105	GO:0000271: polysaccharide biosynthetic process	2.97E-02
106	GO:0080022: primary root development	2.97E-02
107	GO:0010087: phloem or xylem histogenesis	2.97E-02
108	GO:0010118: stomatal movement	2.97E-02
109	GO:0045892: negative regulation of transcription, DNA-templated	3.06E-02
110	GO:0010182: sugar mediated signaling pathway	3.13E-02
111	GO:0009741: response to brassinosteroid	3.13E-02
112	GO:0010268: brassinosteroid homeostasis	3.13E-02
113	GO:0045489: pectin biosynthetic process	3.13E-02
114	GO:0010305: leaf vascular tissue pattern formation	3.13E-02
115	GO:0007275: multicellular organism development	3.20E-02
116	GO:0007018: microtubule-based movement	3.30E-02
117	GO:0009749: response to glucose	3.47E-02
118	GO:0007165: signal transduction	3.56E-02
119	GO:0016132: brassinosteroid biosynthetic process	3.64E-02
120	GO:0002229: defense response to oomycetes	3.64E-02
121	GO:0016042: lipid catabolic process	3.75E-02
122	GO:0010583: response to cyclopentenone	3.81E-02
123	GO:0032502: developmental process	3.81E-02
124	GO:0030163: protein catabolic process	3.99E-02
125	GO:0009639: response to red or far red light	4.17E-02
126	GO:0006464: cellular protein modification process	4.17E-02
127	GO:0009828: plant-type cell wall loosening	4.17E-02
128	GO:0009567: double fertilization forming a zygote and endosperm	4.17E-02
129	GO:0016125: sterol metabolic process	4.17E-02
130	GO:0051607: defense response to virus	4.54E-02
131	GO:0010027: thylakoid membrane organization	4.72E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0019203: carbohydrate phosphatase activity	3.60E-04
3	GO:0033857: diphosphoinositol-pentakisphosphate kinase activity	3.60E-04
4	GO:0010012: steroid 22-alpha hydroxylase activity	3.60E-04
5	GO:0000829: inositol heptakisphosphate kinase activity	3.60E-04
6	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.60E-04
7	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.60E-04
8	GO:0005227: calcium activated cation channel activity	3.60E-04
9	GO:0000828: inositol hexakisphosphate kinase activity	3.60E-04
10	GO:0019156: isoamylase activity	7.83E-04
11	GO:0017118: lipoyltransferase activity	7.83E-04
12	GO:0045543: gibberellin 2-beta-dioxygenase activity	7.83E-04
13	GO:0010296: prenylcysteine methylesterase activity	7.83E-04
14	GO:0016415: octanoyltransferase activity	7.83E-04
15	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	7.83E-04
16	GO:0008805: carbon-monoxide oxygenase activity	7.83E-04
17	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.26E-03
18	GO:0003979: UDP-glucose 6-dehydrogenase activity	1.27E-03
19	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.27E-03
20	GO:0045544: gibberellin 20-oxidase activity	1.83E-03
21	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	1.83E-03
22	GO:0005345: purine nucleobase transmembrane transporter activity	2.05E-03
23	GO:0004871: signal transducer activity	2.10E-03
24	GO:0010011: auxin binding	2.45E-03
25	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	2.45E-03
26	GO:0019199: transmembrane receptor protein kinase activity	2.45E-03
27	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.14E-03
28	GO:0008725: DNA-3-methyladenine glycosylase activity	3.14E-03
29	GO:0043565: sequence-specific DNA binding	3.45E-03
30	GO:0030332: cyclin binding	3.88E-03
31	GO:0004556: alpha-amylase activity	3.88E-03
32	GO:0004709: MAP kinase kinase kinase activity	3.88E-03
33	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	3.88E-03
34	GO:0016832: aldehyde-lyase activity	4.67E-03
35	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	4.67E-03
36	GO:0016413: O-acetyltransferase activity	6.21E-03
37	GO:0004672: protein kinase activity	6.69E-03
38	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	8.35E-03
39	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.35E-03
40	GO:0004805: trehalose-phosphatase activity	1.05E-02
41	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.19E-02
42	GO:0003725: double-stranded RNA binding	1.40E-02
43	GO:0043621: protein self-association	1.53E-02
44	GO:0003712: transcription cofactor activity	1.65E-02
45	GO:0004190: aspartic-type endopeptidase activity	1.65E-02
46	GO:0004674: protein serine/threonine kinase activity	1.70E-02
47	GO:0008134: transcription factor binding	1.92E-02
48	GO:0031418: L-ascorbic acid binding	1.92E-02
49	GO:0016298: lipase activity	1.98E-02
50	GO:0003964: RNA-directed DNA polymerase activity	2.20E-02
51	GO:0010333: terpene synthase activity	2.20E-02
52	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	2.35E-02
53	GO:0016301: kinase activity	2.52E-02
54	GO:0016874: ligase activity	2.56E-02
55	GO:0052689: carboxylic ester hydrolase activity	2.71E-02
56	GO:0005199: structural constituent of cell wall	3.13E-02
57	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	3.13E-02
58	GO:0042803: protein homodimerization activity	3.18E-02
59	GO:0016853: isomerase activity	3.30E-02
60	GO:0004722: protein serine/threonine phosphatase activity	3.36E-02
61	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.49E-02
62	GO:0016762: xyloglucan:xyloglucosyl transferase activity	3.64E-02
63	GO:0004518: nuclease activity	3.81E-02
64	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.87E-02
65	GO:0000156: phosphorelay response regulator activity	3.99E-02
66	GO:0003677: DNA binding	4.01E-02
67	GO:0016759: cellulose synthase activity	4.17E-02
68	GO:0016791: phosphatase activity	4.17E-02
69	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.36E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0009569: chloroplast starch grain	7.83E-04
3	GO:0008287: protein serine/threonine phosphatase complex	1.27E-03
4	GO:0030139: endocytic vesicle	1.27E-03
5	GO:0009531: secondary cell wall	1.83E-03
6	GO:0032585: multivesicular body membrane	1.83E-03
7	GO:0005634: nucleus	3.41E-03
8	GO:0009986: cell surface	5.52E-03
9	GO:0030095: chloroplast photosystem II	1.52E-02
10	GO:0005886: plasma membrane	1.72E-02
11	GO:0005875: microtubule associated complex	1.78E-02
12	GO:0009654: photosystem II oxygen evolving complex	2.06E-02
13	GO:0009532: plastid stroma	2.20E-02
14	GO:0005871: kinesin complex	2.81E-02
15	GO:0019898: extrinsic component of membrane	3.47E-02
16	GO:0009504: cell plate	3.47E-02
17	GO:0030529: intracellular ribonucleoprotein complex	4.72E-02