co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G34630

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0043619: regulation of transcription from RNA polymerase II promoter in response to oxidative stress	0.00E+00
2	GO:0080149: sucrose induced translational repression	0.00E+00
3	GO:0097250: mitochondrial respiratory chain supercomplex assembly	0.00E+00
4	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
5	GO:2000068: regulation of defense response to insect	0.00E+00
6	GO:0016192: vesicle-mediated transport	1.80E-06
7	GO:0030968: endoplasmic reticulum unfolded protein response	2.60E-06
8	GO:0072334: UDP-galactose transmembrane transport	1.14E-05
9	GO:0030433: ubiquitin-dependent ERAD pathway	4.70E-05
10	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	7.14E-05
11	GO:0019478: D-amino acid catabolic process	1.64E-04
12	GO:0051090: regulation of sequence-specific DNA binding transcription factor activity	1.64E-04
13	GO:0006680: glucosylceramide catabolic process	1.64E-04
14	GO:1900384: regulation of flavonol biosynthetic process	1.64E-04
15	GO:1900424: regulation of defense response to bacterium	1.64E-04
16	GO:0035266: meristem growth	1.64E-04
17	GO:0007292: female gamete generation	1.64E-04
18	GO:0042350: GDP-L-fucose biosynthetic process	1.64E-04
19	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.64E-04
20	GO:0015780: nucleotide-sugar transport	1.87E-04
21	GO:0051788: response to misfolded protein	3.73E-04
22	GO:0080026: response to indolebutyric acid	3.73E-04
23	GO:0009156: ribonucleoside monophosphate biosynthetic process	3.73E-04
24	GO:0006597: spermine biosynthetic process	3.73E-04
25	GO:0006568: tryptophan metabolic process	3.73E-04
26	GO:0009805: coumarin biosynthetic process	3.73E-04
27	GO:0042853: L-alanine catabolic process	3.73E-04
28	GO:0055046: microgametogenesis	4.03E-04
29	GO:0034976: response to endoplasmic reticulum stress	5.67E-04
30	GO:0009062: fatty acid catabolic process	6.11E-04
31	GO:0042351: 'de novo' GDP-L-fucose biosynthetic process	6.11E-04
32	GO:0010253: UDP-rhamnose biosynthetic process	6.11E-04
33	GO:0006651: diacylglycerol biosynthetic process	6.11E-04
34	GO:0060968: regulation of gene silencing	6.11E-04
35	GO:0009963: positive regulation of flavonoid biosynthetic process	8.73E-04
36	GO:0009226: nucleotide-sugar biosynthetic process	8.73E-04
37	GO:0010731: protein glutathionylation	8.73E-04
38	GO:0080024: indolebutyric acid metabolic process	8.73E-04
39	GO:0010971: positive regulation of G2/M transition of mitotic cell cycle	8.73E-04
40	GO:0006621: protein retention in ER lumen	1.16E-03
41	GO:0009165: nucleotide biosynthetic process	1.16E-03
42	GO:1902584: positive regulation of response to water deprivation	1.16E-03
43	GO:0045927: positive regulation of growth	1.47E-03
44	GO:0015031: protein transport	1.49E-03
45	GO:0006457: protein folding	1.63E-03
46	GO:0042176: regulation of protein catabolic process	1.80E-03
47	GO:0010315: auxin efflux	1.80E-03
48	GO:0006596: polyamine biosynthetic process	1.80E-03
49	GO:0009759: indole glucosinolate biosynthetic process	1.80E-03
50	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.80E-03
51	GO:0048827: phyllome development	1.80E-03
52	GO:0048232: male gamete generation	1.80E-03
53	GO:0006555: methionine metabolic process	1.80E-03
54	GO:0043248: proteasome assembly	1.80E-03
55	GO:0034389: lipid particle organization	2.17E-03
56	GO:0017148: negative regulation of translation	2.17E-03
57	GO:0080113: regulation of seed growth	2.17E-03
58	GO:0019509: L-methionine salvage from methylthioadenosine	2.17E-03
59	GO:0000338: protein deneddylation	2.55E-03
60	GO:0080186: developmental vegetative growth	2.55E-03
61	GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline	2.95E-03
62	GO:0010078: maintenance of root meristem identity	2.95E-03
63	GO:0010100: negative regulation of photomorphogenesis	3.37E-03
64	GO:0009699: phenylpropanoid biosynthetic process	3.37E-03
65	GO:0006002: fructose 6-phosphate metabolic process	3.37E-03
66	GO:0015996: chlorophyll catabolic process	3.37E-03
67	GO:0008202: steroid metabolic process	4.27E-03
68	GO:0010205: photoinhibition	4.27E-03
69	GO:0090332: stomatal closure	4.27E-03
70	GO:0000209: protein polyubiquitination	4.71E-03
71	GO:0048829: root cap development	4.75E-03
72	GO:0051555: flavonol biosynthetic process	4.75E-03
73	GO:0072593: reactive oxygen species metabolic process	5.25E-03
74	GO:0043085: positive regulation of catalytic activity	5.25E-03
75	GO:0010015: root morphogenesis	5.25E-03
76	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	5.48E-03
77	GO:0000266: mitochondrial fission	5.77E-03
78	GO:0009933: meristem structural organization	6.85E-03
79	GO:0045454: cell redox homeostasis	7.12E-03
80	GO:0090351: seedling development	7.41E-03
81	GO:0007033: vacuole organization	7.41E-03
82	GO:0010053: root epidermal cell differentiation	7.41E-03
83	GO:0009225: nucleotide-sugar metabolic process	7.41E-03
84	GO:0000162: tryptophan biosynthetic process	8.00E-03
85	GO:0009553: embryo sac development	8.42E-03
86	GO:0030150: protein import into mitochondrial matrix	8.59E-03
87	GO:0009116: nucleoside metabolic process	8.59E-03
88	GO:0019915: lipid storage	9.84E-03
89	GO:0009269: response to desiccation	9.84E-03
90	GO:0019748: secondary metabolic process	1.05E-02
91	GO:0009411: response to UV	1.11E-02
92	GO:0009058: biosynthetic process	1.15E-02
93	GO:0009561: megagametogenesis	1.18E-02
94	GO:0042127: regulation of cell proliferation	1.18E-02
95	GO:0009306: protein secretion	1.18E-02
96	GO:0048868: pollen tube development	1.39E-02
97	GO:0006413: translational initiation	1.40E-02
98	GO:0006623: protein targeting to vacuole	1.54E-02
99	GO:0006635: fatty acid beta-oxidation	1.62E-02
100	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.69E-02
101	GO:0016032: viral process	1.70E-02
102	GO:0030163: protein catabolic process	1.77E-02
103	GO:0019760: glucosinolate metabolic process	1.86E-02
104	GO:0009555: pollen development	1.92E-02
105	GO:0055114: oxidation-reduction process	2.02E-02
106	GO:0001666: response to hypoxia	2.10E-02
107	GO:0006906: vesicle fusion	2.27E-02
108	GO:0046686: response to cadmium ion	2.57E-02
109	GO:0010311: lateral root formation	2.63E-02
110	GO:0048767: root hair elongation	2.63E-02
111	GO:0006499: N-terminal protein myristoylation	2.72E-02
112	GO:0009867: jasmonic acid mediated signaling pathway	3.01E-02
113	GO:0045087: innate immune response	3.01E-02
114	GO:0006887: exocytosis	3.40E-02
115	GO:0006886: intracellular protein transport	3.57E-02
116	GO:0009640: photomorphogenesis	3.60E-02
117	GO:0009744: response to sucrose	3.60E-02
118	GO:0051707: response to other organism	3.60E-02
119	GO:0007275: multicellular organism development	3.62E-02
120	GO:0008643: carbohydrate transport	3.81E-02
121	GO:0009644: response to high light intensity	3.81E-02
122	GO:0009636: response to toxic substance	3.91E-02
123	GO:0009965: leaf morphogenesis	3.91E-02
124	GO:0009751: response to salicylic acid	4.20E-02
125	GO:0009408: response to heat	4.26E-02
126	GO:0048364: root development	4.44E-02
127	GO:0009809: lignin biosynthetic process	4.45E-02
128	GO:0006486: protein glycosylation	4.45E-02
129	GO:0009585: red, far-red light phototransduction	4.45E-02
130	GO:0051603: proteolysis involved in cellular protein catabolic process	4.56E-02
131	GO:0042742: defense response to bacterium	4.62E-02

Rank	GO Term	Adjusted P value
1	GO:0015165: pyrimidine nucleotide-sugar transmembrane transporter activity	0.00E+00
2	GO:0052684: L-serine hydro-lyase (adding indole, L-tryptophan-forming) activity	0.00E+00
3	GO:0005046: KDEL sequence binding	0.00E+00
4	GO:0051499: D-aminoacyl-tRNA deacylase activity	0.00E+00
5	GO:0016504: peptidase activator activity	0.00E+00
6	GO:0070577: lysine-acetylated histone binding	0.00E+00
7	GO:0019211: phosphatase activator activity	0.00E+00
8	GO:0005459: UDP-galactose transmembrane transporter activity	2.04E-07
9	GO:0005460: UDP-glucose transmembrane transporter activity	1.14E-05
10	GO:0008320: protein transmembrane transporter activity	9.52E-05
11	GO:1990381: ubiquitin-specific protease binding	1.64E-04
12	GO:0019784: NEDD8-specific protease activity	1.64E-04
13	GO:0102293: pheophytinase b activity	1.64E-04
14	GO:0004348: glucosylceramidase activity	1.64E-04
15	GO:0016768: spermine synthase activity	1.64E-04
16	GO:0050577: GDP-L-fucose synthase activity	1.64E-04
17	GO:0008805: carbon-monoxide oxygenase activity	3.73E-04
18	GO:0050377: UDP-glucose 4,6-dehydratase activity	3.73E-04
19	GO:1990585: hydroxyproline O-arabinosyltransferase activity	3.73E-04
20	GO:0047746: chlorophyllase activity	3.73E-04
21	GO:0010297: heteropolysaccharide binding	3.73E-04
22	GO:0008460: dTDP-glucose 4,6-dehydratase activity	3.73E-04
23	GO:0004766: spermidine synthase activity	3.73E-04
24	GO:0010280: UDP-L-rhamnose synthase activity	3.73E-04
25	GO:0000774: adenyl-nucleotide exchange factor activity	3.73E-04
26	GO:0003746: translation elongation factor activity	4.00E-04
27	GO:0045174: glutathione dehydrogenase (ascorbate) activity	6.11E-04
28	GO:0000030: mannosyltransferase activity	6.11E-04
29	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	6.11E-04
30	GO:0016887: ATPase activity	8.23E-04
31	GO:0004021: L-alanine:2-oxoglutarate aminotransferase activity	8.73E-04
32	GO:0004165: dodecenoyl-CoA delta-isomerase activity	8.73E-04
33	GO:0004749: ribose phosphate diphosphokinase activity	8.73E-04
34	GO:0003756: protein disulfide isomerase activity	9.73E-04
35	GO:0070628: proteasome binding	1.16E-03
36	GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway	1.16E-03
37	GO:0004834: tryptophan synthase activity	1.16E-03
38	GO:0046923: ER retention sequence binding	1.16E-03
39	GO:0051082: unfolded protein binding	1.24E-03
40	GO:0016853: isomerase activity	1.30E-03
41	GO:0004040: amidase activity	1.47E-03
42	GO:0036402: proteasome-activating ATPase activity	1.80E-03
43	GO:0003950: NAD+ ADP-ribosyltransferase activity	2.17E-03
44	GO:0004656: procollagen-proline 4-dioxygenase activity	2.17E-03
45	GO:0008195: phosphatidate phosphatase activity	2.17E-03
46	GO:0003872: 6-phosphofructokinase activity	2.55E-03
47	GO:0043295: glutathione binding	2.55E-03
48	GO:0005338: nucleotide-sugar transmembrane transporter activity	2.55E-03
49	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	2.78E-03
50	GO:0052747: sinapyl alcohol dehydrogenase activity	2.95E-03
51	GO:0008142: oxysterol binding	3.37E-03
52	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	3.52E-03
53	GO:0030234: enzyme regulator activity	4.75E-03
54	GO:0045551: cinnamyl-alcohol dehydrogenase activity	5.77E-03
55	GO:0005388: calcium-transporting ATPase activity	6.30E-03
56	GO:0031625: ubiquitin protein ligase binding	6.75E-03
57	GO:0017025: TBP-class protein binding	7.41E-03
58	GO:0004867: serine-type endopeptidase inhibitor activity	7.41E-03
59	GO:0004725: protein tyrosine phosphatase activity	8.00E-03
60	GO:0022857: transmembrane transporter activity	8.18E-03
61	GO:0031418: L-ascorbic acid binding	8.59E-03
62	GO:0051087: chaperone binding	9.21E-03
63	GO:0009055: electron carrier activity	1.02E-02
64	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.12E-02
65	GO:0030170: pyridoxal phosphate binding	1.21E-02
66	GO:0005102: receptor binding	1.25E-02
67	GO:0050662: coenzyme binding	1.47E-02
68	GO:0003824: catalytic activity	1.53E-02
69	GO:0004872: receptor activity	1.54E-02
70	GO:0003743: translation initiation factor activity	1.76E-02
71	GO:0051213: dioxygenase activity	2.10E-02
72	GO:0004721: phosphoprotein phosphatase activity	2.36E-02
73	GO:0005524: ATP binding	2.73E-02
74	GO:0050897: cobalt ion binding	2.82E-02
75	GO:0061630: ubiquitin protein ligase activity	3.04E-02
76	GO:0000149: SNARE binding	3.20E-02
77	GO:0004364: glutathione transferase activity	3.50E-02
78	GO:0005525: GTP binding	3.58E-02
79	GO:0005484: SNAP receptor activity	3.60E-02
80	GO:0042803: protein homodimerization activity	3.63E-02
81	GO:0051537: 2 iron, 2 sulfur cluster binding	3.81E-02
82	GO:0003924: GTPase activity	4.26E-02

Rank	GO Term	Adjusted P value
1	GO:0005783: endoplasmic reticulum	6.03E-07
2	GO:0005788: endoplasmic reticulum lumen	1.18E-05
3	GO:0005801: cis-Golgi network	7.14E-05
4	GO:0044322: endoplasmic reticulum quality control compartment	1.64E-04
5	GO:0001405: presequence translocase-associated import motor	1.64E-04
6	GO:0000836: Hrd1p ubiquitin ligase complex	1.64E-04
7	GO:0005794: Golgi apparatus	2.97E-04
8	GO:0030134: ER to Golgi transport vesicle	3.73E-04
9	GO:0030176: integral component of endoplasmic reticulum membrane	5.09E-04
10	GO:0005789: endoplasmic reticulum membrane	5.99E-04
11	GO:0000502: proteasome complex	8.05E-04
12	GO:0036513: Derlin-1 retrotranslocation complex	8.73E-04
13	GO:0016021: integral component of membrane	1.28E-03
14	GO:0005945: 6-phosphofructokinase complex	1.47E-03
15	GO:0016592: mediator complex	1.59E-03
16	GO:0032580: Golgi cisterna membrane	1.80E-03
17	GO:0031597: cytosolic proteasome complex	2.17E-03
18	GO:0030173: integral component of Golgi membrane	2.17E-03
19	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	2.55E-03
20	GO:0031595: nuclear proteasome complex	2.55E-03
21	GO:0031982: vesicle	2.95E-03
22	GO:0005886: plasma membrane	3.18E-03
23	GO:0005811: lipid particle	3.37E-03
24	GO:0031901: early endosome membrane	3.81E-03
25	GO:0008180: COP9 signalosome	3.81E-03
26	GO:0008540: proteasome regulatory particle, base subcomplex	4.27E-03
27	GO:0008541: proteasome regulatory particle, lid subcomplex	5.25E-03
28	GO:0043234: protein complex	8.00E-03
29	GO:0005839: proteasome core complex	9.84E-03
30	GO:0005774: vacuolar membrane	1.07E-02
31	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.18E-02
32	GO:0016020: membrane	1.24E-02
33	GO:0005615: extracellular space	1.69E-02
34	GO:0031902: late endosome membrane	3.40E-02
35	GO:0031201: SNARE complex	3.40E-02
36	GO:0005768: endosome	4.06E-02