co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G34590

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006399: tRNA metabolic process	0.00E+00
2	GO:1905421: regulation of plant organ morphogenesis	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0030155: regulation of cell adhesion	0.00E+00
5	GO:0006114: glycerol biosynthetic process	0.00E+00
6	GO:1905177: tracheary element differentiation	0.00E+00
7	GO:2001141: regulation of RNA biosynthetic process	6.48E-06
8	GO:0045038: protein import into chloroplast thylakoid membrane	2.01E-05
9	GO:0071482: cellular response to light stimulus	9.46E-05
10	GO:0043087: regulation of GTPase activity	1.20E-04
11	GO:0046901: tetrahydrofolylpolyglutamate biosynthetic process	1.20E-04
12	GO:0015969: guanosine tetraphosphate metabolic process	1.20E-04
13	GO:0006352: DNA-templated transcription, initiation	1.96E-04
14	GO:0010275: NAD(P)H dehydrogenase complex assembly	2.77E-04
15	GO:0060359: response to ammonium ion	2.77E-04
16	GO:0010207: photosystem II assembly	2.94E-04
17	GO:0009658: chloroplast organization	3.90E-04
18	GO:0009944: polarity specification of adaxial/abaxial axis	4.09E-04
19	GO:0043157: response to cation stress	4.58E-04
20	GO:0005977: glycogen metabolic process	4.58E-04
21	GO:0048281: inflorescence morphogenesis	4.58E-04
22	GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition	4.58E-04
23	GO:0010623: programmed cell death involved in cell development	4.58E-04
24	GO:0006730: one-carbon metabolic process	5.41E-04
25	GO:0009793: embryo development ending in seed dormancy	5.53E-04
26	GO:0010148: transpiration	6.57E-04
27	GO:0009226: nucleotide-sugar biosynthetic process	6.57E-04
28	GO:0010021: amylopectin biosynthetic process	8.72E-04
29	GO:0051781: positive regulation of cell division	8.72E-04
30	GO:0006661: phosphatidylinositol biosynthetic process	8.72E-04
31	GO:0006109: regulation of carbohydrate metabolic process	8.72E-04
32	GO:0010508: positive regulation of autophagy	8.72E-04
33	GO:0031122: cytoplasmic microtubule organization	8.72E-04
34	GO:1902183: regulation of shoot apical meristem development	1.10E-03
35	GO:0010158: abaxial cell fate specification	1.10E-03
36	GO:0010236: plastoquinone biosynthetic process	1.10E-03
37	GO:0009959: negative gravitropism	1.35E-03
38	GO:0006555: methionine metabolic process	1.35E-03
39	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.35E-03
40	GO:0010027: thylakoid membrane organization	1.39E-03
41	GO:0010103: stomatal complex morphogenesis	1.89E-03
42	GO:0009395: phospholipid catabolic process	1.89E-03
43	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.89E-03
44	GO:0070370: cellular heat acclimation	1.89E-03
45	GO:0006400: tRNA modification	1.89E-03
46	GO:0010492: maintenance of shoot apical meristem identity	2.19E-03
47	GO:0048564: photosystem I assembly	2.19E-03
48	GO:0042255: ribosome assembly	2.19E-03
49	GO:0006353: DNA-templated transcription, termination	2.19E-03
50	GO:0006605: protein targeting	2.19E-03
51	GO:0017004: cytochrome complex assembly	2.50E-03
52	GO:0001558: regulation of cell growth	2.50E-03
53	GO:0032544: plastid translation	2.50E-03
54	GO:0000373: Group II intron splicing	2.82E-03
55	GO:0048507: meristem development	2.82E-03
56	GO:0010206: photosystem II repair	2.82E-03
57	GO:2000024: regulation of leaf development	2.82E-03
58	GO:0035999: tetrahydrofolate interconversion	3.16E-03
59	GO:0009086: methionine biosynthetic process	3.16E-03
60	GO:0043069: negative regulation of programmed cell death	3.51E-03
61	GO:0019538: protein metabolic process	3.51E-03
62	GO:0019684: photosynthesis, light reaction	3.88E-03
63	GO:0009089: lysine biosynthetic process via diaminopimelate	3.88E-03
64	GO:0043085: positive regulation of catalytic activity	3.88E-03
65	GO:0045037: protein import into chloroplast stroma	4.26E-03
66	GO:0009767: photosynthetic electron transport chain	4.64E-03
67	GO:0010020: chloroplast fission	5.04E-03
68	GO:0006629: lipid metabolic process	5.29E-03
69	GO:0006833: water transport	5.88E-03
70	GO:0051302: regulation of cell division	6.76E-03
71	GO:0010431: seed maturation	7.22E-03
72	GO:0009790: embryo development	8.15E-03
73	GO:0001944: vasculature development	8.18E-03
74	GO:0009306: protein secretion	8.66E-03
75	GO:0010089: xylem development	8.66E-03
76	GO:0019722: calcium-mediated signaling	8.66E-03
77	GO:0006633: fatty acid biosynthetic process	8.77E-03
78	GO:0016117: carotenoid biosynthetic process	9.17E-03
79	GO:0008033: tRNA processing	9.68E-03
80	GO:0034220: ion transmembrane transport	9.68E-03
81	GO:0045489: pectin biosynthetic process	1.02E-02
82	GO:0010154: fruit development	1.02E-02
83	GO:0006662: glycerol ether metabolic process	1.02E-02
84	GO:0007059: chromosome segregation	1.07E-02
85	GO:0019252: starch biosynthetic process	1.13E-02
86	GO:0008654: phospholipid biosynthetic process	1.13E-02
87	GO:0032502: developmental process	1.24E-02
88	GO:0009630: gravitropism	1.24E-02
89	GO:0010583: response to cyclopentenone	1.24E-02
90	GO:0016032: viral process	1.24E-02
91	GO:0005975: carbohydrate metabolic process	1.27E-02
92	GO:0007267: cell-cell signaling	1.41E-02
93	GO:0016126: sterol biosynthetic process	1.54E-02
94	GO:0016311: dephosphorylation	1.79E-02
95	GO:0007568: aging	2.05E-02
96	GO:0015979: photosynthesis	2.12E-02
97	GO:0009637: response to blue light	2.19E-02
98	GO:0034599: cellular response to oxidative stress	2.26E-02
99	GO:0006631: fatty acid metabolic process	2.48E-02
100	GO:0010114: response to red light	2.63E-02
101	GO:0071555: cell wall organization	2.67E-02
102	GO:0042546: cell wall biogenesis	2.70E-02
103	GO:0009644: response to high light intensity	2.78E-02
104	GO:0009965: leaf morphogenesis	2.85E-02
105	GO:0006855: drug transmembrane transport	2.93E-02
106	GO:0009664: plant-type cell wall organization	3.09E-02
107	GO:0042538: hyperosmotic salinity response	3.09E-02
108	GO:0051603: proteolysis involved in cellular protein catabolic process	3.33E-02
109	GO:0006096: glycolytic process	3.66E-02
110	GO:0043086: negative regulation of catalytic activity	3.66E-02
111	GO:0048316: seed development	3.74E-02
112	GO:0006810: transport	4.29E-02
113	GO:0009735: response to cytokinin	4.44E-02
114	GO:0009416: response to light stimulus	4.84E-02

Rank	GO Term	Adjusted P value
1	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
2	GO:0005048: signal sequence binding	0.00E+00
3	GO:0043136: glycerol-3-phosphatase activity	0.00E+00
4	GO:0000121: glycerol-1-phosphatase activity	0.00E+00
5	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
6	GO:0004561: alpha-N-acetylglucosaminidase activity	0.00E+00
7	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
8	GO:0050613: delta14-sterol reductase activity	0.00E+00
9	GO:0001053: plastid sigma factor activity	1.22E-05
10	GO:0016987: sigma factor activity	1.22E-05
11	GO:0080132: fatty acid alpha-hydroxylase activity	1.20E-04
12	GO:0003881: CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity	1.20E-04
13	GO:0008568: microtubule-severing ATPase activity	1.20E-04
14	GO:0004489: methylenetetrahydrofolate reductase (NAD(P)H) activity	1.20E-04
15	GO:0004326: tetrahydrofolylpolyglutamate synthase activity	2.77E-04
16	GO:0004312: fatty acid synthase activity	2.77E-04
17	GO:0048531: beta-1,3-galactosyltransferase activity	2.77E-04
18	GO:0019156: isoamylase activity	2.77E-04
19	GO:0008839: 4-hydroxy-tetrahydrodipicolinate reductase	2.77E-04
20	GO:0008728: GTP diphosphokinase activity	2.77E-04
21	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.58E-04
22	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	4.58E-04
23	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	6.57E-04
24	GO:0019199: transmembrane receptor protein kinase activity	8.72E-04
25	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	8.72E-04
26	GO:0042277: peptide binding	8.72E-04
27	GO:0008374: O-acyltransferase activity	1.10E-03
28	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.10E-03
29	GO:0004556: alpha-amylase activity	1.35E-03
30	GO:0004462: lactoylglutathione lyase activity	1.35E-03
31	GO:0004017: adenylate kinase activity	1.61E-03
32	GO:0008312: 7S RNA binding	2.19E-03
33	GO:0030955: potassium ion binding	3.16E-03
34	GO:0004743: pyruvate kinase activity	3.16E-03
35	GO:0008047: enzyme activator activity	3.51E-03
36	GO:0004161: dimethylallyltranstransferase activity	3.88E-03
37	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	3.93E-03
38	GO:0008081: phosphoric diester hydrolase activity	4.64E-03
39	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	5.04E-03
40	GO:0004857: enzyme inhibitor activity	6.32E-03
41	GO:0005528: FK506 binding	6.32E-03
42	GO:0016829: lyase activity	7.55E-03
43	GO:0030570: pectate lyase activity	8.18E-03
44	GO:0003727: single-stranded RNA binding	8.66E-03
45	GO:0047134: protein-disulfide reductase activity	9.17E-03
46	GO:0016491: oxidoreductase activity	1.03E-02
47	GO:0004791: thioredoxin-disulfide reductase activity	1.07E-02
48	GO:0048038: quinone binding	1.18E-02
49	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.30E-02
50	GO:0015250: water channel activity	1.54E-02
51	GO:0008236: serine-type peptidase activity	1.79E-02
52	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.85E-02
53	GO:0005096: GTPase activator activity	1.92E-02
54	GO:0015238: drug transmembrane transporter activity	1.92E-02
55	GO:0004222: metalloendopeptidase activity	1.99E-02
56	GO:0005525: GTP binding	2.06E-02
57	GO:0003993: acid phosphatase activity	2.26E-02
58	GO:0004871: signal transducer activity	2.33E-02
59	GO:0004185: serine-type carboxypeptidase activity	2.63E-02
60	GO:0003924: GTPase activity	2.74E-02
61	GO:0035091: phosphatidylinositol binding	2.78E-02
62	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.93E-02
63	GO:0003824: catalytic activity	3.00E-02
64	GO:0003690: double-stranded DNA binding	3.33E-02
65	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.74E-02
66	GO:0004650: polygalacturonase activity	3.91E-02
67	GO:0016874: ligase activity	4.00E-02
68	GO:0015035: protein disulfide oxidoreductase activity	4.26E-02
69	GO:0003729: mRNA binding	4.36E-02
70	GO:0019843: rRNA binding	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	1.16E-17
3	GO:0009535: chloroplast thylakoid membrane	3.01E-08
4	GO:0009570: chloroplast stroma	1.70E-07
5	GO:0080085: signal recognition particle, chloroplast targeting	7.28E-07
6	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	9.46E-05
7	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.17E-04
8	GO:0009579: thylakoid	1.18E-04
9	GO:0009941: chloroplast envelope	8.18E-04
10	GO:0009543: chloroplast thylakoid lumen	9.52E-04
11	GO:0046658: anchored component of plasma membrane	2.02E-03
12	GO:0031977: thylakoid lumen	2.70E-03
13	GO:0031969: chloroplast membrane	3.23E-03
14	GO:0000311: plastid large ribosomal subunit	4.26E-03
15	GO:0031225: anchored component of membrane	4.56E-03
16	GO:0009574: preprophase band	4.64E-03
17	GO:0030176: integral component of endoplasmic reticulum membrane	5.46E-03
18	GO:0009654: photosystem II oxygen evolving complex	6.76E-03
19	GO:0042651: thylakoid membrane	6.76E-03
20	GO:0005623: cell	7.17E-03
21	GO:0009536: plastid	9.23E-03
22	GO:0005773: vacuole	1.02E-02
23	GO:0019898: extrinsic component of membrane	1.13E-02
24	GO:0010319: stromule	1.41E-02
25	GO:0030529: intracellular ribonucleoprotein complex	1.54E-02
26	GO:0019005: SCF ubiquitin ligase complex	1.85E-02
27	GO:0015934: large ribosomal subunit	2.05E-02
28	GO:0005886: plasma membrane	3.50E-02
29	GO:0009706: chloroplast inner membrane	4.17E-02