co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G33855

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
2	GO:0036172: thiamine salvage	0.00E+00
3	GO:0010070: zygote asymmetric cell division	7.07E-05
4	GO:0010069: zygote asymmetric cytokinesis in embryo sac	1.70E-04
5	GO:0009639: response to red or far red light	6.02E-04
6	GO:0009451: RNA modification	6.09E-04
7	GO:0009616: virus induced gene silencing	7.00E-04
8	GO:0009229: thiamine diphosphate biosynthetic process	7.00E-04
9	GO:0035194: posttranscriptional gene silencing by RNA	8.57E-04
10	GO:0009228: thiamine biosynthetic process	8.57E-04
11	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	1.02E-03
12	GO:0009088: threonine biosynthetic process	1.02E-03
13	GO:0006401: RNA catabolic process	1.19E-03
14	GO:0034968: histone lysine methylation	1.37E-03
15	GO:0010018: far-red light signaling pathway	1.97E-03
16	GO:0016571: histone methylation	1.97E-03
17	GO:0008202: steroid metabolic process	1.97E-03
18	GO:0016485: protein processing	2.41E-03
19	GO:0080188: RNA-directed DNA methylation	3.37E-03
20	GO:0042753: positive regulation of circadian rhythm	3.63E-03
21	GO:0006863: purine nucleobase transport	3.63E-03
22	GO:0006306: DNA methylation	4.44E-03
23	GO:0009416: response to light stimulus	4.46E-03
24	GO:0009686: gibberellin biosynthetic process	5.02E-03
25	GO:0048653: anther development	5.93E-03
26	GO:0009958: positive gravitropism	6.24E-03
27	GO:0080156: mitochondrial mRNA modification	7.22E-03
28	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	7.22E-03
29	GO:0002229: defense response to oomycetes	7.22E-03
30	GO:0009658: chloroplast organization	7.36E-03
31	GO:0031047: gene silencing by RNA	7.56E-03
32	GO:0016567: protein ubiquitination	1.24E-02
33	GO:0008152: metabolic process	1.49E-02
34	GO:0010114: response to red light	1.59E-02
35	GO:0006364: rRNA processing	1.97E-02
36	GO:0009585: red, far-red light phototransduction	1.97E-02
37	GO:0009740: gibberellic acid mediated signaling pathway	2.42E-02
38	GO:0051726: regulation of cell cycle	2.63E-02
39	GO:0009793: embryo development ending in seed dormancy	3.14E-02
40	GO:0009739: response to gibberellin	4.04E-02
41	GO:0007166: cell surface receptor signaling pathway	4.10E-02
42	GO:0006351: transcription, DNA-templated	4.63E-02
43	GO:0006468: protein phosphorylation	4.89E-02

Rank	GO Term	Adjusted P value
1	GO:0008859: exoribonuclease II activity	0.00E+00
2	GO:0004417: hydroxyethylthiazole kinase activity	0.00E+00
3	GO:0047807: cytokinin 7-beta-glucosyltransferase activity	7.07E-05
4	GO:0004795: threonine synthase activity	7.07E-05
5	GO:0080062: cytokinin 9-beta-glucosyltransferase activity	7.07E-05
6	GO:0008327: methyl-CpG binding	9.12E-05
7	GO:0008805: carbon-monoxide oxygenase activity	1.70E-04
8	GO:0004540: ribonuclease activity	2.46E-04
9	GO:0010428: methyl-CpNpG binding	2.86E-04
10	GO:0010429: methyl-CpNpN binding	2.86E-04
11	GO:0016707: gibberellin 3-beta-dioxygenase activity	2.86E-04
12	GO:0019899: enzyme binding	1.19E-03
13	GO:0008142: oxysterol binding	1.56E-03
14	GO:0003724: RNA helicase activity	1.56E-03
15	GO:0004871: signal transducer activity	1.76E-03
16	GO:0015020: glucuronosyltransferase activity	2.19E-03
17	GO:0004713: protein tyrosine kinase activity	2.19E-03
18	GO:0004519: endonuclease activity	2.40E-03
19	GO:0080043: quercetin 3-O-glucosyltransferase activity	2.54E-03
20	GO:0080044: quercetin 7-O-glucosyltransferase activity	2.54E-03
21	GO:0000175: 3'-5'-exoribonuclease activity	2.88E-03
22	GO:0004535: poly(A)-specific ribonuclease activity	3.12E-03
23	GO:0008134: transcription factor binding	3.89E-03
24	GO:0005345: purine nucleobase transmembrane transporter activity	4.17E-03
25	GO:0008194: UDP-glycosyltransferase activity	5.33E-03
26	GO:0003676: nucleic acid binding	5.56E-03
27	GO:0018024: histone-lysine N-methyltransferase activity	5.62E-03
28	GO:0019901: protein kinase binding	6.89E-03
29	GO:0008237: metallopeptidase activity	8.61E-03
30	GO:0004222: metalloendopeptidase activity	1.21E-02
31	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	1.21E-02
32	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.25E-02
33	GO:0004712: protein serine/threonine/tyrosine kinase activity	1.41E-02
34	GO:0042393: histone binding	1.46E-02
35	GO:0043621: protein self-association	1.68E-02
36	GO:0035091: phosphatidylinositol binding	1.68E-02
37	GO:0003723: RNA binding	1.68E-02
38	GO:0046872: metal ion binding	1.82E-02
39	GO:0004386: helicase activity	2.69E-02
40	GO:0016758: transferase activity, transferring hexosyl groups	2.91E-02
41	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.55E-02
42	GO:0044212: transcription regulatory region DNA binding	4.84E-02
43	GO:0008270: zinc ion binding	4.94E-02
44	GO:0008168: methyltransferase activity	4.95E-02

Rank	GO Term	Adjusted P value
1	GO:0010370: perinucleolar chromocenter	7.07E-05
2	GO:0000178: exosome (RNase complex)	7.00E-04
3	GO:0005720: nuclear heterochromatin	1.76E-03
4	GO:0043231: intracellular membrane-bounded organelle	2.44E-03
5	GO:0000419: DNA-directed RNA polymerase V complex	3.63E-03
6	GO:0000775: chromosome, centromeric region	4.73E-03
7	GO:0071944: cell periphery	7.90E-03
8	GO:0000932: P-body	9.34E-03
9	GO:0090406: pollen tube	1.59E-02
10	GO:0005759: mitochondrial matrix	3.49E-02
11	GO:0009507: chloroplast	4.94E-02