co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G32770

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0051484: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway involved in terpenoid biosynthetic process	0.00E+00
2	GO:0070125: mitochondrial translational elongation	0.00E+00
3	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
6	GO:0045184: establishment of protein localization	0.00E+00
7	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
8	GO:0000372: Group I intron splicing	0.00E+00
9	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
10	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
11	GO:0000373: Group II intron splicing	4.82E-06
12	GO:0006419: alanyl-tRNA aminoacylation	1.84E-04
13	GO:0042659: regulation of cell fate specification	1.84E-04
14	GO:0006438: valyl-tRNA aminoacylation	1.84E-04
15	GO:0090558: plant epidermis development	1.84E-04
16	GO:0070509: calcium ion import	1.84E-04
17	GO:0043266: regulation of potassium ion transport	1.84E-04
18	GO:0010063: positive regulation of trichoblast fate specification	1.84E-04
19	GO:2000021: regulation of ion homeostasis	1.84E-04
20	GO:0035987: endodermal cell differentiation	1.84E-04
21	GO:0001682: tRNA 5'-leader removal	4.15E-04
22	GO:0006420: arginyl-tRNA aminoacylation	4.15E-04
23	GO:0060359: response to ammonium ion	4.15E-04
24	GO:1900871: chloroplast mRNA modification	4.15E-04
25	GO:0006432: phenylalanyl-tRNA aminoacylation	4.15E-04
26	GO:0018026: peptidyl-lysine monomethylation	4.15E-04
27	GO:0080009: mRNA methylation	4.15E-04
28	GO:0009786: regulation of asymmetric cell division	4.15E-04
29	GO:0009451: RNA modification	5.21E-04
30	GO:0070588: calcium ion transmembrane transport	5.92E-04
31	GO:0007166: cell surface receptor signaling pathway	6.18E-04
32	GO:0009793: embryo development ending in seed dormancy	6.50E-04
33	GO:0006833: water transport	6.59E-04
34	GO:0043157: response to cation stress	6.76E-04
35	GO:0072661: protein targeting to plasma membrane	6.76E-04
36	GO:0030029: actin filament-based process	6.76E-04
37	GO:0031022: nuclear migration along microfilament	6.76E-04
38	GO:0090708: specification of plant organ axis polarity	6.76E-04
39	GO:0006696: ergosterol biosynthetic process	6.76E-04
40	GO:0010071: root meristem specification	9.65E-04
41	GO:0051513: regulation of monopolar cell growth	9.65E-04
42	GO:0007231: osmosensory signaling pathway	9.65E-04
43	GO:0009102: biotin biosynthetic process	9.65E-04
44	GO:0051639: actin filament network formation	9.65E-04
45	GO:0010239: chloroplast mRNA processing	9.65E-04
46	GO:0019048: modulation by virus of host morphology or physiology	9.65E-04
47	GO:0031048: chromatin silencing by small RNA	9.65E-04
48	GO:0016117: carotenoid biosynthetic process	1.22E-03
49	GO:0051764: actin crosslink formation	1.28E-03
50	GO:0051567: histone H3-K9 methylation	1.28E-03
51	GO:0008295: spermidine biosynthetic process	1.28E-03
52	GO:0030104: water homeostasis	1.28E-03
53	GO:0033500: carbohydrate homeostasis	1.28E-03
54	GO:0008033: tRNA processing	1.31E-03
55	GO:0010305: leaf vascular tissue pattern formation	1.41E-03
56	GO:0007018: microtubule-based movement	1.52E-03
57	GO:0016123: xanthophyll biosynthetic process	1.63E-03
58	GO:0009904: chloroplast accumulation movement	1.63E-03
59	GO:0010236: plastoquinone biosynthetic process	1.63E-03
60	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	2.01E-03
61	GO:0009959: negative gravitropism	2.01E-03
62	GO:0016554: cytidine to uridine editing	2.01E-03
63	GO:0042793: transcription from plastid promoter	2.01E-03
64	GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione	2.01E-03
65	GO:0016458: gene silencing	2.01E-03
66	GO:0051607: defense response to virus	2.36E-03
67	GO:2000067: regulation of root morphogenesis	2.41E-03
68	GO:0042372: phylloquinone biosynthetic process	2.41E-03
69	GO:0009903: chloroplast avoidance movement	2.41E-03
70	GO:0030488: tRNA methylation	2.41E-03
71	GO:0010027: thylakoid membrane organization	2.50E-03
72	GO:0048528: post-embryonic root development	2.83E-03
73	GO:0048437: floral organ development	2.83E-03
74	GO:0006400: tRNA modification	2.83E-03
75	GO:0015995: chlorophyll biosynthetic process	2.94E-03
76	GO:0055075: potassium ion homeostasis	3.28E-03
77	GO:0000105: histidine biosynthetic process	3.28E-03
78	GO:0048564: photosystem I assembly	3.28E-03
79	GO:0071482: cellular response to light stimulus	3.75E-03
80	GO:0009657: plastid organization	3.75E-03
81	GO:0032544: plastid translation	3.75E-03
82	GO:0009910: negative regulation of flower development	3.76E-03
83	GO:0000902: cell morphogenesis	4.25E-03
84	GO:0048507: meristem development	4.25E-03
85	GO:0006779: porphyrin-containing compound biosynthetic process	4.76E-03
86	GO:0009098: leucine biosynthetic process	4.76E-03
87	GO:1900865: chloroplast RNA modification	4.76E-03
88	GO:2000280: regulation of root development	4.76E-03
89	GO:0016571: histone methylation	4.76E-03
90	GO:0016573: histone acetylation	4.76E-03
91	GO:0009658: chloroplast organization	5.27E-03
92	GO:0031627: telomeric loop formation	5.30E-03
93	GO:0006782: protoporphyrinogen IX biosynthetic process	5.30E-03
94	GO:0009299: mRNA transcription	5.30E-03
95	GO:0030422: production of siRNA involved in RNA interference	5.30E-03
96	GO:0048829: root cap development	5.30E-03
97	GO:0009416: response to light stimulus	5.81E-03
98	GO:0006816: calcium ion transport	5.85E-03
99	GO:0006415: translational termination	5.85E-03
100	GO:0043085: positive regulation of catalytic activity	5.85E-03
101	GO:0009718: anthocyanin-containing compound biosynthetic process	7.03E-03
102	GO:0010075: regulation of meristem growth	7.03E-03
103	GO:0009725: response to hormone	7.03E-03
104	GO:0009691: cytokinin biosynthetic process	7.03E-03
105	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	7.23E-03
106	GO:0009266: response to temperature stimulus	7.64E-03
107	GO:0010207: photosystem II assembly	7.64E-03
108	GO:0006417: regulation of translation	7.91E-03
109	GO:0000162: tryptophan biosynthetic process	8.93E-03
110	GO:0006338: chromatin remodeling	9.60E-03
111	GO:0007010: cytoskeleton organization	9.60E-03
112	GO:0051017: actin filament bundle assembly	9.60E-03
113	GO:0046686: response to cadmium ion	1.02E-02
114	GO:0010073: meristem maintenance	1.03E-02
115	GO:0051302: regulation of cell division	1.03E-02
116	GO:0008299: isoprenoid biosynthetic process	1.03E-02
117	GO:0006418: tRNA aminoacylation for protein translation	1.03E-02
118	GO:0006396: RNA processing	1.05E-02
119	GO:0009742: brassinosteroid mediated signaling pathway	1.08E-02
120	GO:0006306: DNA methylation	1.10E-02
121	GO:0006468: protein phosphorylation	1.13E-02
122	GO:0006397: mRNA processing	1.20E-02
123	GO:0010082: regulation of root meristem growth	1.25E-02
124	GO:0042127: regulation of cell proliferation	1.32E-02
125	GO:0010118: stomatal movement	1.48E-02
126	GO:0034220: ion transmembrane transport	1.48E-02
127	GO:0009790: embryo development	1.49E-02
128	GO:0006342: chromatin silencing	1.56E-02
129	GO:0009958: positive gravitropism	1.56E-02
130	GO:0006662: glycerol ether metabolic process	1.56E-02
131	GO:0040008: regulation of growth	1.68E-02
132	GO:0009630: gravitropism	1.90E-02
133	GO:0016032: viral process	1.90E-02
134	GO:1901657: glycosyl compound metabolic process	1.99E-02
135	GO:0009816: defense response to bacterium, incompatible interaction	2.45E-02
136	GO:0016311: dephosphorylation	2.74E-02
137	GO:0048481: plant ovule development	2.84E-02
138	GO:0010311: lateral root formation	2.94E-02
139	GO:0005975: carbohydrate metabolic process	3.13E-02
140	GO:0006865: amino acid transport	3.26E-02
141	GO:0045087: innate immune response	3.36E-02
142	GO:0034599: cellular response to oxidative stress	3.47E-02
143	GO:0008283: cell proliferation	4.03E-02
144	GO:0009640: photomorphogenesis	4.03E-02
145	GO:0045454: cell redox homeostasis	4.05E-02
146	GO:0009965: leaf morphogenesis	4.38E-02
147	GO:0042538: hyperosmotic salinity response	4.73E-02
148	GO:0006364: rRNA processing	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
5	GO:0030604: 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity	0.00E+00
6	GO:0046905: phytoene synthase activity	0.00E+00
7	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
8	GO:0003723: RNA binding	9.33E-08
9	GO:0001872: (1->3)-beta-D-glucan binding	1.38E-05
10	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	1.84E-04
11	GO:0080042: ADP-glucose pyrophosphohydrolase activity	1.84E-04
12	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	1.84E-04
13	GO:0004813: alanine-tRNA ligase activity	1.84E-04
14	GO:0052381: tRNA dimethylallyltransferase activity	1.84E-04
15	GO:0051996: squalene synthase activity	1.84E-04
16	GO:0004832: valine-tRNA ligase activity	1.84E-04
17	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.84E-04
18	GO:0000049: tRNA binding	4.14E-04
19	GO:0003852: 2-isopropylmalate synthase activity	4.15E-04
20	GO:0080041: ADP-ribose pyrophosphohydrolase activity	4.15E-04
21	GO:0043425: bHLH transcription factor binding	4.15E-04
22	GO:0004814: arginine-tRNA ligase activity	4.15E-04
23	GO:0004766: spermidine synthase activity	4.15E-04
24	GO:0008805: carbon-monoxide oxygenase activity	4.15E-04
25	GO:0004826: phenylalanine-tRNA ligase activity	4.15E-04
26	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	4.15E-04
27	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	4.15E-04
28	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.51E-04
29	GO:0005262: calcium channel activity	4.70E-04
30	GO:0009982: pseudouridine synthase activity	4.70E-04
31	GO:0070402: NADPH binding	6.76E-04
32	GO:0004180: carboxypeptidase activity	6.76E-04
33	GO:0004148: dihydrolipoyl dehydrogenase activity	6.76E-04
34	GO:0016805: dipeptidase activity	6.76E-04
35	GO:0035197: siRNA binding	9.65E-04
36	GO:0016149: translation release factor activity, codon specific	9.65E-04
37	GO:0005524: ATP binding	9.97E-04
38	GO:0016279: protein-lysine N-methyltransferase activity	1.28E-03
39	GO:0019199: transmembrane receptor protein kinase activity	1.28E-03
40	GO:0004526: ribonuclease P activity	2.01E-03
41	GO:0016208: AMP binding	2.01E-03
42	GO:0004462: lactoylglutathione lyase activity	2.01E-03
43	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.23E-03
44	GO:0004656: procollagen-proline 4-dioxygenase activity	2.41E-03
45	GO:0019900: kinase binding	2.41E-03
46	GO:0004519: endonuclease activity	2.76E-03
47	GO:0030247: polysaccharide binding	2.94E-03
48	GO:0043022: ribosome binding	3.28E-03
49	GO:0008173: RNA methyltransferase activity	3.75E-03
50	GO:0003747: translation release factor activity	4.25E-03
51	GO:0016887: ATPase activity	4.72E-03
52	GO:0008047: enzyme activator activity	5.30E-03
53	GO:0003691: double-stranded telomeric DNA binding	5.85E-03
54	GO:0004521: endoribonuclease activity	6.43E-03
55	GO:0031072: heat shock protein binding	7.03E-03
56	GO:0003690: double-stranded DNA binding	7.39E-03
57	GO:0008266: poly(U) RNA binding	7.64E-03
58	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	7.64E-03
59	GO:0003777: microtubule motor activity	7.91E-03
60	GO:0031418: L-ascorbic acid binding	9.60E-03
61	GO:0005528: FK506 binding	9.60E-03
62	GO:0004176: ATP-dependent peptidase activity	1.10E-02
63	GO:0033612: receptor serine/threonine kinase binding	1.10E-02
64	GO:0003727: single-stranded RNA binding	1.32E-02
65	GO:0004812: aminoacyl-tRNA ligase activity	1.40E-02
66	GO:0047134: protein-disulfide reductase activity	1.40E-02
67	GO:0008080: N-acetyltransferase activity	1.56E-02
68	GO:0004791: thioredoxin-disulfide reductase activity	1.64E-02
69	GO:0016853: isomerase activity	1.64E-02
70	GO:0010181: FMN binding	1.64E-02
71	GO:0008017: microtubule binding	1.85E-02
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.99E-02
73	GO:0051015: actin filament binding	1.99E-02
74	GO:0008483: transaminase activity	2.17E-02
75	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	2.17E-02
76	GO:0008237: metallopeptidase activity	2.17E-02
77	GO:0005200: structural constituent of cytoskeleton	2.17E-02
78	GO:0005515: protein binding	2.19E-02
79	GO:0016597: amino acid binding	2.26E-02
80	GO:0015250: water channel activity	2.35E-02
81	GO:0016491: oxidoreductase activity	2.54E-02
82	GO:0102483: scopolin beta-glucosidase activity	2.64E-02
83	GO:0005096: GTPase activator activity	2.94E-02
84	GO:0004222: metalloendopeptidase activity	3.05E-02
85	GO:0030145: manganese ion binding	3.15E-02
86	GO:0050897: cobalt ion binding	3.15E-02
87	GO:0003746: translation elongation factor activity	3.36E-02
88	GO:0003697: single-stranded DNA binding	3.36E-02
89	GO:0003993: acid phosphatase activity	3.47E-02
90	GO:0008422: beta-glucosidase activity	3.58E-02
91	GO:0051539: 4 iron, 4 sulfur cluster binding	3.69E-02
92	GO:0051537: 2 iron, 2 sulfur cluster binding	4.26E-02
93	GO:0005198: structural molecule activity	4.38E-02
94	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	4.50E-02
95	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0009537: proplastid	0.00E+00
2	GO:0009507: chloroplast	1.79E-15
3	GO:0009570: chloroplast stroma	1.83E-07
4	GO:0030529: intracellular ribonucleoprotein complex	1.45E-05
5	GO:0009501: amyloplast	1.45E-04
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	4.15E-04
7	GO:0009513: etioplast	4.15E-04
8	GO:0009508: plastid chromosome	4.70E-04
9	GO:0009509: chromoplast	6.76E-04
10	GO:0030139: endocytic vesicle	6.76E-04
11	GO:0032585: multivesicular body membrane	9.65E-04
12	GO:0032432: actin filament bundle	9.65E-04
13	GO:0005719: nuclear euchromatin	9.65E-04
14	GO:0005871: kinesin complex	1.22E-03
15	GO:0009941: chloroplast envelope	1.23E-03
16	GO:0030663: COPI-coated vesicle membrane	1.28E-03
17	GO:0005886: plasma membrane	1.40E-03
18	GO:0009295: nucleoid	2.23E-03
19	GO:0005759: mitochondrial matrix	2.69E-03
20	GO:0009986: cell surface	2.83E-03
21	GO:0048226: Casparian strip	3.28E-03
22	GO:0000783: nuclear telomere cap complex	3.75E-03
23	GO:0046658: anchored component of plasma membrane	4.32E-03
24	GO:0015030: Cajal body	4.76E-03
25	GO:0000418: DNA-directed RNA polymerase IV complex	5.30E-03
26	GO:0030125: clathrin vesicle coat	5.30E-03
27	GO:0005884: actin filament	5.85E-03
28	GO:0031969: chloroplast membrane	6.92E-03
29	GO:0009532: plastid stroma	1.10E-02
30	GO:0005623: cell	1.31E-02
31	GO:0031965: nuclear membrane	1.73E-02
32	GO:0005778: peroxisomal membrane	2.17E-02
33	GO:0005874: microtubule	3.27E-02
34	GO:0031225: anchored component of membrane	4.08E-02
35	GO:0005856: cytoskeleton	4.38E-02