co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G32100

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031222: arabinan catabolic process	0.00E+00
2	GO:0042352: GDP-L-fucose salvage	0.00E+00
3	GO:0061157: mRNA destabilization	0.00E+00
4	GO:0043392: negative regulation of DNA binding	0.00E+00
5	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
8	GO:0080127: fruit septum development	0.00E+00
9	GO:0009734: auxin-activated signaling pathway	5.24E-09
10	GO:0009733: response to auxin	6.73E-09
11	GO:0040008: regulation of growth	7.14E-07
12	GO:0005983: starch catabolic process	2.73E-05
13	GO:1900033: negative regulation of trichome patterning	2.91E-05
14	GO:0046620: regulation of organ growth	9.36E-05
15	GO:1900865: chloroplast RNA modification	2.18E-04
16	GO:0048629: trichome patterning	3.15E-04
17	GO:0048497: maintenance of floral organ identity	4.69E-04
18	GO:0016554: cytidine to uridine editing	6.50E-04
19	GO:0015904: tetracycline transport	8.35E-04
20	GO:0000023: maltose metabolic process	8.35E-04
21	GO:0000025: maltose catabolic process	8.35E-04
22	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	8.35E-04
23	GO:0005980: glycogen catabolic process	8.35E-04
24	GO:0030198: extracellular matrix organization	8.35E-04
25	GO:0006438: valyl-tRNA aminoacylation	8.35E-04
26	GO:0046520: sphingoid biosynthetic process	8.35E-04
27	GO:0010480: microsporocyte differentiation	8.35E-04
28	GO:0042759: long-chain fatty acid biosynthetic process	8.35E-04
29	GO:0030488: tRNA methylation	8.59E-04
30	GO:0010098: suspensor development	1.09E-03
31	GO:0009686: gibberellin biosynthetic process	1.38E-03
32	GO:0006568: tryptophan metabolic process	1.81E-03
33	GO:2000123: positive regulation of stomatal complex development	1.81E-03
34	GO:0006741: NADP biosynthetic process	1.81E-03
35	GO:0009629: response to gravity	1.81E-03
36	GO:0080005: photosystem stoichiometry adjustment	1.81E-03
37	GO:0019388: galactose catabolic process	1.81E-03
38	GO:1900871: chloroplast mRNA modification	1.81E-03
39	GO:0007154: cell communication	1.81E-03
40	GO:0018026: peptidyl-lysine monomethylation	1.81E-03
41	GO:0071497: cellular response to freezing	1.81E-03
42	GO:0080009: mRNA methylation	1.81E-03
43	GO:0009786: regulation of asymmetric cell division	1.81E-03
44	GO:0031648: protein destabilization	1.81E-03
45	GO:0009741: response to brassinosteroid	2.08E-03
46	GO:0009638: phototropism	2.37E-03
47	GO:0009098: leucine biosynthetic process	2.37E-03
48	GO:0071554: cell wall organization or biogenesis	2.73E-03
49	GO:0009641: shade avoidance	2.77E-03
50	GO:0048829: root cap development	2.77E-03
51	GO:0032502: developmental process	2.97E-03
52	GO:0010583: response to cyclopentenone	2.97E-03
53	GO:0071398: cellular response to fatty acid	3.00E-03
54	GO:0048575: short-day photoperiodism, flowering	3.00E-03
55	GO:0019674: NAD metabolic process	3.00E-03
56	GO:0090506: axillary shoot meristem initiation	3.00E-03
57	GO:0033591: response to L-ascorbic acid	3.00E-03
58	GO:1902448: positive regulation of shade avoidance	3.00E-03
59	GO:0009416: response to light stimulus	3.75E-03
60	GO:0009725: response to hormone	4.20E-03
61	GO:0009767: photosynthetic electron transport chain	4.20E-03
62	GO:0010588: cotyledon vascular tissue pattern formation	4.20E-03
63	GO:2000012: regulation of auxin polar transport	4.20E-03
64	GO:0010102: lateral root morphogenesis	4.20E-03
65	GO:0010628: positive regulation of gene expression	4.20E-03
66	GO:0006006: glucose metabolic process	4.20E-03
67	GO:0019363: pyridine nucleotide biosynthetic process	4.37E-03
68	GO:0010371: regulation of gibberellin biosynthetic process	4.37E-03
69	GO:0051513: regulation of monopolar cell growth	4.37E-03
70	GO:0009102: biotin biosynthetic process	4.37E-03
71	GO:0010306: rhamnogalacturonan II biosynthetic process	4.37E-03
72	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	4.37E-03
73	GO:1990019: protein storage vacuole organization	4.37E-03
74	GO:0009590: detection of gravity	4.37E-03
75	GO:0010321: regulation of vegetative phase change	4.37E-03
76	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.46E-03
77	GO:0010020: chloroplast fission	4.75E-03
78	GO:0009755: hormone-mediated signaling pathway	5.92E-03
79	GO:1901141: regulation of lignin biosynthetic process	5.92E-03
80	GO:0042274: ribosomal small subunit biogenesis	5.92E-03
81	GO:0009765: photosynthesis, light harvesting	5.92E-03
82	GO:2000038: regulation of stomatal complex development	5.92E-03
83	GO:0042991: transcription factor import into nucleus	5.92E-03
84	GO:1902347: response to strigolactone	5.92E-03
85	GO:0042938: dipeptide transport	5.92E-03
86	GO:0016123: xanthophyll biosynthetic process	7.62E-03
87	GO:0010438: cellular response to sulfur starvation	7.62E-03
88	GO:0010375: stomatal complex patterning	7.62E-03
89	GO:0016131: brassinosteroid metabolic process	7.62E-03
90	GO:0016120: carotene biosynthetic process	7.62E-03
91	GO:0045487: gibberellin catabolic process	7.62E-03
92	GO:0006865: amino acid transport	7.93E-03
93	GO:0016042: lipid catabolic process	8.50E-03
94	GO:0007275: multicellular organism development	9.20E-03
95	GO:0010405: arabinogalactan protein metabolic process	9.47E-03
96	GO:0042549: photosystem II stabilization	9.47E-03
97	GO:0009959: negative gravitropism	9.47E-03
98	GO:0010358: leaf shaping	9.47E-03
99	GO:0009913: epidermal cell differentiation	9.47E-03
100	GO:1902456: regulation of stomatal opening	9.47E-03
101	GO:0042793: transcription from plastid promoter	9.47E-03
102	GO:0033365: protein localization to organelle	9.47E-03
103	GO:0003006: developmental process involved in reproduction	9.47E-03
104	GO:0018258: protein O-linked glycosylation via hydroxyproline	9.47E-03
105	GO:0006351: transcription, DNA-templated	9.52E-03
106	GO:0006631: fatty acid metabolic process	1.05E-02
107	GO:0042026: protein refolding	1.15E-02
108	GO:0009082: branched-chain amino acid biosynthetic process	1.15E-02
109	GO:0006458: 'de novo' protein folding	1.15E-02
110	GO:2000033: regulation of seed dormancy process	1.15E-02
111	GO:0031930: mitochondria-nucleus signaling pathway	1.15E-02
112	GO:0048509: regulation of meristem development	1.15E-02
113	GO:0009099: valine biosynthetic process	1.15E-02
114	GO:0009926: auxin polar transport	1.17E-02
115	GO:0010268: brassinosteroid homeostasis	1.34E-02
116	GO:0010182: sugar mediated signaling pathway	1.34E-02
117	GO:0010161: red light signaling pathway	1.36E-02
118	GO:0030497: fatty acid elongation	1.36E-02
119	GO:0048437: floral organ development	1.36E-02
120	GO:0030307: positive regulation of cell growth	1.36E-02
121	GO:0009793: embryo development ending in seed dormancy	1.45E-02
122	GO:0048825: cotyledon development	1.54E-02
123	GO:0000105: histidine biosynthetic process	1.59E-02
124	GO:0005978: glycogen biosynthetic process	1.59E-02
125	GO:0006402: mRNA catabolic process	1.59E-02
126	GO:0010439: regulation of glucosinolate biosynthetic process	1.59E-02
127	GO:0009819: drought recovery	1.59E-02
128	GO:0009690: cytokinin metabolic process	1.59E-02
129	GO:0009704: de-etiolation	1.59E-02
130	GO:2000070: regulation of response to water deprivation	1.59E-02
131	GO:0010099: regulation of photomorphogenesis	1.83E-02
132	GO:0009097: isoleucine biosynthetic process	1.83E-02
133	GO:0010100: negative regulation of photomorphogenesis	1.83E-02
134	GO:0006526: arginine biosynthetic process	1.83E-02
135	GO:0009739: response to gibberellin	1.84E-02
136	GO:0045892: negative regulation of transcription, DNA-templated	1.88E-02
137	GO:1901657: glycosyl compound metabolic process	1.89E-02
138	GO:0000902: cell morphogenesis	2.08E-02
139	GO:0051865: protein autoubiquitination	2.08E-02
140	GO:0010206: photosystem II repair	2.08E-02
141	GO:0048507: meristem development	2.08E-02
142	GO:0006783: heme biosynthetic process	2.08E-02
143	GO:0005982: starch metabolic process	2.34E-02
144	GO:0006779: porphyrin-containing compound biosynthetic process	2.34E-02
145	GO:0031425: chloroplast RNA processing	2.34E-02
146	GO:0010027: thylakoid membrane organization	2.40E-02
147	GO:0009740: gibberellic acid mediated signaling pathway	2.47E-02
148	GO:0006949: syncytium formation	2.62E-02
149	GO:0010162: seed dormancy process	2.62E-02
150	GO:0009299: mRNA transcription	2.62E-02
151	GO:0006782: protoporphyrinogen IX biosynthetic process	2.62E-02
152	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.62E-02
153	GO:0009826: unidimensional cell growth	2.82E-02
154	GO:0015995: chlorophyll biosynthetic process	2.83E-02
155	GO:0048573: photoperiodism, flowering	2.83E-02
156	GO:0009742: brassinosteroid mediated signaling pathway	2.87E-02
157	GO:0009773: photosynthetic electron transport in photosystem I	2.90E-02
158	GO:0009682: induced systemic resistance	2.90E-02
159	GO:0009073: aromatic amino acid family biosynthetic process	2.90E-02
160	GO:0048229: gametophyte development	2.90E-02
161	GO:0016311: dephosphorylation	2.98E-02
162	GO:0009658: chloroplast organization	2.98E-02
163	GO:0012501: programmed cell death	3.20E-02
164	GO:0015706: nitrate transport	3.20E-02
165	GO:0010582: floral meristem determinacy	3.20E-02
166	GO:0010105: negative regulation of ethylene-activated signaling pathway	3.20E-02
167	GO:0010075: regulation of meristem growth	3.51E-02
168	GO:0009785: blue light signaling pathway	3.51E-02
169	GO:0009691: cytokinin biosynthetic process	3.51E-02
170	GO:2000028: regulation of photoperiodism, flowering	3.51E-02
171	GO:0048366: leaf development	3.78E-02
172	GO:0009266: response to temperature stimulus	3.82E-02
173	GO:0009934: regulation of meristem structural organization	3.82E-02
174	GO:0048467: gynoecium development	3.82E-02
175	GO:0010223: secondary shoot formation	3.82E-02
176	GO:0006355: regulation of transcription, DNA-templated	3.88E-02
177	GO:0009867: jasmonic acid mediated signaling pathway	3.98E-02
178	GO:0090351: seedling development	4.14E-02
179	GO:0006863: purine nucleobase transport	4.48E-02
180	GO:0000162: tryptophan biosynthetic process	4.48E-02
181	GO:0010025: wax biosynthetic process	4.48E-02
182	GO:0005975: carbohydrate metabolic process	4.81E-02
183	GO:0005992: trehalose biosynthetic process	4.82E-02
184	GO:0080147: root hair cell development	4.82E-02
185	GO:0010187: negative regulation of seed germination	4.82E-02
186	GO:0051017: actin filament bundle assembly	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0015267: channel activity	0.00E+00
2	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
3	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0005363: maltose transmembrane transporter activity	0.00E+00
8	GO:0071633: dihydroceramidase activity	0.00E+00
9	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
10	GO:0050201: fucokinase activity	0.00E+00
11	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
12	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
13	GO:0047661: amino-acid racemase activity	0.00E+00
14	GO:0001872: (1->3)-beta-D-glucan binding	1.89E-04
15	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	6.28E-04
16	GO:2001070: starch binding	6.50E-04
17	GO:0010012: steroid 22-alpha hydroxylase activity	8.35E-04
18	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	8.35E-04
19	GO:0000170: sphingosine hydroxylase activity	8.35E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	8.35E-04
21	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	8.35E-04
22	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	8.35E-04
23	GO:0005227: calcium activated cation channel activity	8.35E-04
24	GO:0004425: indole-3-glycerol-phosphate synthase activity	8.35E-04
25	GO:0008184: glycogen phosphorylase activity	8.35E-04
26	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	8.35E-04
27	GO:0050308: sugar-phosphatase activity	8.35E-04
28	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	8.35E-04
29	GO:0004134: 4-alpha-glucanotransferase activity	8.35E-04
30	GO:0004645: phosphorylase activity	8.35E-04
31	GO:0009374: biotin binding	8.35E-04
32	GO:0019203: carbohydrate phosphatase activity	8.35E-04
33	GO:0052381: tRNA dimethylallyltransferase activity	8.35E-04
34	GO:0008395: steroid hydroxylase activity	8.35E-04
35	GO:0010313: phytochrome binding	8.35E-04
36	GO:0004832: valine-tRNA ligase activity	8.35E-04
37	GO:0042736: NADH kinase activity	8.35E-04
38	GO:0003852: 2-isopropylmalate synthase activity	1.81E-03
39	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.81E-03
40	GO:0043425: bHLH transcription factor binding	1.81E-03
41	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.81E-03
42	GO:0008805: carbon-monoxide oxygenase activity	1.81E-03
43	GO:0042284: sphingolipid delta-4 desaturase activity	1.81E-03
44	GO:0008493: tetracycline transporter activity	1.81E-03
45	GO:0004614: phosphoglucomutase activity	1.81E-03
46	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.81E-03
47	GO:0019200: carbohydrate kinase activity	1.81E-03
48	GO:0017118: lipoyltransferase activity	1.81E-03
49	GO:0043621: protein self-association	2.79E-03
50	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	3.00E-03
51	GO:0005504: fatty acid binding	3.00E-03
52	GO:0016413: O-acetyltransferase activity	4.08E-03
53	GO:0045544: gibberellin 20-oxidase activity	4.37E-03
54	GO:0052655: L-valine transaminase activity	4.37E-03
55	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	4.37E-03
56	GO:0052656: L-isoleucine transaminase activity	4.37E-03
57	GO:0052654: L-leucine transaminase activity	4.37E-03
58	GO:0016279: protein-lysine N-methyltransferase activity	5.92E-03
59	GO:0042936: dipeptide transporter activity	5.92E-03
60	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.92E-03
61	GO:0045430: chalcone isomerase activity	5.92E-03
62	GO:0004084: branched-chain-amino-acid transaminase activity	5.92E-03
63	GO:0019199: transmembrane receptor protein kinase activity	5.92E-03
64	GO:0046556: alpha-L-arabinofuranosidase activity	5.92E-03
65	GO:0004335: galactokinase activity	5.92E-03
66	GO:0005345: purine nucleobase transmembrane transporter activity	7.33E-03
67	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	7.62E-03
68	GO:0003989: acetyl-CoA carboxylase activity	7.62E-03
69	GO:0004176: ATP-dependent peptidase activity	8.07E-03
70	GO:0033612: receptor serine/threonine kinase binding	8.07E-03
71	GO:0044212: transcription regulatory region DNA binding	8.10E-03
72	GO:0003700: transcription factor activity, sequence-specific DNA binding	8.24E-03
73	GO:0080030: methyl indole-3-acetate esterase activity	9.47E-03
74	GO:1990714: hydroxyproline O-galactosyltransferase activity	9.47E-03
75	GO:0004709: MAP kinase kinase kinase activity	9.47E-03
76	GO:0016788: hydrolase activity, acting on ester bonds	9.54E-03
77	GO:0004519: endonuclease activity	1.06E-02
78	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	1.15E-02
79	GO:0016832: aldehyde-lyase activity	1.15E-02
80	GO:0003886: DNA (cytosine-5-)-methyltransferase activity	1.15E-02
81	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.16E-02
82	GO:0001085: RNA polymerase II transcription factor binding	1.34E-02
83	GO:0052689: carboxylic ester hydrolase activity	1.60E-02
84	GO:0016298: lipase activity	1.78E-02
85	GO:0003951: NAD+ kinase activity	1.83E-02
86	GO:0008173: RNA methyltransferase activity	1.83E-02
87	GO:0015171: amino acid transmembrane transporter activity	1.94E-02
88	GO:0004871: signal transducer activity	1.98E-02
89	GO:0016759: cellulose synthase activity	2.01E-02
90	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	2.08E-02
91	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	2.08E-02
92	GO:0008237: metallopeptidase activity	2.14E-02
93	GO:0005200: structural constituent of cytoskeleton	2.14E-02
94	GO:0004805: trehalose-phosphatase activity	2.62E-02
95	GO:0102483: scopolin beta-glucosidase activity	2.83E-02
96	GO:0030247: polysaccharide binding	2.83E-02
97	GO:0044183: protein binding involved in protein folding	2.90E-02
98	GO:0047372: acylglycerol lipase activity	2.90E-02
99	GO:0009055: electron carrier activity	2.94E-02
100	GO:0004222: metalloendopeptidase activity	3.46E-02
101	GO:0003725: double-stranded RNA binding	3.51E-02
102	GO:0015266: protein channel activity	3.51E-02
103	GO:0043565: sequence-specific DNA binding	3.52E-02
104	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	3.63E-02
105	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	3.63E-02
106	GO:0008266: poly(U) RNA binding	3.82E-02
107	GO:0003723: RNA binding	3.87E-02
108	GO:0004190: aspartic-type endopeptidase activity	4.14E-02
109	GO:0003712: transcription cofactor activity	4.14E-02
110	GO:0008146: sulfotransferase activity	4.14E-02
111	GO:0008422: beta-glucosidase activity	4.34E-02
112	GO:0051536: iron-sulfur cluster binding	4.82E-02
113	GO:0031418: L-ascorbic acid binding	4.82E-02
114	GO:0005528: FK506 binding	4.82E-02
115	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.82E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	2.92E-05
3	GO:0009654: photosystem II oxygen evolving complex	9.75E-04
4	GO:0009941: chloroplast envelope	1.80E-03
5	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.81E-03
6	GO:0031357: integral component of chloroplast inner membrane	1.81E-03
7	GO:0009534: chloroplast thylakoid	2.16E-03
8	GO:0019898: extrinsic component of membrane	2.50E-03
9	GO:0019897: extrinsic component of plasma membrane	3.00E-03
10	GO:0008287: protein serine/threonine phosphatase complex	3.00E-03
11	GO:0030139: endocytic vesicle	3.00E-03
12	GO:0009317: acetyl-CoA carboxylase complex	3.00E-03
13	GO:0009570: chloroplast stroma	3.30E-03
14	GO:0032585: multivesicular body membrane	4.37E-03
15	GO:0009544: chloroplast ATP synthase complex	5.92E-03
16	GO:0015629: actin cytoskeleton	9.67E-03
17	GO:0009986: cell surface	1.36E-02
18	GO:0009501: amyloplast	1.59E-02
19	GO:0010494: cytoplasmic stress granule	2.08E-02
20	GO:0010319: stromule	2.14E-02
21	GO:0046658: anchored component of plasma membrane	2.36E-02
22	GO:0030529: intracellular ribonucleoprotein complex	2.40E-02
23	GO:0005667: transcription factor complex	2.69E-02
24	GO:0090404: pollen tube tip	2.90E-02
25	GO:0009536: plastid	3.05E-02
26	GO:0005578: proteinaceous extracellular matrix	3.51E-02
27	GO:0009508: plastid chromosome	3.51E-02
28	GO:0009543: chloroplast thylakoid lumen	3.54E-02
29	GO:0030095: chloroplast photosystem II	3.82E-02
30	GO:0005875: microtubule associated complex	4.48E-02
31	GO:0031977: thylakoid lumen	4.72E-02