Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G31865

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0018063: cytochrome c-heme linkage0.00E+00
2GO:0010398: xylogalacturonan metabolic process0.00E+00
3GO:1900409: positive regulation of cellular response to oxidative stress0.00E+00
4GO:0072722: response to amitrole0.00E+00
5GO:0071985: multivesicular body sorting pathway0.00E+00
6GO:0006216: cytidine catabolic process0.00E+00
7GO:0000162: tryptophan biosynthetic process1.33E-06
8GO:0009407: toxin catabolic process2.76E-06
9GO:0046686: response to cadmium ion4.85E-06
10GO:0046283: anthocyanin-containing compound metabolic process5.95E-05
11GO:0006564: L-serine biosynthetic process5.95E-05
12GO:0010150: leaf senescence1.23E-04
13GO:1900056: negative regulation of leaf senescence1.59E-04
14GO:0009851: auxin biosynthetic process2.11E-04
15GO:0010230: alternative respiration2.29E-04
16GO:0042964: thioredoxin reduction2.29E-04
17GO:0006680: glucosylceramide catabolic process2.29E-04
18GO:0033306: phytol metabolic process2.29E-04
19GO:0051607: defense response to virus3.54E-04
20GO:0016192: vesicle-mediated transport4.81E-04
21GO:0052544: defense response by callose deposition in cell wall4.90E-04
22GO:0015865: purine nucleotide transport5.10E-04
23GO:1902000: homogentisate catabolic process5.10E-04
24GO:0033512: L-lysine catabolic process to acetyl-CoA via saccharopine5.10E-04
25GO:0051252: regulation of RNA metabolic process5.10E-04
26GO:0019632: shikimate metabolic process5.10E-04
27GO:0006807: nitrogen compound metabolic process6.36E-04
28GO:0010102: lateral root morphogenesis6.36E-04
29GO:0042742: defense response to bacterium6.76E-04
30GO:0002230: positive regulation of defense response to virus by host8.29E-04
31GO:0055074: calcium ion homeostasis8.29E-04
32GO:0006556: S-adenosylmethionine biosynthetic process8.29E-04
33GO:0061158: 3'-UTR-mediated mRNA destabilization8.29E-04
34GO:0072661: protein targeting to plasma membrane8.29E-04
35GO:0006065: UDP-glucuronate biosynthetic process8.29E-04
36GO:0010272: response to silver ion8.29E-04
37GO:0009072: aromatic amino acid family metabolic process8.29E-04
38GO:0052546: cell wall pectin metabolic process8.29E-04
39GO:0006591: ornithine metabolic process8.29E-04
40GO:0006874: cellular calcium ion homeostasis1.08E-03
41GO:0055114: oxidation-reduction process1.11E-03
42GO:0009636: response to toxic substance1.15E-03
43GO:1902290: positive regulation of defense response to oomycetes1.18E-03
44GO:0016998: cell wall macromolecule catabolic process1.18E-03
45GO:0070301: cellular response to hydrogen peroxide1.18E-03
46GO:0046902: regulation of mitochondrial membrane permeability1.18E-03
47GO:0010188: response to microbial phytotoxin1.57E-03
48GO:0006878: cellular copper ion homeostasis1.57E-03
49GO:0045227: capsule polysaccharide biosynthetic process1.57E-03
50GO:0048830: adventitious root development1.57E-03
51GO:0033358: UDP-L-arabinose biosynthetic process1.57E-03
52GO:0010600: regulation of auxin biosynthetic process1.57E-03
53GO:1901002: positive regulation of response to salt stress1.57E-03
54GO:0031365: N-terminal protein amino acid modification2.01E-03
55GO:0009228: thiamine biosynthetic process2.48E-03
56GO:0002238: response to molecule of fungal origin2.48E-03
57GO:0009972: cytidine deamination2.48E-03
58GO:0009759: indole glucosinolate biosynthetic process2.48E-03
59GO:0006561: proline biosynthetic process2.48E-03
60GO:0010264: myo-inositol hexakisphosphate biosynthetic process2.48E-03
61GO:0009920: cell plate formation involved in plant-type cell wall biogenesis2.48E-03
62GO:0045454: cell redox homeostasis2.85E-03
63GO:0009082: branched-chain amino acid biosynthetic process2.97E-03
64GO:0009423: chorismate biosynthetic process2.97E-03
65GO:0009099: valine biosynthetic process2.97E-03
66GO:0006886: intracellular protein transport2.99E-03
67GO:0009615: response to virus3.41E-03
68GO:1900057: positive regulation of leaf senescence3.50E-03
69GO:0050829: defense response to Gram-negative bacterium3.50E-03
70GO:0080186: developmental vegetative growth3.50E-03
71GO:0071669: plant-type cell wall organization or biogenesis3.50E-03
72GO:0009627: systemic acquired resistance3.80E-03
73GO:0043068: positive regulation of programmed cell death4.06E-03
74GO:0006102: isocitrate metabolic process4.06E-03
75GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline4.06E-03
76GO:0009819: drought recovery4.06E-03
77GO:0010120: camalexin biosynthetic process4.65E-03
78GO:0009097: isoleucine biosynthetic process4.65E-03
79GO:0010204: defense response signaling pathway, resistance gene-independent4.65E-03
80GO:0017004: cytochrome complex assembly4.65E-03
81GO:0007186: G-protein coupled receptor signaling pathway4.65E-03
82GO:0019430: removal of superoxide radicals4.65E-03
83GO:0010497: plasmodesmata-mediated intercellular transport4.65E-03
84GO:0010043: response to zinc ion5.13E-03
85GO:0010112: regulation of systemic acquired resistance5.27E-03
86GO:0046685: response to arsenic-containing substance5.27E-03
87GO:0051865: protein autoubiquitination5.27E-03
88GO:0019432: triglyceride biosynthetic process5.27E-03
89GO:0009617: response to bacterium5.65E-03
90GO:0006099: tricarboxylic acid cycle5.88E-03
91GO:1900426: positive regulation of defense response to bacterium5.91E-03
92GO:0009098: leucine biosynthetic process5.91E-03
93GO:2000280: regulation of root development5.91E-03
94GO:0006032: chitin catabolic process6.58E-03
95GO:0009688: abscisic acid biosynthetic process6.58E-03
96GO:0009641: shade avoidance6.58E-03
97GO:0051707: response to other organism7.25E-03
98GO:0009073: aromatic amino acid family biosynthetic process7.28E-03
99GO:0000272: polysaccharide catabolic process7.28E-03
100GO:0009684: indoleacetic acid biosynthetic process7.28E-03
101GO:0009682: induced systemic resistance7.28E-03
102GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.00E-03
103GO:0006790: sulfur compound metabolic process8.00E-03
104GO:0012501: programmed cell death8.00E-03
105GO:0006979: response to oxidative stress8.33E-03
106GO:2000028: regulation of photoperiodism, flowering8.75E-03
107GO:0009718: anthocyanin-containing compound biosynthetic process8.75E-03
108GO:0032436: positive regulation of proteasomal ubiquitin-dependent protein catabolic process8.75E-03
109GO:0009651: response to salt stress9.37E-03
110GO:0090351: seedling development1.03E-02
111GO:0046854: phosphatidylinositol phosphorylation1.03E-02
112GO:0007033: vacuole organization1.03E-02
113GO:0009225: nucleotide-sugar metabolic process1.03E-02
114GO:0006417: regulation of translation1.08E-02
115GO:0005992: trehalose biosynthetic process1.20E-02
116GO:0080147: root hair cell development1.20E-02
117GO:0009626: plant-type hypersensitive response1.23E-02
118GO:0015031: protein transport1.25E-02
119GO:0009620: response to fungus1.27E-02
120GO:0051302: regulation of cell division1.28E-02
121GO:0006730: one-carbon metabolic process1.46E-02
122GO:0030433: ubiquitin-dependent ERAD pathway1.46E-02
123GO:0071456: cellular response to hypoxia1.46E-02
124GO:0010227: floral organ abscission1.56E-02
125GO:0006012: galactose metabolic process1.56E-02
126GO:0009693: ethylene biosynthetic process1.56E-02
127GO:0006629: lipid metabolic process1.70E-02
128GO:0042147: retrograde transport, endosome to Golgi1.75E-02
129GO:0009058: biosynthetic process1.85E-02
130GO:0042631: cellular response to water deprivation1.85E-02
131GO:0008152: metabolic process1.92E-02
132GO:0006662: glycerol ether metabolic process1.95E-02
133GO:0045489: pectin biosynthetic process1.95E-02
134GO:0048544: recognition of pollen2.05E-02
135GO:0006814: sodium ion transport2.05E-02
136GO:0006623: protein targeting to vacuole2.16E-02
137GO:0010183: pollen tube guidance2.16E-02
138GO:0000302: response to reactive oxygen species2.27E-02
139GO:0006891: intra-Golgi vesicle-mediated transport2.27E-02
140GO:0009630: gravitropism2.37E-02
141GO:0045490: pectin catabolic process2.42E-02
142GO:1901657: glycosyl compound metabolic process2.48E-02
143GO:0071281: cellular response to iron ion2.48E-02
144GO:0007166: cell surface receptor signaling pathway2.77E-02
145GO:0006906: vesicle fusion3.19E-02
146GO:0006888: ER to Golgi vesicle-mediated transport3.31E-02
147GO:0016049: cell growth3.43E-02
148GO:0009817: defense response to fungus, incompatible interaction3.56E-02
149GO:0010311: lateral root formation3.68E-02
150GO:0007568: aging3.94E-02
151GO:0006970: response to osmotic stress4.02E-02
152GO:0009409: response to cold4.19E-02
153GO:0034599: cellular response to oxidative stress4.34E-02
154GO:0006839: mitochondrial transport4.62E-02
155GO:0006887: exocytosis4.76E-02
156GO:0010200: response to chitin4.78E-02
157GO:0042542: response to hydrogen peroxide4.90E-02
RankGO TermAdjusted P value
1GO:0003855: 3-dehydroquinate dehydratase activity0.00E+00
2GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
3GO:0016034: maleylacetoacetate isomerase activity0.00E+00
4GO:0051766: inositol trisphosphate kinase activity0.00E+00
5GO:0051670: inulinase activity0.00E+00
6GO:0004764: shikimate 3-dehydrogenase (NADP+) activity0.00E+00
7GO:0051765: inositol tetrakisphosphate kinase activity0.00E+00
8GO:0047844: deoxycytidine deaminase activity0.00E+00
9GO:0019172: glyoxalase III activity2.46E-06
10GO:0004364: glutathione transferase activity6.91E-06
11GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity8.74E-05
12GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity8.74E-05
13GO:0008320: protein transmembrane transporter activity1.59E-04
14GO:0043295: glutathione binding1.59E-04
15GO:0004348: glucosylceramidase activity2.29E-04
16GO:0031219: levanase activity2.29E-04
17GO:2001147: camalexin binding2.29E-04
18GO:0004149: dihydrolipoyllysine-residue succinyltransferase activity2.29E-04
19GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity2.29E-04
20GO:0016229: steroid dehydrogenase activity2.29E-04
21GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity2.29E-04
22GO:0010179: IAA-Ala conjugate hydrolase activity2.29E-04
23GO:2001227: quercitrin binding2.29E-04
24GO:0004425: indole-3-glycerol-phosphate synthase activity2.29E-04
25GO:0000824: inositol tetrakisphosphate 3-kinase activity2.29E-04
26GO:0033984: indole-3-glycerol-phosphate lyase activity2.29E-04
27GO:0070401: NADP+ binding2.29E-04
28GO:0051669: fructan beta-fructosidase activity2.29E-04
29GO:0047326: inositol tetrakisphosphate 5-kinase activity2.29E-04
30GO:0032266: phosphatidylinositol-3-phosphate binding2.29E-04
31GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity2.29E-04
32GO:0004601: peroxidase activity2.94E-04
33GO:0047443: 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity5.10E-04
34GO:0052739: phosphatidylserine 1-acylhydrolase activity5.10E-04
35GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity5.10E-04
36GO:0004617: phosphoglycerate dehydrogenase activity5.10E-04
37GO:0008428: ribonuclease inhibitor activity5.10E-04
38GO:0005217: intracellular ligand-gated ion channel activity8.00E-04
39GO:0004970: ionotropic glutamate receptor activity8.00E-04
40GO:0004049: anthranilate synthase activity8.29E-04
41GO:0003979: UDP-glucose 6-dehydrogenase activity8.29E-04
42GO:0004478: methionine adenosyltransferase activity8.29E-04
43GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.29E-04
44GO:0004449: isocitrate dehydrogenase (NAD+) activity1.18E-03
45GO:0005432: calcium:sodium antiporter activity1.18E-03
46GO:0010178: IAA-amino acid conjugate hydrolase activity1.18E-03
47GO:0016656: monodehydroascorbate reductase (NADH) activity1.18E-03
48GO:0052656: L-isoleucine transaminase activity1.18E-03
49GO:0052654: L-leucine transaminase activity1.18E-03
50GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity1.18E-03
51GO:0052655: L-valine transaminase activity1.18E-03
52GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.57E-03
53GO:0004031: aldehyde oxidase activity1.57E-03
54GO:0050302: indole-3-acetaldehyde oxidase activity1.57E-03
55GO:0004930: G-protein coupled receptor activity1.57E-03
56GO:0050373: UDP-arabinose 4-epimerase activity1.57E-03
57GO:0004834: tryptophan synthase activity1.57E-03
58GO:0004084: branched-chain-amino-acid transaminase activity1.57E-03
59GO:0005471: ATP:ADP antiporter activity2.01E-03
60GO:0008374: O-acyltransferase activity2.01E-03
61GO:0008948: oxaloacetate decarboxylase activity2.01E-03
62GO:0004791: thioredoxin-disulfide reductase activity2.06E-03
63GO:0015035: protein disulfide oxidoreductase activity2.34E-03
64GO:0035252: UDP-xylosyltransferase activity2.48E-03
65GO:0003824: catalytic activity2.87E-03
66GO:0004602: glutathione peroxidase activity2.97E-03
67GO:0003978: UDP-glucose 4-epimerase activity2.97E-03
68GO:0004144: diacylglycerol O-acyltransferase activity2.97E-03
69GO:0004656: procollagen-proline 4-dioxygenase activity2.97E-03
70GO:0051920: peroxiredoxin activity2.97E-03
71GO:0004126: cytidine deaminase activity2.97E-03
72GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity2.97E-03
73GO:0008237: metallopeptidase activity3.04E-03
74GO:0008235: metalloexopeptidase activity3.50E-03
75GO:0004806: triglyceride lipase activity4.01E-03
76GO:0004033: aldo-keto reductase (NADP) activity4.06E-03
77GO:0015491: cation:cation antiporter activity4.06E-03
78GO:0004714: transmembrane receptor protein tyrosine kinase activity4.06E-03
79GO:0016209: antioxidant activity4.06E-03
80GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.65E-03
81GO:0050661: NADP binding6.41E-03
82GO:0004568: chitinase activity6.58E-03
83GO:0008794: arsenate reductase (glutaredoxin) activity7.28E-03
84GO:0004177: aminopeptidase activity7.28E-03
85GO:0031072: heat shock protein binding8.75E-03
86GO:0051287: NAD binding8.78E-03
87GO:0050660: flavin adenine dinucleotide binding9.46E-03
88GO:0031624: ubiquitin conjugating enzyme binding9.52E-03
89GO:0008061: chitin binding1.03E-02
90GO:0043130: ubiquitin binding1.20E-02
91GO:0051082: unfolded protein binding1.40E-02
92GO:0016301: kinase activity1.47E-02
93GO:0030246: carbohydrate binding1.47E-02
94GO:0003727: single-stranded RNA binding1.65E-02
95GO:0004499: N,N-dimethylaniline monooxygenase activity1.65E-02
96GO:0047134: protein-disulfide reductase activity1.75E-02
97GO:0030170: pyridoxal phosphate binding1.94E-02
98GO:0005199: structural constituent of cell wall1.95E-02
99GO:0030276: clathrin binding1.95E-02
100GO:0008080: N-acetyltransferase activity1.95E-02
101GO:0001085: RNA polymerase II transcription factor binding1.95E-02
102GO:0004518: nuclease activity2.37E-02
103GO:0005509: calcium ion binding2.39E-02
104GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor2.48E-02
105GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity2.71E-02
106GO:0016597: amino acid binding2.83E-02
107GO:0030247: polysaccharide binding3.31E-02
108GO:0004683: calmodulin-dependent protein kinase activity3.31E-02
109GO:0102483: scopolin beta-glucosidase activity3.31E-02
110GO:0046872: metal ion binding3.35E-02
111GO:0004222: metalloendopeptidase activity3.81E-02
112GO:0030145: manganese ion binding3.94E-02
113GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding3.94E-02
114GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.94E-02
115GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.21E-02
116GO:0008422: beta-glucosidase activity4.48E-02
117GO:0000149: SNARE binding4.48E-02
118GO:0004712: protein serine/threonine/tyrosine kinase activity4.48E-02
119GO:0061630: ubiquitin protein ligase activity4.86E-02
RankGO TermAdjusted P value
1GO:0030121: AP-1 adaptor complex0.00E+00
2GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane1.59E-04
3GO:0005886: plasma membrane1.79E-04
4GO:0045252: oxoglutarate dehydrogenase complex2.29E-04
5GO:0032580: Golgi cisterna membrane3.02E-04
6GO:0005788: endoplasmic reticulum lumen4.10E-04
7GO:0000814: ESCRT II complex5.10E-04
8GO:0005950: anthranilate synthase complex5.10E-04
9GO:0009530: primary cell wall8.29E-04
10GO:0005829: cytosol9.27E-04
11GO:0005783: endoplasmic reticulum1.19E-03
12GO:0005789: endoplasmic reticulum membrane1.70E-03
13GO:0009570: chloroplast stroma2.57E-03
14GO:0005794: Golgi apparatus3.78E-03
15GO:0031090: organelle membrane5.27E-03
16GO:0031901: early endosome membrane5.27E-03
17GO:0017119: Golgi transport complex6.58E-03
18GO:0009506: plasmodesma7.57E-03
19GO:0031012: extracellular matrix8.75E-03
20GO:0005769: early endosome1.11E-02
21GO:0005618: cell wall1.34E-02
22GO:0005770: late endosome1.95E-02
23GO:0005737: cytoplasm2.06E-02
24GO:0019898: extrinsic component of membrane2.16E-02
25GO:0009504: cell plate2.16E-02
26GO:0031965: nuclear membrane2.16E-02
27GO:0005768: endosome2.31E-02
28GO:0071944: cell periphery2.48E-02
29GO:0048046: apoplast2.90E-02
30GO:0005667: transcription factor complex3.19E-02
31GO:0000151: ubiquitin ligase complex3.56E-02
32GO:0009505: plant-type cell wall3.75E-02
33GO:0016021: integral component of membrane3.77E-02
34GO:0000139: Golgi membrane4.19E-02
35GO:0031201: SNARE complex4.76E-02
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Gene type



Gene DE type