co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G31360

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009090: homoserine biosynthetic process	2.41E-05
2	GO:0031537: regulation of anthocyanin metabolic process	6.16E-05
3	GO:0050793: regulation of developmental process	6.16E-05
4	GO:1900033: negative regulation of trichome patterning	6.16E-05
5	GO:0009067: aspartate family amino acid biosynthetic process	1.62E-04
6	GO:0010021: amylopectin biosynthetic process	2.21E-04
7	GO:0010600: regulation of auxin biosynthetic process	2.21E-04
8	GO:0071368: cellular response to cytokinin stimulus	2.84E-04
9	GO:0080113: regulation of seed growth	4.20E-04
10	GO:0009088: threonine biosynthetic process	4.20E-04
11	GO:0080036: regulation of cytokinin-activated signaling pathway	4.20E-04
12	GO:0010244: response to low fluence blue light stimulus by blue low-fluence system	4.20E-04
13	GO:0010161: red light signaling pathway	4.92E-04
14	GO:0009704: de-etiolation	5.68E-04
15	GO:0010928: regulation of auxin mediated signaling pathway	5.68E-04
16	GO:0009086: methionine biosynthetic process	8.07E-04
17	GO:0010380: regulation of chlorophyll biosynthetic process	8.07E-04
18	GO:0009089: lysine biosynthetic process via diaminopimelate	9.78E-04
19	GO:0018107: peptidyl-threonine phosphorylation	1.16E-03
20	GO:0080147: root hair cell development	1.55E-03
21	GO:0051260: protein homooligomerization	1.76E-03
22	GO:0019748: secondary metabolic process	1.87E-03
23	GO:0010017: red or far-red light signaling pathway	1.87E-03
24	GO:0010082: regulation of root meristem growth	1.98E-03
25	GO:0080022: primary root development	2.33E-03
26	GO:0019252: starch biosynthetic process	2.70E-03
27	GO:0015995: chlorophyll biosynthetic process	4.05E-03
28	GO:0000160: phosphorelay signal transduction system	4.49E-03
29	GO:0055114: oxidation-reduction process	4.70E-03
30	GO:0007568: aging	4.80E-03
31	GO:0009736: cytokinin-activated signaling pathway	7.47E-03
32	GO:0009585: red, far-red light phototransduction	7.47E-03
33	GO:0006813: potassium ion transport	7.47E-03
34	GO:0048367: shoot system development	8.59E-03
35	GO:0018105: peptidyl-serine phosphorylation	9.75E-03
36	GO:0008380: RNA splicing	1.59E-02
37	GO:0009723: response to ethylene	2.12E-02
38	GO:0044550: secondary metabolite biosynthetic process	2.37E-02
39	GO:0032259: methylation	2.86E-02
40	GO:0009408: response to heat	2.95E-02
41	GO:0006397: mRNA processing	3.04E-02
42	GO:0048364: root development	3.04E-02
43	GO:0006357: regulation of transcription from RNA polymerase II promoter	3.60E-02
44	GO:0009735: response to cytokinin	4.16E-02
45	GO:0006351: transcription, DNA-templated	4.26E-02
46	GO:0035556: intracellular signal transduction	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity	2.41E-05
2	GO:0016868: intramolecular transferase activity, phosphotransferases	6.16E-05
3	GO:0033201: alpha-1,4-glucan synthase activity	6.16E-05
4	GO:0004412: homoserine dehydrogenase activity	6.16E-05
5	GO:0010277: chlorophyllide a oxygenase [overall] activity	1.09E-04
6	GO:0004373: glycogen (starch) synthase activity	1.09E-04
7	GO:0004072: aspartate kinase activity	1.62E-04
8	GO:0019201: nucleotide kinase activity	1.62E-04
9	GO:0009011: starch synthase activity	2.21E-04
10	GO:0004045: aminoacyl-tRNA hydrolase activity	2.21E-04
11	GO:0004017: adenylate kinase activity	4.20E-04
12	GO:0004602: glutathione peroxidase activity	4.20E-04
13	GO:0004033: aldo-keto reductase (NADP) activity	5.68E-04
14	GO:0015386: potassium:proton antiporter activity	9.78E-04
15	GO:0015079: potassium ion transmembrane transporter activity	1.65E-03
16	GO:0005249: voltage-gated potassium channel activity	2.33E-03
17	GO:0000156: phosphorelay response regulator activity	3.08E-03
18	GO:0016597: amino acid binding	3.49E-03
19	GO:0050661: NADP binding	5.59E-03
20	GO:0004185: serine-type carboxypeptidase activity	6.08E-03
21	GO:0051537: 2 iron, 2 sulfur cluster binding	6.42E-03
22	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	8.59E-03
23	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	1.14E-02
24	GO:0005506: iron ion binding	1.20E-02
25	GO:0044212: transcription regulatory region DNA binding	1.22E-02
26	GO:0016491: oxidoreductase activity	1.61E-02
27	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.66E-02
28	GO:0008168: methyltransferase activity	1.86E-02
29	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	2.54E-02
30	GO:0016709: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	2.68E-02
31	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.74E-02
32	GO:0003700: transcription factor activity, sequence-specific DNA binding	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	6.73E-09
2	GO:0009535: chloroplast thylakoid membrane	4.90E-08
3	GO:0010287: plastoglobule	5.16E-05
4	GO:0009941: chloroplast envelope	9.84E-05
5	GO:0008076: voltage-gated potassium channel complex	1.62E-04
6	GO:0009570: chloroplast stroma	2.12E-04
7	GO:0009501: amyloplast	5.68E-04
8	GO:0009534: chloroplast thylakoid	9.87E-04
9	GO:0005875: microtubule associated complex	1.45E-03
10	GO:0042651: thylakoid membrane	1.65E-03
11	GO:0030529: intracellular ribonucleoprotein complex	3.63E-03
12	GO:0009706: chloroplast inner membrane	9.56E-03
13	GO:0031969: chloroplast membrane	2.23E-02
14	GO:0005777: peroxisome	4.89E-02