co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G31150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0044774: mitotic DNA integrity checkpoint	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0006907: pinocytosis	0.00E+00
6	GO:0045014: negative regulation of transcription by glucose	0.00E+00
7	GO:0000819: sister chromatid segregation	0.00E+00
8	GO:0006438: valyl-tRNA aminoacylation	4.37E-04
9	GO:0006426: glycyl-tRNA aminoacylation	4.37E-04
10	GO:0034757: negative regulation of iron ion transport	4.37E-04
11	GO:0010726: positive regulation of hydrogen peroxide metabolic process	4.37E-04
12	GO:0010583: response to cyclopentenone	8.59E-04
13	GO:0010271: regulation of chlorophyll catabolic process	9.44E-04
14	GO:0080009: mRNA methylation	9.44E-04
15	GO:0043039: tRNA aminoacylation	9.44E-04
16	GO:0080117: secondary growth	1.54E-03
17	GO:0006518: peptide metabolic process	1.54E-03
18	GO:0030029: actin filament-based process	1.54E-03
19	GO:0009658: chloroplast organization	1.61E-03
20	GO:0009887: animal organ morphogenesis	1.78E-03
21	GO:0016556: mRNA modification	2.22E-03
22	GO:0006424: glutamyl-tRNA aminoacylation	2.22E-03
23	GO:2000904: regulation of starch metabolic process	2.22E-03
24	GO:0010321: regulation of vegetative phase change	2.22E-03
25	GO:0010371: regulation of gibberellin biosynthetic process	2.22E-03
26	GO:0010239: chloroplast mRNA processing	2.22E-03
27	GO:0044211: CTP salvage	2.22E-03
28	GO:0007276: gamete generation	2.22E-03
29	GO:0006863: purine nucleobase transport	2.23E-03
30	GO:0044206: UMP salvage	2.99E-03
31	GO:0042991: transcription factor import into nucleus	2.99E-03
32	GO:0006021: inositol biosynthetic process	2.99E-03
33	GO:0009956: radial pattern formation	2.99E-03
34	GO:0009755: hormone-mediated signaling pathway	2.99E-03
35	GO:0071215: cellular response to abscisic acid stimulus	3.58E-03
36	GO:0009696: salicylic acid metabolic process	3.83E-03
37	GO:0048497: maintenance of floral organ identity	3.83E-03
38	GO:0010438: cellular response to sulfur starvation	3.83E-03
39	GO:0042127: regulation of cell proliferation	3.89E-03
40	GO:0006206: pyrimidine nucleobase metabolic process	4.74E-03
41	GO:1902456: regulation of stomatal opening	4.74E-03
42	GO:0048831: regulation of shoot system development	4.74E-03
43	GO:0003006: developmental process involved in reproduction	4.74E-03
44	GO:0010942: positive regulation of cell death	4.74E-03
45	GO:0016554: cytidine to uridine editing	4.74E-03
46	GO:0009736: cytokinin-activated signaling pathway	4.81E-03
47	GO:0009793: embryo development ending in seed dormancy	5.41E-03
48	GO:0031930: mitochondria-nucleus signaling pathway	5.72E-03
49	GO:0048509: regulation of meristem development	5.72E-03
50	GO:0071554: cell wall organization or biogenesis	6.08E-03
51	GO:0000082: G1/S transition of mitotic cell cycle	6.76E-03
52	GO:0010098: suspensor development	6.76E-03
53	GO:0010444: guard mother cell differentiation	6.76E-03
54	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	6.76E-03
55	GO:0000712: resolution of meiotic recombination intermediates	6.76E-03
56	GO:0045995: regulation of embryonic development	6.76E-03
57	GO:1900056: negative regulation of leaf senescence	6.76E-03
58	GO:0009733: response to auxin	7.07E-03
59	GO:0009819: drought recovery	7.86E-03
60	GO:0042255: ribosome assembly	7.86E-03
61	GO:0046620: regulation of organ growth	7.86E-03
62	GO:0006353: DNA-templated transcription, termination	7.86E-03
63	GO:0006402: mRNA catabolic process	7.86E-03
64	GO:0010439: regulation of glucosinolate biosynthetic process	7.86E-03
65	GO:0009704: de-etiolation	7.86E-03
66	GO:2000070: regulation of response to water deprivation	7.86E-03
67	GO:0010492: maintenance of shoot apical meristem identity	7.86E-03
68	GO:0000105: histidine biosynthetic process	7.86E-03
69	GO:0007186: G-protein coupled receptor signaling pathway	9.03E-03
70	GO:0032544: plastid translation	9.03E-03
71	GO:0071482: cellular response to light stimulus	9.03E-03
72	GO:0006355: regulation of transcription, DNA-templated	9.39E-03
73	GO:0048507: meristem development	1.03E-02
74	GO:0046916: cellular transition metal ion homeostasis	1.03E-02
75	GO:0048589: developmental growth	1.03E-02
76	GO:0009056: catabolic process	1.03E-02
77	GO:0048573: photoperiodism, flowering	1.04E-02
78	GO:0006351: transcription, DNA-templated	1.06E-02
79	GO:1900865: chloroplast RNA modification	1.15E-02
80	GO:0016571: histone methylation	1.15E-02
81	GO:0016573: histone acetylation	1.15E-02
82	GO:0000160: phosphorelay signal transduction system	1.21E-02
83	GO:0006782: protoporphyrinogen IX biosynthetic process	1.29E-02
84	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.29E-02
85	GO:0009641: shade avoidance	1.29E-02
86	GO:0006949: syncytium formation	1.29E-02
87	GO:0006259: DNA metabolic process	1.29E-02
88	GO:0010192: mucilage biosynthetic process	1.29E-02
89	GO:0009682: induced systemic resistance	1.43E-02
90	GO:0006265: DNA topological change	1.43E-02
91	GO:0009750: response to fructose	1.43E-02
92	GO:0040008: regulation of growth	1.43E-02
93	GO:0071555: cell wall organization	1.56E-02
94	GO:0009451: RNA modification	1.56E-02
95	GO:0005983: starch catabolic process	1.57E-02
96	GO:0045037: protein import into chloroplast stroma	1.57E-02
97	GO:0010582: floral meristem determinacy	1.57E-02
98	GO:0010152: pollen maturation	1.57E-02
99	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.57E-02
100	GO:0006790: sulfur compound metabolic process	1.57E-02
101	GO:0006312: mitotic recombination	1.57E-02
102	GO:0012501: programmed cell death	1.57E-02
103	GO:0010102: lateral root morphogenesis	1.72E-02
104	GO:0009691: cytokinin biosynthetic process	1.72E-02
105	GO:2000028: regulation of photoperiodism, flowering	1.72E-02
106	GO:0009933: meristem structural organization	1.87E-02
107	GO:0010540: basipetal auxin transport	1.87E-02
108	GO:0009266: response to temperature stimulus	1.87E-02
109	GO:0006302: double-strand break repair	1.87E-02
110	GO:0048467: gynoecium development	1.87E-02
111	GO:0009926: auxin polar transport	1.90E-02
112	GO:0009744: response to sucrose	1.90E-02
113	GO:0042546: cell wall biogenesis	1.97E-02
114	GO:0009825: multidimensional cell growth	2.03E-02
115	GO:0046854: phosphatidylinositol phosphorylation	2.03E-02
116	GO:0009636: response to toxic substance	2.13E-02
117	GO:0009965: leaf morphogenesis	2.13E-02
118	GO:0009833: plant-type primary cell wall biogenesis	2.20E-02
119	GO:0006338: chromatin remodeling	2.36E-02
120	GO:0051017: actin filament bundle assembly	2.36E-02
121	GO:0005992: trehalose biosynthetic process	2.36E-02
122	GO:0019953: sexual reproduction	2.54E-02
123	GO:0006418: tRNA aminoacylation for protein translation	2.54E-02
124	GO:0006874: cellular calcium ion homeostasis	2.54E-02
125	GO:0051321: meiotic cell cycle	2.71E-02
126	GO:0016114: terpenoid biosynthetic process	2.71E-02
127	GO:0010431: seed maturation	2.71E-02
128	GO:0009734: auxin-activated signaling pathway	2.78E-02
129	GO:0009909: regulation of flower development	2.83E-02
130	GO:0016226: iron-sulfur cluster assembly	2.89E-02
131	GO:0007005: mitochondrion organization	2.89E-02
132	GO:0009686: gibberellin biosynthetic process	3.08E-02
133	GO:0010082: regulation of root meristem growth	3.08E-02
134	GO:0009625: response to insect	3.08E-02
135	GO:0010091: trichome branching	3.27E-02
136	GO:0048443: stamen development	3.27E-02
137	GO:0070417: cellular response to cold	3.46E-02
138	GO:0016117: carotenoid biosynthetic process	3.46E-02
139	GO:0008033: tRNA processing	3.66E-02
140	GO:0010087: phloem or xylem histogenesis	3.66E-02
141	GO:0010118: stomatal movement	3.66E-02
142	GO:0051726: regulation of cell cycle	3.85E-02
143	GO:0010305: leaf vascular tissue pattern formation	3.86E-02
144	GO:0009958: positive gravitropism	3.86E-02
145	GO:0010182: sugar mediated signaling pathway	3.86E-02
146	GO:0009741: response to brassinosteroid	3.86E-02
147	GO:0007059: chromosome segregation	4.06E-02
148	GO:0048825: cotyledon development	4.27E-02
149	GO:0009749: response to glucose	4.27E-02
150	GO:0045892: negative regulation of transcription, DNA-templated	4.38E-02
151	GO:0002229: defense response to oomycetes	4.48E-02
152	GO:0032502: developmental process	4.69E-02
153	GO:1901657: glycosyl compound metabolic process	4.91E-02
154	GO:0030163: protein catabolic process	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0004401: histidinol-phosphatase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
4	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
5	GO:0009899: ent-kaurene synthase activity	0.00E+00
6	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
7	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.37E-04
8	GO:0052381: tRNA dimethylallyltransferase activity	4.37E-04
9	GO:0004818: glutamate-tRNA ligase activity	4.37E-04
10	GO:0004832: valine-tRNA ligase activity	4.37E-04
11	GO:0004820: glycine-tRNA ligase activity	4.37E-04
12	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.37E-04
13	GO:0003723: RNA binding	5.64E-04
14	GO:0008805: carbon-monoxide oxygenase activity	9.44E-04
15	GO:0008934: inositol monophosphate 1-phosphatase activity	9.44E-04
16	GO:0052833: inositol monophosphate 4-phosphatase activity	9.44E-04
17	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	9.44E-04
18	GO:0050736: O-malonyltransferase activity	9.44E-04
19	GO:0009884: cytokinin receptor activity	9.44E-04
20	GO:0019156: isoamylase activity	9.44E-04
21	GO:0010296: prenylcysteine methylesterase activity	9.44E-04
22	GO:0004047: aminomethyltransferase activity	9.44E-04
23	GO:0052832: inositol monophosphate 3-phosphatase activity	9.44E-04
24	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	9.44E-04
25	GO:0004109: coproporphyrinogen oxidase activity	9.44E-04
26	GO:0004519: endonuclease activity	1.49E-03
27	GO:0005034: osmosensor activity	1.54E-03
28	GO:0003916: DNA topoisomerase activity	2.22E-03
29	GO:0080031: methyl salicylate esterase activity	2.22E-03
30	GO:0001872: (1->3)-beta-D-glucan binding	2.22E-03
31	GO:0005345: purine nucleobase transmembrane transporter activity	2.73E-03
32	GO:0004930: G-protein coupled receptor activity	2.99E-03
33	GO:0004845: uracil phosphoribosyltransferase activity	2.99E-03
34	GO:0010011: auxin binding	2.99E-03
35	GO:0004722: protein serine/threonine phosphatase activity	3.81E-03
36	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	3.83E-03
37	GO:0004523: RNA-DNA hybrid ribonuclease activity	3.83E-03
38	GO:0004556: alpha-amylase activity	4.74E-03
39	GO:0080030: methyl indole-3-acetate esterase activity	4.74E-03
40	GO:0004709: MAP kinase kinase kinase activity	4.74E-03
41	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.92E-03
42	GO:0016832: aldehyde-lyase activity	5.72E-03
43	GO:0004849: uridine kinase activity	5.72E-03
44	GO:0019900: kinase binding	5.72E-03
45	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	5.72E-03
46	GO:0004518: nuclease activity	6.50E-03
47	GO:0051015: actin filament binding	6.93E-03
48	GO:0003779: actin binding	7.28E-03
49	GO:0016759: cellulose synthase activity	7.38E-03
50	GO:0005200: structural constituent of cytoskeleton	7.84E-03
51	GO:0016413: O-acetyltransferase activity	8.32E-03
52	GO:0046914: transition metal ion binding	9.03E-03
53	GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity	9.03E-03
54	GO:0005525: GTP binding	1.04E-02
55	GO:0004222: metalloendopeptidase activity	1.27E-02
56	GO:0004673: protein histidine kinase activity	1.29E-02
57	GO:0004805: trehalose-phosphatase activity	1.29E-02
58	GO:0000049: tRNA binding	1.57E-02
59	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.60E-02
60	GO:0003725: double-stranded RNA binding	1.72E-02
61	GO:0000155: phosphorelay sensor kinase activity	1.72E-02
62	GO:0009982: pseudouridine synthase activity	1.72E-02
63	GO:0016301: kinase activity	1.79E-02
64	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.87E-02
65	GO:0005217: intracellular ligand-gated ion channel activity	2.03E-02
66	GO:0003712: transcription cofactor activity	2.03E-02
67	GO:0004970: ionotropic glutamate receptor activity	2.03E-02
68	GO:0004190: aspartic-type endopeptidase activity	2.03E-02
69	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.05E-02
70	GO:0031418: L-ascorbic acid binding	2.36E-02
71	GO:0043424: protein histidine kinase binding	2.54E-02
72	GO:0003690: double-stranded DNA binding	2.65E-02
73	GO:0016298: lipase activity	2.65E-02
74	GO:0016788: hydrolase activity, acting on ester bonds	2.70E-02
75	GO:0004707: MAP kinase activity	2.71E-02
76	GO:0008094: DNA-dependent ATPase activity	2.71E-02
77	GO:0008408: 3'-5' exonuclease activity	2.71E-02
78	GO:0010333: terpene synthase activity	2.71E-02
79	GO:0016760: cellulose synthase (UDP-forming) activity	3.08E-02
80	GO:0003727: single-stranded RNA binding	3.27E-02
81	GO:0004812: aminoacyl-tRNA ligase activity	3.46E-02
82	GO:0015035: protein disulfide oxidoreductase activity	3.74E-02
83	GO:0005199: structural constituent of cell wall	3.86E-02
84	GO:0052689: carboxylic ester hydrolase activity	3.90E-02
85	GO:0016762: xyloglucan:xyloglucosyl transferase activity	4.48E-02
86	GO:0019843: rRNA binding	4.54E-02
87	GO:0004871: signal transducer activity	4.55E-02
88	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.66E-02
89	GO:0000156: phosphorelay response regulator activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
4	GO:0000791: euchromatin	4.37E-04
5	GO:0009569: chloroplast starch grain	9.44E-04
6	GO:0009513: etioplast	9.44E-04
7	GO:0030870: Mre11 complex	9.44E-04
8	GO:0009509: chromoplast	1.54E-03
9	GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)	2.99E-03
10	GO:0015629: actin cytoskeleton	3.58E-03
11	GO:0000795: synaptonemal complex	3.83E-03
12	GO:0009501: amyloplast	7.86E-03
13	GO:0009707: chloroplast outer membrane	1.15E-02
14	GO:0005884: actin filament	1.43E-02
15	GO:0030095: chloroplast photosystem II	1.87E-02
16	GO:0005856: cytoskeleton	2.13E-02
17	GO:0046658: anchored component of plasma membrane	2.17E-02
18	GO:0005875: microtubule associated complex	2.20E-02
19	GO:0009507: chloroplast	2.20E-02
20	GO:0009654: photosystem II oxygen evolving complex	2.54E-02
21	GO:0009504: cell plate	4.27E-02
22	GO:0019898: extrinsic component of membrane	4.27E-02
23	GO:0000785: chromatin	4.69E-02