Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G29990

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0032260: response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance0.00E+00
2GO:0090359: negative regulation of abscisic acid biosynthetic process0.00E+00
3GO:0015690: aluminum cation transport0.00E+00
4GO:0009312: oligosaccharide biosynthetic process0.00E+00
5GO:1900367: positive regulation of defense response to insect0.00E+00
6GO:0002764: immune response-regulating signaling pathway0.00E+00
7GO:0032515: negative regulation of phosphoprotein phosphatase activity0.00E+00
8GO:0009992: cellular water homeostasis0.00E+00
9GO:0033587: shikimate biosynthetic process0.00E+00
10GO:0046865: terpenoid transport0.00E+00
11GO:0010324: membrane invagination0.00E+00
12GO:0032499: detection of peptidoglycan0.00E+00
13GO:0002752: cell surface pattern recognition receptor signaling pathway0.00E+00
14GO:0071327: cellular response to trehalose stimulus0.00E+00
15GO:0006468: protein phosphorylation1.69E-08
16GO:0006952: defense response3.49E-07
17GO:0010150: leaf senescence4.35E-07
18GO:0010200: response to chitin8.41E-07
19GO:0042742: defense response to bacterium1.17E-06
20GO:0060548: negative regulation of cell death1.92E-06
21GO:0009751: response to salicylic acid3.88E-06
22GO:0019725: cellular homeostasis1.21E-05
23GO:0031348: negative regulation of defense response4.11E-05
24GO:0071456: cellular response to hypoxia4.11E-05
25GO:0010112: regulation of systemic acquired resistance6.01E-05
26GO:0009862: systemic acquired resistance, salicylic acid mediated signaling pathway7.90E-05
27GO:0045227: capsule polysaccharide biosynthetic process1.51E-04
28GO:0033358: UDP-L-arabinose biosynthetic process1.51E-04
29GO:0080142: regulation of salicylic acid biosynthetic process1.51E-04
30GO:0009266: response to temperature stimulus2.22E-04
31GO:0009697: salicylic acid biosynthetic process2.30E-04
32GO:0009643: photosynthetic acclimation3.24E-04
33GO:0007166: cell surface receptor signaling pathway3.56E-04
34GO:0009626: plant-type hypersensitive response3.70E-04
35GO:2001022: positive regulation of response to DNA damage stimulus5.26E-04
36GO:0051938: L-glutamate import5.26E-04
37GO:0015760: glucose-6-phosphate transport5.26E-04
38GO:0046256: 2,4,6-trinitrotoluene catabolic process5.26E-04
39GO:0019567: arabinose biosynthetic process5.26E-04
40GO:1901183: positive regulation of camalexin biosynthetic process5.26E-04
41GO:0009270: response to humidity5.26E-04
42GO:0032491: detection of molecule of fungal origin5.26E-04
43GO:0042759: long-chain fatty acid biosynthetic process5.26E-04
44GO:1990067: intrachromosomal DNA recombination5.26E-04
45GO:0048508: embryonic meristem development5.26E-04
46GO:1900056: negative regulation of leaf senescence5.54E-04
47GO:0009867: jasmonic acid mediated signaling pathway5.72E-04
48GO:0009625: response to insect5.72E-04
49GO:0009787: regulation of abscisic acid-activated signaling pathway6.91E-04
50GO:2000031: regulation of salicylic acid mediated signaling pathway8.42E-04
51GO:0051707: response to other organism8.45E-04
52GO:0009646: response to absence of light9.39E-04
53GO:0006098: pentose-phosphate shunt1.01E-03
54GO:0010193: response to ozone1.12E-03
55GO:0015802: basic amino acid transport1.13E-03
56GO:0010618: aerenchyma formation1.13E-03
57GO:0080181: lateral root branching1.13E-03
58GO:0010115: regulation of abscisic acid biosynthetic process1.13E-03
59GO:0015865: purine nucleotide transport1.13E-03
60GO:0010271: regulation of chlorophyll catabolic process1.13E-03
61GO:0044419: interspecies interaction between organisms1.13E-03
62GO:0031349: positive regulation of defense response1.13E-03
63GO:0009945: radial axis specification1.13E-03
64GO:0015712: hexose phosphate transport1.13E-03
65GO:0051258: protein polymerization1.13E-03
66GO:0043091: L-arginine import1.13E-03
67GO:0015914: phospholipid transport1.13E-03
68GO:0006123: mitochondrial electron transport, cytochrome c to oxygen1.13E-03
69GO:0080151: positive regulation of salicylic acid mediated signaling pathway1.13E-03
70GO:0009838: abscission1.13E-03
71GO:1900426: positive regulation of defense response to bacterium1.18E-03
72GO:0006979: response to oxidative stress1.32E-03
73GO:0007165: signal transduction1.36E-03
74GO:0015692: lead ion transport1.85E-03
75GO:0015714: phosphoenolpyruvate transport1.85E-03
76GO:0015695: organic cation transport1.85E-03
77GO:0080168: abscisic acid transport1.85E-03
78GO:1900055: regulation of leaf senescence1.85E-03
79GO:0006954: inflammatory response1.85E-03
80GO:0010498: proteasomal protein catabolic process1.85E-03
81GO:0034051: negative regulation of plant-type hypersensitive response1.85E-03
82GO:0016045: detection of bacterium1.85E-03
83GO:1900140: regulation of seedling development1.85E-03
84GO:0010359: regulation of anion channel activity1.85E-03
85GO:0043328: protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway1.85E-03
86GO:0035436: triose phosphate transmembrane transport1.85E-03
87GO:0045793: positive regulation of cell size1.85E-03
88GO:0010186: positive regulation of cellular defense response1.85E-03
89GO:0009225: nucleotide-sugar metabolic process2.63E-03
90GO:0009311: oligosaccharide metabolic process2.69E-03
91GO:0010306: rhamnogalacturonan II biosynthetic process2.69E-03
92GO:0046902: regulation of mitochondrial membrane permeability2.69E-03
93GO:0009399: nitrogen fixation2.69E-03
94GO:0010731: protein glutathionylation2.69E-03
95GO:0072583: clathrin-dependent endocytosis2.69E-03
96GO:0015696: ammonium transport2.69E-03
97GO:0071323: cellular response to chitin2.69E-03
98GO:0051289: protein homotetramerization2.69E-03
99GO:0046513: ceramide biosynthetic process2.69E-03
100GO:0046836: glycolipid transport2.69E-03
101GO:0048194: Golgi vesicle budding2.69E-03
102GO:0009407: toxin catabolic process2.84E-03
103GO:0080147: root hair cell development3.26E-03
104GO:2000377: regulation of reactive oxygen species metabolic process3.26E-03
105GO:0009652: thigmotropism3.62E-03
106GO:0072488: ammonium transmembrane transport3.62E-03
107GO:0071219: cellular response to molecule of bacterial origin3.62E-03
108GO:0010508: positive regulation of autophagy3.62E-03
109GO:0015713: phosphoglycerate transport3.62E-03
110GO:0006542: glutamine biosynthetic process3.62E-03
111GO:1901141: regulation of lignin biosynthetic process3.62E-03
112GO:0010109: regulation of photosynthesis3.62E-03
113GO:0009737: response to abscisic acid3.67E-03
114GO:0050832: defense response to fungus3.85E-03
115GO:0016226: iron-sulfur cluster assembly4.34E-03
116GO:0046777: protein autophosphorylation4.36E-03
117GO:0018344: protein geranylgeranylation4.65E-03
118GO:0010225: response to UV-C4.65E-03
119GO:0034052: positive regulation of plant-type hypersensitive response4.65E-03
120GO:0006012: galactose metabolic process4.73E-03
121GO:0009636: response to toxic substance5.46E-03
122GO:0006855: drug transmembrane transport5.73E-03
123GO:1900425: negative regulation of defense response to bacterium5.76E-03
124GO:0010337: regulation of salicylic acid metabolic process5.76E-03
125GO:0006574: valine catabolic process5.76E-03
126GO:0018258: protein O-linked glycosylation via hydroxyproline5.76E-03
127GO:0002238: response to molecule of fungal origin5.76E-03
128GO:0009759: indole glucosinolate biosynthetic process5.76E-03
129GO:0010942: positive regulation of cell death5.76E-03
130GO:0010405: arabinogalactan protein metabolic process5.76E-03
131GO:0042391: regulation of membrane potential6.04E-03
132GO:0006470: protein dephosphorylation6.46E-03
133GO:0009617: response to bacterium6.90E-03
134GO:0010310: regulation of hydrogen peroxide metabolic process6.95E-03
135GO:0071470: cellular response to osmotic stress6.95E-03
136GO:0042372: phylloquinone biosynthetic process6.95E-03
137GO:0045926: negative regulation of growth6.95E-03
138GO:0009612: response to mechanical stimulus6.95E-03
139GO:0009942: longitudinal axis specification6.95E-03
140GO:0009423: chorismate biosynthetic process6.95E-03
141GO:0009749: response to glucose7.53E-03
142GO:0002229: defense response to oomycetes8.07E-03
143GO:0043090: amino acid import8.23E-03
144GO:0071446: cellular response to salicylic acid stimulus8.23E-03
145GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c8.23E-03
146GO:0050829: defense response to Gram-negative bacterium8.23E-03
147GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway8.23E-03
148GO:0007264: small GTPase mediated signal transduction8.62E-03
149GO:0010928: regulation of auxin mediated signaling pathway9.58E-03
150GO:0018401: peptidyl-proline hydroxylation to 4-hydroxy-L-proline9.58E-03
151GO:0009819: drought recovery9.58E-03
152GO:0009620: response to fungus9.64E-03
153GO:0006904: vesicle docking involved in exocytosis1.04E-02
154GO:0009624: response to nematode1.08E-02
155GO:0055085: transmembrane transport1.09E-02
156GO:0010099: regulation of photomorphogenesis1.10E-02
157GO:0010120: camalexin biosynthetic process1.10E-02
158GO:0010204: defense response signaling pathway, resistance gene-independent1.10E-02
159GO:0009788: negative regulation of abscisic acid-activated signaling pathway1.24E-02
160GO:0009816: defense response to bacterium, incompatible interaction1.24E-02
161GO:0009051: pentose-phosphate shunt, oxidative branch1.25E-02
162GO:0090333: regulation of stomatal closure1.25E-02
163GO:0046916: cellular transition metal ion homeostasis1.25E-02
164GO:0006950: response to stress1.38E-02
165GO:0043067: regulation of programmed cell death1.41E-02
166GO:0048268: clathrin coat assembly1.41E-02
167GO:0048354: mucilage biosynthetic process involved in seed coat development1.41E-02
168GO:0010380: regulation of chlorophyll biosynthetic process1.41E-02
169GO:0007064: mitotic sister chromatid cohesion1.57E-02
170GO:0009870: defense response signaling pathway, resistance gene-dependent1.57E-02
171GO:0006032: chitin catabolic process1.57E-02
172GO:0006259: DNA metabolic process1.57E-02
173GO:0006499: N-terminal protein myristoylation1.69E-02
174GO:0019684: photosynthesis, light reaction1.74E-02
175GO:0009089: lysine biosynthetic process via diaminopimelate1.74E-02
176GO:0009073: aromatic amino acid family biosynthetic process1.74E-02
177GO:0009684: indoleacetic acid biosynthetic process1.74E-02
178GO:0009790: embryo development1.76E-02
179GO:0010119: regulation of stomatal movement1.78E-02
180GO:0007568: aging1.78E-02
181GO:0008361: regulation of cell size1.92E-02
182GO:0012501: programmed cell death1.92E-02
183GO:0002213: defense response to insect1.92E-02
184GO:0010105: negative regulation of ethylene-activated signaling pathway1.92E-02
185GO:0045087: innate immune response1.95E-02
186GO:0006829: zinc II ion transport2.10E-02
187GO:0006006: glucose metabolic process2.10E-02
188GO:2000028: regulation of photoperiodism, flowering2.10E-02
189GO:0055046: microgametogenesis2.10E-02
190GO:0009611: response to wounding2.15E-02
191GO:0002237: response to molecule of bacterial origin2.29E-02
192GO:0007034: vacuolar transport2.29E-02
193GO:0006887: exocytosis2.32E-02
194GO:0006897: endocytosis2.32E-02
195GO:0046688: response to copper ion2.49E-02
196GO:0010167: response to nitrate2.49E-02
197GO:0046854: phosphatidylinositol phosphorylation2.49E-02
198GO:0009744: response to sucrose2.52E-02
199GO:0009408: response to heat2.54E-02
200GO:0009414: response to water deprivation2.55E-02
201GO:0000162: tryptophan biosynthetic process2.69E-02
202GO:0009753: response to jasmonic acid2.82E-02
203GO:0009944: polarity specification of adaxial/abaxial axis2.89E-02
204GO:0009863: salicylic acid mediated signaling pathway2.89E-02
205GO:0006487: protein N-linked glycosylation2.89E-02
206GO:0031347: regulation of defense response3.05E-02
207GO:0006825: copper ion transport3.10E-02
208GO:0006812: cation transport3.16E-02
209GO:0009269: response to desiccation3.32E-02
210GO:0003333: amino acid transmembrane transport3.32E-02
211GO:0016998: cell wall macromolecule catabolic process3.32E-02
212GO:0009809: lignin biosynthetic process3.39E-02
213GO:0006486: protein glycosylation3.39E-02
214GO:0010017: red or far-red light signaling pathway3.54E-02
215GO:2000022: regulation of jasmonic acid mediated signaling pathway3.54E-02
216GO:0042127: regulation of cell proliferation4.00E-02
217GO:0009561: megagametogenesis4.00E-02
218GO:0070417: cellular response to cold4.23E-02
219GO:0042631: cellular response to water deprivation4.47E-02
220GO:0000271: polysaccharide biosynthetic process4.47E-02
221GO:0009409: response to cold4.63E-02
222GO:0006885: regulation of pH4.72E-02
223GO:0045489: pectin biosynthetic process4.72E-02
224GO:0080167: response to karrikin4.87E-02
225GO:0048544: recognition of pollen4.97E-02
226GO:0007059: chromosome segregation4.97E-02
RankGO TermAdjusted P value
1GO:0008455: alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity0.00E+00
2GO:0004865: protein serine/threonine phosphatase inhibitor activity0.00E+00
3GO:0004107: chorismate synthase activity0.00E+00
4GO:2001080: chitosan binding0.00E+00
5GO:0005212: structural constituent of eye lens0.00E+00
6GO:0016639: oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor0.00E+00
7GO:0004674: protein serine/threonine kinase activity9.98E-10
8GO:0016301: kinase activity2.60E-09
9GO:0005524: ATP binding6.65E-05
10GO:0019199: transmembrane receptor protein kinase activity1.51E-04
11GO:0050373: UDP-arabinose 4-epimerase activity1.51E-04
12GO:0004675: transmembrane receptor protein serine/threonine kinase activity2.28E-04
13GO:0008375: acetylglucosaminyltransferase activity3.06E-04
14GO:0004012: phospholipid-translocating ATPase activity4.33E-04
15GO:0003978: UDP-glucose 4-epimerase activity4.33E-04
16GO:2001227: quercitrin binding5.26E-04
17GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity5.26E-04
18GO:0004662: CAAX-protein geranylgeranyltransferase activity5.26E-04
19GO:0019707: protein-cysteine S-acyltransferase activity5.26E-04
20GO:0010209: vacuolar sorting signal binding5.26E-04
21GO:2001147: camalexin binding5.26E-04
22GO:0010285: L,L-diaminopimelate aminotransferase activity5.26E-04
23GO:0032050: clathrin heavy chain binding5.26E-04
24GO:0043295: glutathione binding5.54E-04
25GO:0004714: transmembrane receptor protein tyrosine kinase activity6.91E-04
26GO:0019901: protein kinase binding1.03E-03
27GO:0015152: glucose-6-phosphate transmembrane transporter activity1.13E-03
28GO:0050403: trans-zeatin O-beta-D-glucosyltransferase activity1.13E-03
29GO:0050502: cis-zeatin O-beta-D-glucosyltransferase activity1.13E-03
30GO:0001671: ATPase activator activity1.13E-03
31GO:0048531: beta-1,3-galactosyltransferase activity1.13E-03
32GO:0050291: sphingosine N-acyltransferase activity1.13E-03
33GO:0047364: desulfoglucosinolate sulfotransferase activity1.13E-03
34GO:0004672: protein kinase activity1.31E-03
35GO:0004568: chitinase activity1.38E-03
36GO:0008559: xenobiotic-transporting ATPase activity1.60E-03
37GO:0005515: protein binding1.71E-03
38GO:0008442: 3-hydroxyisobutyrate dehydrogenase activity1.85E-03
39GO:0004324: ferredoxin-NADP+ reductase activity1.85E-03
40GO:0016531: copper chaperone activity1.85E-03
41GO:0032403: protein complex binding1.85E-03
42GO:0071917: triose-phosphate transmembrane transporter activity1.85E-03
43GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism2.08E-03
44GO:0030553: cGMP binding2.63E-03
45GO:0004190: aspartic-type endopeptidase activity2.63E-03
46GO:0030552: cAMP binding2.63E-03
47GO:0015189: L-lysine transmembrane transporter activity2.69E-03
48GO:0017089: glycolipid transporter activity2.69E-03
49GO:0015181: arginine transmembrane transporter activity2.69E-03
50GO:0003830: beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity2.69E-03
51GO:0005509: calcium ion binding3.04E-03
52GO:0043424: protein histidine kinase binding3.60E-03
53GO:0005216: ion channel activity3.60E-03
54GO:0004345: glucose-6-phosphate dehydrogenase activity3.62E-03
55GO:0051861: glycolipid binding3.62E-03
56GO:0005313: L-glutamate transmembrane transporter activity3.62E-03
57GO:0015120: phosphoglycerate transmembrane transporter activity3.62E-03
58GO:0004834: tryptophan synthase activity3.62E-03
59GO:0033612: receptor serine/threonine kinase binding3.96E-03
60GO:0019706: protein-cysteine S-palmitoyltransferase activity3.96E-03
61GO:0004364: glutathione transferase activity4.47E-03
62GO:0005496: steroid binding4.65E-03
63GO:0005471: ATP:ADP antiporter activity4.65E-03
64GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.65E-03
65GO:0004356: glutamate-ammonia ligase activity4.65E-03
66GO:0045431: flavonol synthase activity4.65E-03
67GO:1990714: hydroxyproline O-galactosyltransferase activity5.76E-03
68GO:0035252: UDP-xylosyltransferase activity5.76E-03
69GO:0008519: ammonium transmembrane transporter activity5.76E-03
70GO:0030551: cyclic nucleotide binding6.04E-03
71GO:0005249: voltage-gated potassium channel activity6.04E-03
72GO:0004616: phosphogluconate dehydrogenase (decarboxylating) activity6.95E-03
73GO:0005261: cation channel activity6.95E-03
74GO:0004656: procollagen-proline 4-dioxygenase activity6.95E-03
75GO:0043565: sequence-specific DNA binding8.44E-03
76GO:0005544: calcium-dependent phospholipid binding9.58E-03
77GO:0004033: aldo-keto reductase (NADP) activity9.58E-03
78GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity1.04E-02
79GO:0004430: 1-phosphatidylinositol 4-kinase activity1.10E-02
80GO:0005507: copper ion binding1.37E-02
81GO:0030247: polysaccharide binding1.38E-02
82GO:0016758: transferase activity, transferring hexosyl groups1.39E-02
83GO:0015174: basic amino acid transmembrane transporter activity1.41E-02
84GO:0047617: acyl-CoA hydrolase activity1.41E-02
85GO:0005545: 1-phosphatidylinositol binding1.57E-02
86GO:0015020: glucuronosyltransferase activity1.57E-02
87GO:0004713: protein tyrosine kinase activity1.57E-02
88GO:0008171: O-methyltransferase activity1.57E-02
89GO:0015238: drug transmembrane transporter activity1.61E-02
90GO:0005543: phospholipid binding1.74E-02
91GO:0008378: galactosyltransferase activity1.92E-02
92GO:0004842: ubiquitin-protein transferase activity2.00E-02
93GO:0015297: antiporter activity2.05E-02
94GO:0005315: inorganic phosphate transmembrane transporter activity2.10E-02
95GO:0004722: protein serine/threonine phosphatase activity2.14E-02
96GO:0008061: chitin binding2.49E-02
97GO:0008146: sulfotransferase activity2.49E-02
98GO:0009055: electron carrier activity2.82E-02
99GO:0016740: transferase activity2.89E-02
100GO:0031418: L-ascorbic acid binding2.89E-02
101GO:0042626: ATPase activity, coupled to transmembrane movement of substances2.93E-02
102GO:0008324: cation transmembrane transporter activity3.10E-02
103GO:0051087: chaperone binding3.10E-02
104GO:0004707: MAP kinase activity3.32E-02
105GO:0030246: carbohydrate binding3.40E-02
106GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.54E-02
107GO:0015171: amino acid transmembrane transporter activity3.75E-02
108GO:0031625: ubiquitin protein ligase binding3.75E-02
109GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups4.13E-02
110GO:0043531: ADP binding4.19E-02
111GO:0005451: monovalent cation:proton antiporter activity4.47E-02
112GO:0046873: metal ion transmembrane transporter activity4.72E-02
113GO:0030276: clathrin binding4.72E-02
114GO:0015299: solute:proton antiporter activity4.97E-02
115GO:0010181: FMN binding4.97E-02
RankGO TermAdjusted P value
1GO:0005886: plasma membrane8.41E-12
2GO:0016021: integral component of membrane5.76E-09
3GO:0005901: caveola1.21E-05
4GO:0000813: ESCRT I complex2.30E-04
5GO:0005758: mitochondrial intermembrane space3.50E-04
6GO:0005794: Golgi apparatus3.65E-04
7GO:0005953: CAAX-protein geranylgeranyltransferase complex5.26E-04
8GO:0000138: Golgi trans cisterna5.26E-04
9GO:0008287: protein serine/threonine phosphatase complex1.85E-03
10GO:0030139: endocytic vesicle1.85E-03
11GO:0070062: extracellular exosome2.69E-03
12GO:0000164: protein phosphatase type 1 complex4.65E-03
13GO:0000145: exocyst8.62E-03
14GO:0032580: Golgi cisterna membrane9.80E-03
15GO:0005774: vacuolar membrane1.35E-02
16GO:0030125: clathrin vesicle coat1.57E-02
17GO:0005740: mitochondrial envelope1.57E-02
18GO:0005802: trans-Golgi network1.71E-02
19GO:0005737: cytoplasm1.76E-02
20GO:0000325: plant-type vacuole1.78E-02
21GO:0000139: Golgi membrane1.92E-02
22GO:0009506: plasmodesma2.10E-02
23GO:0031902: late endosome membrane2.32E-02
24GO:0005795: Golgi stack2.49E-02
25GO:0005769: early endosome2.69E-02
26GO:0070469: respiratory chain3.10E-02
27GO:0005905: clathrin-coated pit3.32E-02
28GO:0030136: clathrin-coated vesicle4.23E-02
29GO:0012505: endomembrane system4.67E-02
30GO:0005770: late endosome4.72E-02
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Gene type



Gene DE type