co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0000489: maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
2	GO:0015882: L-ascorbic acid transport	0.00E+00
3	GO:0000455: enzyme-directed rRNA pseudouridine synthesis	0.00E+00
4	GO:0090279: regulation of calcium ion import	0.00E+00
5	GO:0000488: maturation of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)	0.00E+00
6	GO:0008298: intracellular mRNA localization	0.00E+00
7	GO:0071474: cellular hyperosmotic response	0.00E+00
8	GO:0043488: regulation of mRNA stability	0.00E+00
9	GO:0010239: chloroplast mRNA processing	1.23E-06
10	GO:0009658: chloroplast organization	4.22E-05
11	GO:0031426: polycistronic mRNA processing	4.60E-05
12	GO:0006637: acyl-CoA metabolic process	4.60E-05
13	GO:0046900: tetrahydrofolylpolyglutamate metabolic process	4.60E-05
14	GO:0070574: cadmium ion transmembrane transport	4.60E-05
15	GO:0010028: xanthophyll cycle	4.60E-05
16	GO:1902326: positive regulation of chlorophyll biosynthetic process	1.13E-04
17	GO:1900871: chloroplast mRNA modification	1.13E-04
18	GO:0000256: allantoin catabolic process	1.13E-04
19	GO:1904143: positive regulation of carotenoid biosynthetic process	1.13E-04
20	GO:0051262: protein tetramerization	1.13E-04
21	GO:0006954: inflammatory response	1.95E-04
22	GO:0010136: ureide catabolic process	1.95E-04
23	GO:0005977: glycogen metabolic process	1.95E-04
24	GO:0019252: starch biosynthetic process	2.68E-04
25	GO:0006145: purine nucleobase catabolic process	2.85E-04
26	GO:0051016: barbed-end actin filament capping	2.85E-04
27	GO:2000904: regulation of starch metabolic process	2.85E-04
28	GO:0090308: regulation of methylation-dependent chromatin silencing	2.85E-04
29	GO:0006021: inositol biosynthetic process	3.84E-04
30	GO:0010021: amylopectin biosynthetic process	3.84E-04
31	GO:0048442: sepal development	3.84E-04
32	GO:0080110: sporopollenin biosynthetic process	4.88E-04
33	GO:0046855: inositol phosphate dephosphorylation	5.98E-04
34	GO:1901259: chloroplast rRNA processing	7.13E-04
35	GO:0010076: maintenance of floral meristem identity	7.13E-04
36	GO:0071470: cellular response to osmotic stress	7.13E-04
37	GO:0051693: actin filament capping	8.33E-04
38	GO:0009787: regulation of abscisic acid-activated signaling pathway	9.57E-04
39	GO:0006875: cellular metal ion homeostasis	9.57E-04
40	GO:0032544: plastid translation	1.09E-03
41	GO:0048507: meristem development	1.22E-03
42	GO:0006857: oligopeptide transport	1.22E-03
43	GO:0098656: anion transmembrane transport	1.22E-03
44	GO:0048441: petal development	1.51E-03
45	GO:0006415: translational termination	1.66E-03
46	GO:0010216: maintenance of DNA methylation	1.66E-03
47	GO:0006790: sulfur compound metabolic process	1.81E-03
48	GO:0030036: actin cytoskeleton organization	1.98E-03
49	GO:0009718: anthocyanin-containing compound biosynthetic process	1.98E-03
50	GO:0006541: glutamine metabolic process	2.14E-03
51	GO:0007015: actin filament organization	2.14E-03
52	GO:0048440: carpel development	2.14E-03
53	GO:0019853: L-ascorbic acid biosynthetic process	2.31E-03
54	GO:0046854: phosphatidylinositol phosphorylation	2.31E-03
55	GO:0009451: RNA modification	2.80E-03
56	GO:0010584: pollen exine formation	3.63E-03
57	GO:0048443: stamen development	3.63E-03
58	GO:0071472: cellular response to salt stress	4.25E-03
59	GO:0009741: response to brassinosteroid	4.25E-03
60	GO:0009646: response to absence of light	4.47E-03
61	GO:0006970: response to osmotic stress	4.53E-03
62	GO:0009791: post-embryonic development	4.68E-03
63	GO:0055072: iron ion homeostasis	4.68E-03
64	GO:0032502: developmental process	5.13E-03
65	GO:0015995: chlorophyll biosynthetic process	7.08E-03
66	GO:0030001: metal ion transport	9.82E-03
67	GO:0051707: response to other organism	1.07E-02
68	GO:0000165: MAPK cascade	1.23E-02
69	GO:0009738: abscisic acid-activated signaling pathway	1.32E-02
70	GO:0009416: response to light stimulus	1.37E-02
71	GO:0016569: covalent chromatin modification	1.63E-02
72	GO:0009742: brassinosteroid mediated signaling pathway	1.77E-02
73	GO:0006508: proteolysis	2.21E-02
74	GO:0006413: translational initiation	2.38E-02
75	GO:0008380: RNA splicing	2.84E-02
76	GO:0010468: regulation of gene expression	2.84E-02
77	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	3.23E-02
78	GO:0009409: response to cold	3.75E-02
79	GO:0080167: response to karrikin	3.98E-02
80	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.08E-02

Rank	GO Term	Adjusted P value
1	GO:0019144: ADP-sugar diphosphatase activity	0.00E+00
2	GO:0015229: L-ascorbic acid transporter activity	0.00E+00
3	GO:0008242: omega peptidase activity	4.60E-05
4	GO:0010347: L-galactose-1-phosphate phosphatase activity	4.60E-05
5	GO:0005227: calcium activated cation channel activity	4.60E-05
6	GO:0080042: ADP-glucose pyrophosphohydrolase activity	4.60E-05
7	GO:0008934: inositol monophosphate 1-phosphatase activity	1.13E-04
8	GO:0052833: inositol monophosphate 4-phosphatase activity	1.13E-04
9	GO:0019156: isoamylase activity	1.13E-04
10	GO:0034722: gamma-glutamyl-peptidase activity	1.13E-04
11	GO:0080041: ADP-ribose pyrophosphohydrolase activity	1.13E-04
12	GO:0052832: inositol monophosphate 3-phosphatase activity	1.13E-04
13	GO:0004848: ureidoglycolate hydrolase activity	1.95E-04
14	GO:0015086: cadmium ion transmembrane transporter activity	2.85E-04
15	GO:0048027: mRNA 5'-UTR binding	2.85E-04
16	GO:0008237: metallopeptidase activity	3.70E-04
17	GO:0009011: starch synthase activity	3.84E-04
18	GO:0080032: methyl jasmonate esterase activity	3.84E-04
19	GO:0004222: metalloendopeptidase activity	5.92E-04
20	GO:0035673: oligopeptide transmembrane transporter activity	5.98E-04
21	GO:0004556: alpha-amylase activity	5.98E-04
22	GO:0008200: ion channel inhibitor activity	5.98E-04
23	GO:2001070: starch binding	5.98E-04
24	GO:0080030: methyl indole-3-acetate esterase activity	5.98E-04
25	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	7.13E-04
26	GO:0005261: cation channel activity	7.13E-04
27	GO:0003730: mRNA 3'-UTR binding	7.13E-04
28	GO:0008195: phosphatidate phosphatase activity	7.13E-04
29	GO:0015103: inorganic anion transmembrane transporter activity	8.33E-04
30	GO:0003747: translation release factor activity	1.22E-03
31	GO:0047617: acyl-CoA hydrolase activity	1.36E-03
32	GO:0015198: oligopeptide transporter activity	1.81E-03
33	GO:0005315: inorganic phosphate transmembrane transporter activity	1.98E-03
34	GO:0009982: pseudouridine synthase activity	1.98E-03
35	GO:0004176: ATP-dependent peptidase activity	3.04E-03
36	GO:0008514: organic anion transmembrane transporter activity	3.63E-03
37	GO:0046873: metal ion transmembrane transporter activity	4.25E-03
38	GO:0050662: coenzyme binding	4.47E-03
39	GO:0003723: RNA binding	6.24E-03
40	GO:0004519: endonuclease activity	8.35E-03
41	GO:0003993: acid phosphatase activity	9.25E-03
42	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.52E-02
43	GO:0003779: actin binding	1.66E-02
44	GO:0019843: rRNA binding	1.99E-02
45	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.18E-02
46	GO:0005525: GTP binding	2.25E-02
47	GO:0015144: carbohydrate transmembrane transporter activity	2.26E-02
48	GO:0005351: sugar:proton symporter activity	2.46E-02
49	GO:0003743: translation initiation factor activity	2.80E-02
50	GO:0003824: catalytic activity	3.04E-02
51	GO:0016788: hydrolase activity, acting on ester bonds	3.46E-02
52	GO:0061630: ubiquitin protein ligase activity	4.13E-02

Rank	GO Term	Adjusted P value
1	GO:0010368: chloroplast isoamylase complex	0.00E+00
2	GO:0009507: chloroplast	3.17E-07
3	GO:0043036: starch grain	1.13E-04
4	GO:0008290: F-actin capping protein complex	1.13E-04
5	GO:0009570: chloroplast stroma	3.01E-04
6	GO:0009501: amyloplast	9.57E-04
7	GO:0042644: chloroplast nucleoid	1.22E-03
8	GO:0005720: nuclear heterochromatin	1.22E-03
9	GO:0009706: chloroplast inner membrane	1.60E-03
10	GO:0048471: perinuclear region of cytoplasm	1.66E-03
11	GO:0009536: plastid	6.89E-03
12	GO:0043231: intracellular membrane-bounded organelle	8.47E-03
13	GO:0009941: chloroplast envelope	1.01E-02
14	GO:0005887: integral component of plasma membrane	1.04E-02
15	GO:0012505: endomembrane system	1.66E-02
16	GO:0009705: plant-type vacuole membrane	2.50E-02