co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29350

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0016139: glycoside catabolic process	0.00E+00
2	GO:1900409: positive regulation of cellular response to oxidative stress	0.00E+00
3	GO:2000117: negative regulation of cysteine-type endopeptidase activity	0.00E+00
4	GO:0042744: hydrogen peroxide catabolic process	1.53E-05
5	GO:1901430: positive regulation of syringal lignin biosynthetic process	5.03E-05
6	GO:0006144: purine nucleobase metabolic process	5.03E-05
7	GO:0019628: urate catabolic process	5.03E-05
8	GO:0015865: purine nucleotide transport	1.23E-04
9	GO:0043132: NAD transport	1.23E-04
10	GO:0006123: mitochondrial electron transport, cytochrome c to oxygen	1.23E-04
11	GO:0046939: nucleotide phosphorylation	1.23E-04
12	GO:0044375: regulation of peroxisome size	2.11E-04
13	GO:0055074: calcium ion homeostasis	2.11E-04
14	GO:0046902: regulation of mitochondrial membrane permeability	3.09E-04
15	GO:0015858: nucleoside transport	3.09E-04
16	GO:0010150: leaf senescence	3.35E-04
17	GO:1901657: glycosyl compound metabolic process	3.67E-04
18	GO:0009165: nucleotide biosynthetic process	4.15E-04
19	GO:0006542: glutamine biosynthetic process	4.15E-04
20	GO:0055114: oxidation-reduction process	4.74E-04
21	GO:0006090: pyruvate metabolic process	5.26E-04
22	GO:0046283: anthocyanin-containing compound metabolic process	5.26E-04
23	GO:0006564: L-serine biosynthetic process	5.26E-04
24	GO:0030308: negative regulation of cell growth	5.26E-04
25	GO:0006561: proline biosynthetic process	6.44E-04
26	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	6.44E-04
27	GO:0009228: thiamine biosynthetic process	6.44E-04
28	GO:0045926: negative regulation of growth	7.68E-04
29	GO:0052033: pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response	7.68E-04
30	GO:0006099: tricarboxylic acid cycle	7.89E-04
31	GO:0006839: mitochondrial transport	8.56E-04
32	GO:0006122: mitochondrial electron transport, ubiquinol to cytochrome c	8.97E-04
33	GO:1900056: negative regulation of leaf senescence	8.97E-04
34	GO:0006102: isocitrate metabolic process	1.03E-03
35	GO:0042742: defense response to bacterium	1.16E-03
36	GO:0010120: camalexin biosynthetic process	1.17E-03
37	GO:0010204: defense response signaling pathway, resistance gene-independent	1.17E-03
38	GO:0006979: response to oxidative stress	1.18E-03
39	GO:0009821: alkaloid biosynthetic process	1.32E-03
40	GO:0006032: chitin catabolic process	1.63E-03
41	GO:0043069: negative regulation of programmed cell death	1.63E-03
42	GO:0072593: reactive oxygen species metabolic process	1.79E-03
43	GO:0052544: defense response by callose deposition in cell wall	1.79E-03
44	GO:0006108: malate metabolic process	2.14E-03
45	GO:0009718: anthocyanin-containing compound biosynthetic process	2.14E-03
46	GO:0006807: nitrogen compound metabolic process	2.14E-03
47	GO:0009735: response to cytokinin	2.26E-03
48	GO:0046686: response to cadmium ion	2.27E-03
49	GO:0009058: biosynthetic process	2.36E-03
50	GO:0007031: peroxisome organization	2.50E-03
51	GO:0010167: response to nitrate	2.50E-03
52	GO:0000162: tryptophan biosynthetic process	2.69E-03
53	GO:0005992: trehalose biosynthetic process	2.88E-03
54	GO:0009116: nucleoside metabolic process	2.88E-03
55	GO:0006825: copper ion transport	3.08E-03
56	GO:0010089: xylem development	3.93E-03
57	GO:0010118: stomatal movement	4.37E-03
58	GO:0006662: glycerol ether metabolic process	4.60E-03
59	GO:0009851: auxin biosynthetic process	5.07E-03
60	GO:0010183: pollen tube guidance	5.07E-03
61	GO:0006635: fatty acid beta-oxidation	5.32E-03
62	GO:0071554: cell wall organization or biogenesis	5.32E-03
63	GO:0009723: response to ethylene	5.46E-03
64	GO:0009630: gravitropism	5.56E-03
65	GO:0009615: response to virus	6.85E-03
66	GO:0042128: nitrate assimilation	7.40E-03
67	GO:0009813: flavonoid biosynthetic process	8.53E-03
68	GO:0009407: toxin catabolic process	8.82E-03
69	GO:0010119: regulation of stomatal movement	9.12E-03
70	GO:0009753: response to jasmonic acid	9.26E-03
71	GO:0034599: cellular response to oxidative stress	1.00E-02
72	GO:0005975: carbohydrate metabolic process	1.05E-02
73	GO:0008283: cell proliferation	1.16E-02
74	GO:0009926: auxin polar transport	1.16E-02
75	GO:0009636: response to toxic substance	1.26E-02
76	GO:0006855: drug transmembrane transport	1.30E-02
77	GO:0031347: regulation of defense response	1.33E-02
78	GO:0009664: plant-type cell wall organization	1.37E-02
79	GO:0042538: hyperosmotic salinity response	1.37E-02
80	GO:0009809: lignin biosynthetic process	1.44E-02
81	GO:0009611: response to wounding	1.57E-02
82	GO:0006096: glycolytic process	1.62E-02
83	GO:0009626: plant-type hypersensitive response	1.69E-02
84	GO:0009620: response to fungus	1.73E-02
85	GO:0009624: response to nematode	1.84E-02
86	GO:0016310: phosphorylation	1.93E-02
87	GO:0055085: transmembrane transport	1.95E-02
88	GO:0050832: defense response to fungus	2.45E-02
89	GO:0009739: response to gibberellin	2.95E-02
90	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	2.95E-02
91	GO:0009826: unidimensional cell growth	3.61E-02
92	GO:0006810: transport	4.56E-02
93	GO:0045454: cell redox homeostasis	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0051765: inositol tetrakisphosphate kinase activity	0.00E+00
2	GO:0016508: long-chain-enoyl-CoA hydratase activity	0.00E+00
3	GO:0044610: FMN transmembrane transporter activity	0.00E+00
4	GO:0035885: exochitinase activity	0.00E+00
5	GO:0051766: inositol trisphosphate kinase activity	0.00E+00
6	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
7	GO:0008843: endochitinase activity	0.00E+00
8	GO:0004846: urate oxidase activity	0.00E+00
9	GO:0047326: inositol tetrakisphosphate 5-kinase activity	5.03E-05
10	GO:0000823: inositol-1,4,5-trisphosphate 6-kinase activity	5.03E-05
11	GO:0048037: cofactor binding	5.03E-05
12	GO:0015230: FAD transmembrane transporter activity	5.03E-05
13	GO:0016682: oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	5.03E-05
14	GO:0008440: inositol-1,4,5-trisphosphate 3-kinase activity	5.03E-05
15	GO:0004648: O-phospho-L-serine:2-oxoglutarate aminotransferase activity	5.03E-05
16	GO:0010013: N-1-naphthylphthalamic acid binding	5.03E-05
17	GO:0000824: inositol tetrakisphosphate 3-kinase activity	5.03E-05
18	GO:0033984: indole-3-glycerol-phosphate lyase activity	5.03E-05
19	GO:0008692: 3-hydroxybutyryl-CoA epimerase activity	5.03E-05
20	GO:0004601: peroxidase activity	5.28E-05
21	GO:0020037: heme binding	7.39E-05
22	GO:0005507: copper ion binding	9.76E-05
23	GO:0019172: glyoxalase III activity	1.23E-04
24	GO:0008517: folic acid transporter activity	1.23E-04
25	GO:0004776: succinate-CoA ligase (GDP-forming) activity	1.23E-04
26	GO:0004566: beta-glucuronidase activity	1.23E-04
27	GO:0015228: coenzyme A transmembrane transporter activity	1.23E-04
28	GO:0051724: NAD transporter activity	1.23E-04
29	GO:0003857: 3-hydroxyacyl-CoA dehydrogenase activity	1.23E-04
30	GO:0046593: mandelonitrile lyase activity	1.23E-04
31	GO:0004775: succinate-CoA ligase (ADP-forming) activity	1.23E-04
32	GO:0019829: cation-transporting ATPase activity	2.11E-04
33	GO:0004165: dodecenoyl-CoA delta-isomerase activity	3.09E-04
34	GO:0004300: enoyl-CoA hydratase activity	3.09E-04
35	GO:0052725: inositol-1,3,4-trisphosphate 6-kinase activity	3.09E-04
36	GO:0004749: ribose phosphate diphosphokinase activity	3.09E-04
37	GO:0019201: nucleotide kinase activity	3.09E-04
38	GO:0004449: isocitrate dehydrogenase (NAD+) activity	3.09E-04
39	GO:0004470: malic enzyme activity	4.15E-04
40	GO:0016652: oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor	4.15E-04
41	GO:0004834: tryptophan synthase activity	4.15E-04
42	GO:0004471: malate dehydrogenase (decarboxylating) (NAD+) activity	4.15E-04
43	GO:0005496: steroid binding	5.26E-04
44	GO:0005471: ATP:ADP antiporter activity	5.26E-04
45	GO:0004356: glutamate-ammonia ligase activity	5.26E-04
46	GO:0080122: AMP transmembrane transporter activity	5.26E-04
47	GO:0000287: magnesium ion binding	5.71E-04
48	GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity	6.44E-04
49	GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity	6.44E-04
50	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	7.56E-04
51	GO:0004017: adenylate kinase activity	7.68E-04
52	GO:0005347: ATP transmembrane transporter activity	7.68E-04
53	GO:0015217: ADP transmembrane transporter activity	7.68E-04
54	GO:0008422: beta-glucosidase activity	8.22E-04
55	GO:0004364: glutathione transferase activity	9.25E-04
56	GO:0051287: NAD binding	1.15E-03
57	GO:0005375: copper ion transmembrane transporter activity	1.17E-03
58	GO:0030955: potassium ion binding	1.47E-03
59	GO:0016844: strictosidine synthase activity	1.47E-03
60	GO:0004743: pyruvate kinase activity	1.47E-03
61	GO:0004177: aminopeptidase activity	1.79E-03
62	GO:0008559: xenobiotic-transporting ATPase activity	1.79E-03
63	GO:0015095: magnesium ion transmembrane transporter activity	2.14E-03
64	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.14E-03
65	GO:0008061: chitin binding	2.50E-03
66	GO:0005524: ATP binding	3.04E-03
67	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.59E-03
68	GO:0047134: protein-disulfide reductase activity	4.15E-03
69	GO:0005199: structural constituent of cell wall	4.60E-03
70	GO:0016788: hydrolase activity, acting on ester bonds	4.82E-03
71	GO:0004791: thioredoxin-disulfide reductase activity	4.83E-03
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	5.81E-03
73	GO:0046872: metal ion binding	6.25E-03
74	GO:0004702: signal transducer, downstream of receptor, with serine/threonine kinase activity	6.33E-03
75	GO:0052689: carboxylic ester hydrolase activity	6.46E-03
76	GO:0016413: O-acetyltransferase activity	6.59E-03
77	GO:0102483: scopolin beta-glucosidase activity	7.68E-03
78	GO:0050897: cobalt ion binding	9.12E-03
79	GO:0005198: structural molecule activity	1.26E-02
80	GO:0051082: unfolded protein binding	1.84E-02
81	GO:0015035: protein disulfide oxidoreductase activity	1.88E-02
82	GO:0030170: pyridoxal phosphate binding	2.33E-02
83	GO:0008565: protein transporter activity	2.46E-02
84	GO:0015297: antiporter activity	2.63E-02
85	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.23E-02

Rank	GO Term	Adjusted P value
1	GO:0009514: glyoxysome	2.48E-05
2	GO:0009530: primary cell wall	2.11E-04
3	GO:0046861: glyoxysomal membrane	2.11E-04
4	GO:0005773: vacuole	2.43E-04
5	GO:0005774: vacuolar membrane	4.34E-04
6	GO:0005618: cell wall	5.70E-04
7	GO:0005794: Golgi apparatus	1.15E-03
8	GO:0005779: integral component of peroxisomal membrane	1.17E-03
9	GO:0005765: lysosomal membrane	1.79E-03
10	GO:0005758: mitochondrial intermembrane space	2.88E-03
11	GO:0005777: peroxisome	3.01E-03
12	GO:0070469: respiratory chain	3.08E-03
13	GO:0005783: endoplasmic reticulum	6.33E-03
14	GO:0005778: peroxisomal membrane	6.33E-03
15	GO:0005788: endoplasmic reticulum lumen	7.12E-03
16	GO:0005743: mitochondrial inner membrane	8.03E-03
17	GO:0000325: plant-type vacuole	9.12E-03
18	GO:0009507: chloroplast	1.02E-02
19	GO:0005886: plasma membrane	1.08E-02
20	GO:0031977: thylakoid lumen	1.10E-02
21	GO:0090406: pollen tube	1.16E-02
22	GO:0000502: proteasome complex	1.44E-02
23	GO:0005576: extracellular region	1.55E-02
24	GO:0010008: endosome membrane	1.65E-02
25	GO:0005829: cytosol	1.87E-02
26	GO:0009506: plasmodesma	1.91E-02
27	GO:0010287: plastoglobule	2.08E-02
28	GO:0009505: plant-type cell wall	3.90E-02