co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G29070

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0001881: receptor recycling	0.00E+00
2	GO:0006592: ornithine biosynthetic process	0.00E+00
3	GO:0006511: ubiquitin-dependent protein catabolic process	2.25E-10
4	GO:0018279: protein N-linked glycosylation via asparagine	7.69E-06
5	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	1.18E-05
6	GO:0046686: response to cadmium ion	2.56E-05
7	GO:1901430: positive regulation of syringal lignin biosynthetic process	6.74E-05
8	GO:0006144: purine nucleobase metabolic process	6.74E-05
9	GO:0080120: CAAX-box protein maturation	6.74E-05
10	GO:0071586: CAAX-box protein processing	6.74E-05
11	GO:0019628: urate catabolic process	6.74E-05
12	GO:0010372: positive regulation of gibberellin biosynthetic process	1.62E-04
13	GO:0051788: response to misfolded protein	1.62E-04
14	GO:0045905: positive regulation of translational termination	1.62E-04
15	GO:0045901: positive regulation of translational elongation	1.62E-04
16	GO:0006452: translational frameshifting	1.62E-04
17	GO:0006695: cholesterol biosynthetic process	1.62E-04
18	GO:0000162: tryptophan biosynthetic process	1.68E-04
19	GO:0051603: proteolysis involved in cellular protein catabolic process	1.74E-04
20	GO:0030433: ubiquitin-dependent ERAD pathway	2.53E-04
21	GO:0008333: endosome to lysosome transport	2.75E-04
22	GO:0010359: regulation of anion channel activity	2.75E-04
23	GO:0009411: response to UV	2.77E-04
24	GO:0009647: skotomorphogenesis	3.98E-04
25	GO:0001676: long-chain fatty acid metabolic process	3.98E-04
26	GO:0010483: pollen tube reception	5.32E-04
27	GO:0010363: regulation of plant-type hypersensitive response	5.32E-04
28	GO:0016579: protein deubiquitination	6.35E-04
29	GO:0006564: L-serine biosynthetic process	6.73E-04
30	GO:0043248: proteasome assembly	8.23E-04
31	GO:0000054: ribosomal subunit export from nucleus	9.79E-04
32	GO:0010189: vitamin E biosynthetic process	9.79E-04
33	GO:0048528: post-embryonic root development	1.14E-03
34	GO:0006402: mRNA catabolic process	1.32E-03
35	GO:0031540: regulation of anthocyanin biosynthetic process	1.32E-03
36	GO:0001510: RNA methylation	1.50E-03
37	GO:0006526: arginine biosynthetic process	1.50E-03
38	GO:0015996: chlorophyll catabolic process	1.50E-03
39	GO:0006075: (1->3)-beta-D-glucan biosynthetic process	1.50E-03
40	GO:0045454: cell redox homeostasis	1.53E-03
41	GO:0009809: lignin biosynthetic process	1.85E-03
42	GO:0010072: primary shoot apical meristem specification	2.31E-03
43	GO:2000652: regulation of secondary cell wall biogenesis	2.31E-03
44	GO:0006820: anion transport	2.53E-03
45	GO:0006829: zinc II ion transport	2.76E-03
46	GO:0007034: vacuolar transport	2.99E-03
47	GO:0034605: cellular response to heat	2.99E-03
48	GO:0007031: peroxisome organization	3.23E-03
49	GO:0034976: response to endoplasmic reticulum stress	3.48E-03
50	GO:0006863: purine nucleobase transport	3.48E-03
51	GO:0006487: protein N-linked glycosylation	3.73E-03
52	GO:0006413: translational initiation	4.18E-03
53	GO:0040007: growth	4.81E-03
54	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	5.00E-03
55	GO:0009561: megagametogenesis	5.09E-03
56	GO:0009306: protein secretion	5.09E-03
57	GO:0010089: xylem development	5.09E-03
58	GO:0042147: retrograde transport, endosome to Golgi	5.38E-03
59	GO:0010051: xylem and phloem pattern formation	5.68E-03
60	GO:0006606: protein import into nucleus	5.68E-03
61	GO:0008360: regulation of cell shape	5.98E-03
62	GO:0048868: pollen tube development	5.98E-03
63	GO:0006623: protein targeting to vacuole	6.60E-03
64	GO:0048825: cotyledon development	6.60E-03
65	GO:0009826: unidimensional cell growth	6.65E-03
66	GO:0010193: response to ozone	6.91E-03
67	GO:0016132: brassinosteroid biosynthetic process	6.91E-03
68	GO:0031047: gene silencing by RNA	7.24E-03
69	GO:0030163: protein catabolic process	7.57E-03
70	GO:0009567: double fertilization forming a zygote and endosperm	7.90E-03
71	GO:0016126: sterol biosynthetic process	8.93E-03
72	GO:0006950: response to stress	1.00E-02
73	GO:0055114: oxidation-reduction process	1.05E-02
74	GO:0010311: lateral root formation	1.11E-02
75	GO:0006811: ion transport	1.15E-02
76	GO:0006499: N-terminal protein myristoylation	1.15E-02
77	GO:0010119: regulation of stomatal movement	1.19E-02
78	GO:0010043: response to zinc ion	1.19E-02
79	GO:0009867: jasmonic acid mediated signaling pathway	1.27E-02
80	GO:0009651: response to salt stress	1.31E-02
81	GO:0006397: mRNA processing	1.32E-02
82	GO:0006839: mitochondrial transport	1.39E-02
83	GO:0030001: metal ion transport	1.39E-02
84	GO:0006631: fatty acid metabolic process	1.44E-02
85	GO:0009664: plant-type cell wall organization	1.79E-02
86	GO:0009736: cytokinin-activated signaling pathway	1.88E-02
87	GO:0009735: response to cytokinin	2.06E-02
88	GO:0006096: glycolytic process	2.12E-02
89	GO:0009553: embryo sac development	2.37E-02
90	GO:0035556: intracellular signal transduction	2.38E-02
91	GO:0018105: peptidyl-serine phosphorylation	2.47E-02
92	GO:0006396: RNA processing	2.47E-02
93	GO:0055085: transmembrane transport	2.86E-02
94	GO:0042744: hydrogen peroxide catabolic process	3.11E-02
95	GO:0040008: regulation of growth	3.45E-02
96	GO:0007166: cell surface receptor signaling pathway	3.92E-02
97	GO:0009617: response to bacterium	4.04E-02
98	GO:0071555: cell wall organization	4.55E-02
99	GO:0006979: response to oxidative stress	4.58E-02

Rank	GO Term	Adjusted P value
1	GO:0009918: sterol delta7 reductase activity	0.00E+00
2	GO:0080124: pheophytinase activity	0.00E+00
3	GO:0004846: urate oxidase activity	0.00E+00
4	GO:0008777: acetylornithine deacetylase activity	0.00E+00
5	GO:0047598: 7-dehydrocholesterol reductase activity	0.00E+00
6	GO:0008418: protein-N-terminal asparagine amidohydrolase activity	0.00E+00
7	GO:0004298: threonine-type endopeptidase activity	4.75E-10
8	GO:0008233: peptidase activity	5.30E-07
9	GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity	7.69E-06
10	GO:0036402: proteasome-activating ATPase activity	1.18E-05
11	GO:0004048: anthranilate phosphoribosyltransferase activity	6.74E-05
12	GO:0015157: oligosaccharide transmembrane transporter activity	6.74E-05
13	GO:0017025: TBP-class protein binding	1.49E-04
14	GO:0004640: phosphoribosylanthranilate isomerase activity	1.62E-04
15	GO:0004617: phosphoglycerate dehydrogenase activity	1.62E-04
16	GO:0036459: thiol-dependent ubiquitinyl hydrolase activity	2.30E-04
17	GO:0004848: ureidoglycolate hydrolase activity	2.75E-04
18	GO:0004557: alpha-galactosidase activity	2.75E-04
19	GO:0052692: raffinose alpha-galactosidase activity	2.75E-04
20	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	3.98E-04
21	GO:0004601: peroxidase activity	9.40E-04
22	GO:0102391: decanoate--CoA ligase activity	9.79E-04
23	GO:0004602: glutathione peroxidase activity	9.79E-04
24	GO:0051920: peroxiredoxin activity	9.79E-04
25	GO:0004467: long-chain fatty acid-CoA ligase activity	1.14E-03
26	GO:0043022: ribosome binding	1.32E-03
27	GO:0015288: porin activity	1.32E-03
28	GO:0016209: antioxidant activity	1.32E-03
29	GO:0008173: RNA methyltransferase activity	1.50E-03
30	GO:0003843: 1,3-beta-D-glucan synthase activity	1.50E-03
31	GO:0008308: voltage-gated anion channel activity	1.50E-03
32	GO:0030955: potassium ion binding	1.89E-03
33	GO:0004743: pyruvate kinase activity	1.89E-03
34	GO:0016308: 1-phosphatidylinositol-4-phosphate 5-kinase activity	2.10E-03
35	GO:0008794: arsenate reductase (glutaredoxin) activity	2.31E-03
36	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	2.76E-03
37	GO:0015114: phosphate ion transmembrane transporter activity	2.76E-03
38	GO:0004175: endopeptidase activity	2.99E-03
39	GO:0005345: purine nucleobase transmembrane transporter activity	3.99E-03
40	GO:0003756: protein disulfide isomerase activity	5.09E-03
41	GO:0003743: translation initiation factor activity	5.22E-03
42	GO:0046873: metal ion transmembrane transporter activity	5.98E-03
43	GO:0016853: isomerase activity	6.28E-03
44	GO:0000287: magnesium ion binding	6.78E-03
45	GO:0004843: thiol-dependent ubiquitin-specific protease activity	6.91E-03
46	GO:0004518: nuclease activity	7.24E-03
47	GO:0004197: cysteine-type endopeptidase activity	7.24E-03
48	GO:0008237: metallopeptidase activity	8.24E-03
49	GO:0016597: amino acid binding	8.59E-03
50	GO:0009931: calcium-dependent protein serine/threonine kinase activity	9.65E-03
51	GO:0004683: calmodulin-dependent protein kinase activity	1.00E-02
52	GO:0004222: metalloendopeptidase activity	1.15E-02
53	GO:0003746: translation elongation factor activity	1.27E-02
54	GO:0003924: GTPase activity	1.27E-02
55	GO:0051287: NAD binding	1.74E-02
56	GO:0016887: ATPase activity	1.97E-02
57	GO:0015035: protein disulfide oxidoreductase activity	2.47E-02
58	GO:0008026: ATP-dependent helicase activity	2.52E-02
59	GO:0016787: hydrolase activity	2.64E-02
60	GO:0008565: protein transporter activity	3.22E-02
61	GO:0005516: calmodulin binding	3.39E-02
62	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.39E-02
63	GO:0005525: GTP binding	3.71E-02
64	GO:0005524: ATP binding	4.59E-02

Rank	GO Term	Adjusted P value
1	GO:0000502: proteasome complex	9.13E-13
2	GO:0005839: proteasome core complex	4.75E-10
3	GO:0005829: cytosol	3.39E-06
4	GO:0008250: oligosaccharyltransferase complex	7.69E-06
5	GO:0031597: cytosolic proteasome complex	1.69E-05
6	GO:0031595: nuclear proteasome complex	2.32E-05
7	GO:0005774: vacuolar membrane	4.01E-05
8	GO:0008540: proteasome regulatory particle, base subcomplex	5.97E-05
9	GO:0016442: RISC complex	6.74E-05
10	GO:0019774: proteasome core complex, beta-subunit complex	6.74E-05
11	GO:0005773: vacuole	1.45E-04
12	GO:0030176: integral component of endoplasmic reticulum membrane	1.49E-04
13	GO:0005838: proteasome regulatory particle	2.75E-04
14	GO:0046861: glyoxysomal membrane	2.75E-04
15	GO:0016020: membrane	4.01E-04
16	GO:0030117: membrane coat	5.32E-04
17	GO:0005771: multivesicular body	8.23E-04
18	GO:0030904: retromer complex	8.23E-04
19	GO:0005783: endoplasmic reticulum	1.10E-03
20	GO:0000148: 1,3-beta-D-glucan synthase complex	1.50E-03
21	GO:0046930: pore complex	1.50E-03
22	GO:0009514: glyoxysome	1.50E-03
23	GO:0019773: proteasome core complex, alpha-subunit complex	1.50E-03
24	GO:0010494: cytoplasmic stress granule	1.69E-03
25	GO:0030665: clathrin-coated vesicle membrane	1.89E-03
26	GO:0005635: nuclear envelope	1.97E-03
27	GO:0030125: clathrin vesicle coat	2.10E-03
28	GO:0008541: proteasome regulatory particle, lid subcomplex	2.31E-03
29	GO:0048471: perinuclear region of cytoplasm	2.31E-03
30	GO:0048046: apoplast	4.00E-03
31	GO:0005741: mitochondrial outer membrane	4.26E-03
32	GO:0005618: cell wall	4.65E-03
33	GO:0009504: cell plate	6.60E-03
34	GO:0005622: intracellular	8.53E-03
35	GO:0005794: Golgi apparatus	8.54E-03
36	GO:0000932: P-body	8.93E-03
37	GO:0009507: chloroplast	1.14E-02
38	GO:0009536: plastid	1.31E-02
39	GO:0031902: late endosome membrane	1.44E-02
40	GO:0009941: chloroplast envelope	2.16E-02
41	GO:0009706: chloroplast inner membrane	2.42E-02
42	GO:0005777: peroxisome	2.59E-02
43	GO:0005623: cell	2.89E-02
44	GO:0009506: plasmodesma	3.66E-02
45	GO:0005886: plasma membrane	3.99E-02
46	GO:0005737: cytoplasm	4.80E-02