co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28550

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0080127: fruit septum development	0.00E+00
2	GO:1900037: regulation of cellular response to hypoxia	0.00E+00
3	GO:0006907: pinocytosis	0.00E+00
4	GO:0045014: negative regulation of transcription by glucose	0.00E+00
5	GO:0009686: gibberellin biosynthetic process	3.65E-05
6	GO:0010070: zygote asymmetric cell division	1.37E-04
7	GO:0045786: negative regulation of cell cycle	1.37E-04
8	GO:0010726: positive regulation of hydrogen peroxide metabolic process	1.37E-04
9	GO:0061062: regulation of nematode larval development	3.16E-04
10	GO:0010069: zygote asymmetric cytokinesis in embryo sac	3.16E-04
11	GO:0006863: purine nucleobase transport	4.45E-04
12	GO:0006518: peptide metabolic process	5.20E-04
13	GO:0048575: short-day photoperiodism, flowering	5.20E-04
14	GO:0090506: axillary shoot meristem initiation	5.20E-04
15	GO:0007276: gamete generation	7.44E-04
16	GO:0009740: gibberellic acid mediated signaling pathway	8.50E-04
17	GO:0006021: inositol biosynthetic process	9.85E-04
18	GO:0048629: trichome patterning	9.85E-04
19	GO:0019760: glucosinolate metabolic process	1.41E-03
20	GO:0003006: developmental process involved in reproduction	1.53E-03
21	GO:0010942: positive regulation of cell death	1.53E-03
22	GO:0045736: negative regulation of cyclin-dependent protein serine/threonine kinase activity	1.53E-03
23	GO:0048573: photoperiodism, flowering	1.97E-03
24	GO:0009739: response to gibberellin	2.08E-03
25	GO:0009864: induced systemic resistance, jasmonic acid mediated signaling pathway	2.15E-03
26	GO:0007050: cell cycle arrest	2.15E-03
27	GO:0006811: ion transport	2.40E-03
28	GO:0006402: mRNA catabolic process	2.49E-03
29	GO:0009704: de-etiolation	2.49E-03
30	GO:0010492: maintenance of shoot apical meristem identity	2.49E-03
31	GO:0000105: histidine biosynthetic process	2.49E-03
32	GO:0042255: ribosome assembly	2.49E-03
33	GO:0006353: DNA-templated transcription, termination	2.49E-03
34	GO:0009733: response to auxin	2.82E-03
35	GO:0007186: G-protein coupled receptor signaling pathway	2.85E-03
36	GO:0006351: transcription, DNA-templated	2.90E-03
37	GO:0009416: response to light stimulus	3.11E-03
38	GO:0048589: developmental growth	3.22E-03
39	GO:0009056: catabolic process	3.22E-03
40	GO:0048507: meristem development	3.22E-03
41	GO:0042546: cell wall biogenesis	3.68E-03
42	GO:0048366: leaf development	3.86E-03
43	GO:0010629: negative regulation of gene expression	4.00E-03
44	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	4.30E-03
45	GO:0010152: pollen maturation	4.85E-03
46	GO:0006790: sulfur compound metabolic process	4.85E-03
47	GO:0010582: floral meristem determinacy	4.85E-03
48	GO:0016567: protein ubiquitination	5.07E-03
49	GO:0045892: negative regulation of transcription, DNA-templated	5.28E-03
50	GO:2000028: regulation of photoperiodism, flowering	5.30E-03
51	GO:0010102: lateral root morphogenesis	5.30E-03
52	GO:0010223: secondary shoot formation	5.76E-03
53	GO:0009887: animal organ morphogenesis	5.76E-03
54	GO:0006302: double-strand break repair	5.76E-03
55	GO:0048467: gynoecium development	5.76E-03
56	GO:0046854: phosphatidylinositol phosphorylation	6.23E-03
57	GO:0006874: cellular calcium ion homeostasis	7.73E-03
58	GO:0051321: meiotic cell cycle	8.26E-03
59	GO:0016114: terpenoid biosynthetic process	8.26E-03
60	GO:0071555: cell wall organization	9.08E-03
61	GO:0001944: vasculature development	9.35E-03
62	GO:0071215: cellular response to abscisic acid stimulus	9.35E-03
63	GO:0042127: regulation of cell proliferation	9.92E-03
64	GO:0048443: stamen development	9.92E-03
65	GO:0000271: polysaccharide biosynthetic process	1.11E-02
66	GO:0000413: protein peptidyl-prolyl isomerization	1.11E-02
67	GO:0009958: positive gravitropism	1.17E-02
68	GO:0045489: pectin biosynthetic process	1.17E-02
69	GO:0006355: regulation of transcription, DNA-templated	1.19E-02
70	GO:0007018: microtubule-based movement	1.23E-02
71	GO:0009908: flower development	1.23E-02
72	GO:0006470: protein dephosphorylation	1.34E-02
73	GO:0071554: cell wall organization or biogenesis	1.36E-02
74	GO:0002229: defense response to oomycetes	1.36E-02
75	GO:0009639: response to red or far red light	1.55E-02
76	GO:0009567: double fertilization forming a zygote and endosperm	1.55E-02
77	GO:0000910: cytokinesis	1.69E-02
78	GO:0016126: sterol biosynthetic process	1.76E-02
79	GO:0010411: xyloglucan metabolic process	1.98E-02
80	GO:0048527: lateral root development	2.36E-02
81	GO:0016051: carbohydrate biosynthetic process	2.51E-02
82	GO:0006839: mitochondrial transport	2.76E-02
83	GO:0010114: response to red light	3.01E-02
84	GO:0006468: protein phosphorylation	3.03E-02
85	GO:0048364: root development	3.47E-02
86	GO:0009664: plant-type cell wall organization	3.54E-02
87	GO:0048367: shoot system development	4.29E-02
88	GO:0009734: auxin-activated signaling pathway	4.66E-02
89	GO:0009624: response to nematode	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
2	GO:0009899: ent-kaurene synthase activity	0.00E+00
3	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
4	GO:0004401: histidinol-phosphatase activity	0.00E+00
5	GO:0010347: L-galactose-1-phosphate phosphatase activity	1.37E-04
6	GO:0017022: myosin binding	3.16E-04
7	GO:0010296: prenylcysteine methylesterase activity	3.16E-04
8	GO:0052832: inositol monophosphate 3-phosphatase activity	3.16E-04
9	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	3.16E-04
10	GO:0008805: carbon-monoxide oxygenase activity	3.16E-04
11	GO:0008934: inositol monophosphate 1-phosphatase activity	3.16E-04
12	GO:0052833: inositol monophosphate 4-phosphatase activity	3.16E-04
13	GO:0016707: gibberellin 3-beta-dioxygenase activity	5.20E-04
14	GO:0005345: purine nucleobase transmembrane transporter activity	5.43E-04
15	GO:0045544: gibberellin 20-oxidase activity	7.44E-04
16	GO:0010011: auxin binding	9.85E-04
17	GO:0004930: G-protein coupled receptor activity	9.85E-04
18	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.25E-03
19	GO:0030332: cyclin binding	1.53E-03
20	GO:0004861: cyclin-dependent protein serine/threonine kinase inhibitor activity	1.53E-03
21	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.83E-03
22	GO:0004871: signal transducer activity	5.49E-03
23	GO:0003700: transcription factor activity, sequence-specific DNA binding	5.67E-03
24	GO:0004722: protein serine/threonine phosphatase activity	5.82E-03
25	GO:0004970: ionotropic glutamate receptor activity	6.23E-03
26	GO:0005217: intracellular ligand-gated ion channel activity	6.23E-03
27	GO:0008134: transcription factor binding	7.22E-03
28	GO:0033612: receptor serine/threonine kinase binding	8.26E-03
29	GO:0008408: 3'-5' exonuclease activity	8.26E-03
30	GO:0010333: terpene synthase activity	8.26E-03
31	GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity	8.79E-03
32	GO:0003727: single-stranded RNA binding	9.92E-03
33	GO:0005199: structural constituent of cell wall	1.17E-02
34	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.36E-02
35	GO:0043565: sequence-specific DNA binding	1.39E-02
36	GO:0046983: protein dimerization activity	1.41E-02
37	GO:0016759: cellulose synthase activity	1.55E-02
38	GO:0016413: O-acetyltransferase activity	1.69E-02
39	GO:0000287: magnesium ion binding	1.78E-02
40	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.98E-02
41	GO:0008236: serine-type peptidase activity	2.05E-02
42	GO:0005096: GTPase activator activity	2.20E-02
43	GO:0004222: metalloendopeptidase activity	2.28E-02
44	GO:0030145: manganese ion binding	2.36E-02
45	GO:0043621: protein self-association	3.19E-02
46	GO:0003924: GTPase activity	3.32E-02
47	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	3.36E-02
48	GO:0004674: protein serine/threonine kinase activity	3.58E-02
49	GO:0003690: double-stranded DNA binding	3.82E-02
50	GO:0003777: microtubule motor activity	4.00E-02
51	GO:0008026: ATP-dependent helicase activity	4.98E-02

Rank	GO Term	Adjusted P value
1	GO:0043224: nuclear SCF ubiquitin ligase complex	0.00E+00
2	GO:0000791: euchromatin	1.37E-04
3	GO:0030870: Mre11 complex	3.16E-04
4	GO:0009531: secondary cell wall	7.44E-04
5	GO:0000795: synaptonemal complex	1.25E-03
6	GO:0005875: microtubule associated complex	6.71E-03
7	GO:0009532: plastid stroma	8.26E-03
8	GO:0005871: kinesin complex	1.05E-02
9	GO:0009504: cell plate	1.29E-02
10	GO:0000785: chromatin	1.42E-02
11	GO:0030529: intracellular ribonucleoprotein complex	1.76E-02
12	GO:0005874: microtubule	2.18E-02
13	GO:0090406: pollen tube	3.01E-02
14	GO:0010008: endosome membrane	4.29E-02
15	GO:0005886: plasma membrane	4.39E-02
16	GO:0000139: Golgi membrane	4.92E-02