co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28470

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0033494: ferulate metabolic process	0.00E+00
2	GO:0005996: monosaccharide metabolic process	0.00E+00
3	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
4	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
5	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
6	GO:0009773: photosynthetic electron transport in photosystem I	8.85E-11
7	GO:0015979: photosynthesis	2.69E-08
8	GO:0015995: chlorophyll biosynthetic process	4.52E-06
9	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	3.30E-05
10	GO:0010207: photosystem II assembly	6.71E-05
11	GO:0009768: photosynthesis, light harvesting in photosystem I	1.29E-04
12	GO:1901259: chloroplast rRNA processing	1.85E-04
13	GO:0009854: oxidative photosynthetic carbon pathway	1.85E-04
14	GO:0010114: response to red light	2.29E-04
15	GO:0000476: maturation of 4.5S rRNA	3.02E-04
16	GO:0000967: rRNA 5'-end processing	3.02E-04
17	GO:0046467: membrane lipid biosynthetic process	3.02E-04
18	GO:0015671: oxygen transport	3.02E-04
19	GO:0071277: cellular response to calcium ion	3.02E-04
20	GO:0019544: arginine catabolic process to glutamate	3.02E-04
21	GO:0042371: vitamin K biosynthetic process	3.02E-04
22	GO:0071461: cellular response to redox state	3.02E-04
23	GO:0080093: regulation of photorespiration	3.02E-04
24	GO:0031998: regulation of fatty acid beta-oxidation	3.02E-04
25	GO:0034337: RNA folding	3.02E-04
26	GO:0009657: plastid organization	3.75E-04
27	GO:0032544: plastid translation	3.75E-04
28	GO:0071482: cellular response to light stimulus	3.75E-04
29	GO:0006098: pentose-phosphate shunt	4.52E-04
30	GO:0005982: starch metabolic process	5.34E-04
31	GO:0080005: photosystem stoichiometry adjustment	6.60E-04
32	GO:0010541: acropetal auxin transport	6.60E-04
33	GO:0060151: peroxisome localization	6.60E-04
34	GO:0071457: cellular response to ozone	6.60E-04
35	GO:0034470: ncRNA processing	6.60E-04
36	GO:0051645: Golgi localization	6.60E-04
37	GO:0055114: oxidation-reduction process	6.71E-04
38	GO:0030048: actin filament-based movement	9.29E-04
39	GO:0006094: gluconeogenesis	9.29E-04
40	GO:0010218: response to far red light	9.97E-04
41	GO:0010143: cutin biosynthetic process	1.04E-03
42	GO:0090391: granum assembly	1.07E-03
43	GO:0051646: mitochondrion localization	1.07E-03
44	GO:0010160: formation of animal organ boundary	1.07E-03
45	GO:0090436: leaf pavement cell development	1.07E-03
46	GO:0005977: glycogen metabolic process	1.07E-03
47	GO:0009637: response to blue light	1.18E-03
48	GO:0009853: photorespiration	1.18E-03
49	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.53E-03
50	GO:0010731: protein glutathionylation	1.53E-03
51	GO:2001141: regulation of RNA biosynthetic process	1.53E-03
52	GO:0006020: inositol metabolic process	1.53E-03
53	GO:0071484: cellular response to light intensity	1.53E-03
54	GO:0009152: purine ribonucleotide biosynthetic process	1.53E-03
55	GO:0046653: tetrahydrofolate metabolic process	1.53E-03
56	GO:0043481: anthocyanin accumulation in tissues in response to UV light	1.53E-03
57	GO:0019748: secondary metabolic process	1.90E-03
58	GO:2000122: negative regulation of stomatal complex development	2.06E-03
59	GO:0006546: glycine catabolic process	2.06E-03
60	GO:0006021: inositol biosynthetic process	2.06E-03
61	GO:0010021: amylopectin biosynthetic process	2.06E-03
62	GO:0010037: response to carbon dioxide	2.06E-03
63	GO:0015976: carbon utilization	2.06E-03
64	GO:0071486: cellular response to high light intensity	2.06E-03
65	GO:0015689: molybdate ion transport	2.06E-03
66	GO:0009765: photosynthesis, light harvesting	2.06E-03
67	GO:0045727: positive regulation of translation	2.06E-03
68	GO:0015994: chlorophyll metabolic process	2.06E-03
69	GO:0071493: cellular response to UV-B	2.63E-03
70	GO:0006564: L-serine biosynthetic process	2.63E-03
71	GO:0006097: glyoxylate cycle	2.63E-03
72	GO:0006465: signal peptide processing	2.63E-03
73	GO:0042631: cellular response to water deprivation	2.64E-03
74	GO:0006096: glycolytic process	2.95E-03
75	GO:0060918: auxin transport	3.24E-03
76	GO:1902456: regulation of stomatal opening	3.24E-03
77	GO:0010190: cytochrome b6f complex assembly	3.24E-03
78	GO:0009228: thiamine biosynthetic process	3.24E-03
79	GO:0046855: inositol phosphate dephosphorylation	3.24E-03
80	GO:0050665: hydrogen peroxide biosynthetic process	3.24E-03
81	GO:0042549: photosystem II stabilization	3.24E-03
82	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.24E-03
83	GO:0019252: starch biosynthetic process	3.27E-03
84	GO:0006810: transport	3.77E-03
85	GO:0010189: vitamin E biosynthetic process	3.90E-03
86	GO:0071333: cellular response to glucose stimulus	3.90E-03
87	GO:0009955: adaxial/abaxial pattern specification	3.90E-03
88	GO:0005975: carbohydrate metabolic process	4.05E-03
89	GO:0009735: response to cytokinin	4.13E-03
90	GO:0009769: photosynthesis, light harvesting in photosystem II	4.60E-03
91	GO:0009645: response to low light intensity stimulus	4.60E-03
92	GO:0009395: phospholipid catabolic process	4.60E-03
93	GO:0009772: photosynthetic electron transport in photosystem II	4.60E-03
94	GO:1900056: negative regulation of leaf senescence	4.60E-03
95	GO:0009642: response to light intensity	5.35E-03
96	GO:0070413: trehalose metabolism in response to stress	5.35E-03
97	GO:0009704: de-etiolation	5.35E-03
98	GO:0052543: callose deposition in cell wall	5.35E-03
99	GO:0016559: peroxisome fission	5.35E-03
100	GO:0019430: removal of superoxide radicals	6.13E-03
101	GO:0010204: defense response signaling pathway, resistance gene-independent	6.13E-03
102	GO:0018298: protein-chromophore linkage	6.61E-03
103	GO:0009821: alkaloid biosynthetic process	6.95E-03
104	GO:0019432: triglyceride biosynthetic process	6.95E-03
105	GO:0090333: regulation of stomatal closure	6.95E-03
106	GO:0006783: heme biosynthetic process	6.95E-03
107	GO:0010380: regulation of chlorophyll biosynthetic process	7.80E-03
108	GO:0006779: porphyrin-containing compound biosynthetic process	7.80E-03
109	GO:0006782: protoporphyrinogen IX biosynthetic process	8.70E-03
110	GO:0009641: shade avoidance	8.70E-03
111	GO:0034599: cellular response to oxidative stress	8.77E-03
112	GO:0043085: positive regulation of catalytic activity	9.63E-03
113	GO:0006352: DNA-templated transcription, initiation	9.63E-03
114	GO:0000272: polysaccharide catabolic process	9.63E-03
115	GO:0018119: peptidyl-cysteine S-nitrosylation	9.63E-03
116	GO:0016024: CDP-diacylglycerol biosynthetic process	1.06E-02
117	GO:0008361: regulation of cell size	1.06E-02
118	GO:0006790: sulfur compound metabolic process	1.06E-02
119	GO:0006108: malate metabolic process	1.16E-02
120	GO:0006006: glucose metabolic process	1.16E-02
121	GO:0009767: photosynthetic electron transport chain	1.16E-02
122	GO:0010020: chloroplast fission	1.26E-02
123	GO:0019253: reductive pentose-phosphate cycle	1.26E-02
124	GO:0010223: secondary shoot formation	1.26E-02
125	GO:0010540: basipetal auxin transport	1.26E-02
126	GO:0048467: gynoecium development	1.26E-02
127	GO:0046854: phosphatidylinositol phosphorylation	1.37E-02
128	GO:0006364: rRNA processing	1.46E-02
129	GO:0010025: wax biosynthetic process	1.48E-02
130	GO:0006636: unsaturated fatty acid biosynthetic process	1.48E-02
131	GO:0009833: plant-type primary cell wall biogenesis	1.48E-02
132	GO:0019762: glucosinolate catabolic process	1.48E-02
133	GO:0051603: proteolysis involved in cellular protein catabolic process	1.52E-02
134	GO:0005992: trehalose biosynthetic process	1.59E-02
135	GO:0007017: microtubule-based process	1.71E-02
136	GO:0080167: response to karrikin	1.72E-02
137	GO:0009416: response to light stimulus	1.72E-02
138	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.79E-02
139	GO:0016114: terpenoid biosynthetic process	1.82E-02
140	GO:0019915: lipid storage	1.82E-02
141	GO:0009269: response to desiccation	1.82E-02
142	GO:0016226: iron-sulfur cluster assembly	1.95E-02
143	GO:0030433: ubiquitin-dependent ERAD pathway	1.95E-02
144	GO:0030245: cellulose catabolic process	1.95E-02
145	GO:0071215: cellular response to abscisic acid stimulus	2.07E-02
146	GO:0009306: protein secretion	2.20E-02
147	GO:0048443: stamen development	2.20E-02
148	GO:0016117: carotenoid biosynthetic process	2.33E-02
149	GO:0042335: cuticle development	2.46E-02
150	GO:0010118: stomatal movement	2.46E-02
151	GO:0009958: positive gravitropism	2.59E-02
152	GO:0006520: cellular amino acid metabolic process	2.59E-02
153	GO:0071472: cellular response to salt stress	2.59E-02
154	GO:0010154: fruit development	2.59E-02
155	GO:0006662: glycerol ether metabolic process	2.59E-02
156	GO:0015986: ATP synthesis coupled proton transport	2.73E-02
157	GO:0009409: response to cold	2.75E-02
158	GO:0009058: biosynthetic process	2.76E-02
159	GO:0009791: post-embryonic development	2.87E-02
160	GO:0010193: response to ozone	3.01E-02
161	GO:0032502: developmental process	3.16E-02
162	GO:0009630: gravitropism	3.16E-02
163	GO:0010090: trichome morphogenesis	3.31E-02
164	GO:1901657: glycosyl compound metabolic process	3.31E-02
165	GO:0009639: response to red or far red light	3.46E-02
166	GO:0046686: response to cadmium ion	3.47E-02
167	GO:0007623: circadian rhythm	3.61E-02
168	GO:0042128: nitrate assimilation	4.24E-02
169	GO:0016049: cell growth	4.56E-02
170	GO:0016311: dephosphorylation	4.56E-02
171	GO:0009817: defense response to fungus, incompatible interaction	4.73E-02
172	GO:0030244: cellulose biosynthetic process	4.73E-02
173	GO:0009813: flavonoid biosynthetic process	4.90E-02

Rank	GO Term	Adjusted P value
1	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
2	GO:0045550: geranylgeranyl reductase activity	0.00E+00
3	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
4	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
5	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0008465: glycerate dehydrogenase activity	0.00E+00
7	GO:0008935: 1,4-dihydroxy-2-naphthoyl-CoA synthase activity	0.00E+00
8	GO:0008942: nitrite reductase [NAD(P)H] activity	0.00E+00
9	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
10	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
11	GO:0016851: magnesium chelatase activity	3.30E-05
12	GO:0009011: starch synthase activity	5.93E-05
13	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	5.93E-05
14	GO:0031409: pigment binding	9.50E-05
15	GO:0004332: fructose-bisphosphate aldolase activity	1.36E-04
16	GO:0004185: serine-type carboxypeptidase activity	2.29E-04
17	GO:0009374: biotin binding	3.02E-04
18	GO:0005344: oxygen transporter activity	3.02E-04
19	GO:0035671: enone reductase activity	3.02E-04
20	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.02E-04
21	GO:0042802: identical protein binding	4.28E-04
22	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.60E-04
23	GO:0008934: inositol monophosphate 1-phosphatase activity	6.60E-04
24	GO:0052833: inositol monophosphate 4-phosphatase activity	6.60E-04
25	GO:0019156: isoamylase activity	6.60E-04
26	GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity	6.60E-04
27	GO:0008883: glutamyl-tRNA reductase activity	6.60E-04
28	GO:0047746: chlorophyllase activity	6.60E-04
29	GO:0010297: heteropolysaccharide binding	6.60E-04
30	GO:0004617: phosphoglycerate dehydrogenase activity	6.60E-04
31	GO:0004047: aminomethyltransferase activity	6.60E-04
32	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	6.60E-04
33	GO:0052832: inositol monophosphate 3-phosphatase activity	6.60E-04
34	GO:0033201: alpha-1,4-glucan synthase activity	6.60E-04
35	GO:0018708: thiol S-methyltransferase activity	6.60E-04
36	GO:0016168: chlorophyll binding	6.78E-04
37	GO:0003774: motor activity	1.04E-03
38	GO:0050734: hydroxycinnamoyltransferase activity	1.07E-03
39	GO:0004751: ribose-5-phosphate isomerase activity	1.07E-03
40	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.07E-03
41	GO:0008864: formyltetrahydrofolate deformylase activity	1.07E-03
42	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.07E-03
43	GO:0004373: glycogen (starch) synthase activity	1.07E-03
44	GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	1.53E-03
45	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	1.53E-03
46	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	1.53E-03
47	GO:0001872: (1->3)-beta-D-glucan binding	1.53E-03
48	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	1.53E-03
49	GO:0045430: chalcone isomerase activity	2.06E-03
50	GO:0015098: molybdate ion transmembrane transporter activity	2.06E-03
51	GO:0008891: glycolate oxidase activity	2.06E-03
52	GO:0001053: plastid sigma factor activity	2.06E-03
53	GO:0008453: alanine-glyoxylate transaminase activity	2.06E-03
54	GO:0016987: sigma factor activity	2.06E-03
55	GO:0051287: NAD binding	2.08E-03
56	GO:0003989: acetyl-CoA carboxylase activity	2.63E-03
57	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.24E-03
58	GO:0004556: alpha-amylase activity	3.24E-03
59	GO:0004784: superoxide dismutase activity	3.24E-03
60	GO:0016615: malate dehydrogenase activity	3.24E-03
61	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.24E-03
62	GO:2001070: starch binding	3.24E-03
63	GO:0048038: quinone binding	3.50E-03
64	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.90E-03
65	GO:0030060: L-malate dehydrogenase activity	3.90E-03
66	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.90E-03
67	GO:0016791: phosphatase activity	4.25E-03
68	GO:0019843: rRNA binding	4.97E-03
69	GO:0016844: strictosidine synthase activity	7.80E-03
70	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.80E-03
71	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	7.85E-03
72	GO:0008047: enzyme activator activity	8.70E-03
73	GO:0003993: acid phosphatase activity	8.77E-03
74	GO:0050661: NADP binding	9.56E-03
75	GO:0047372: acylglycerol lipase activity	9.63E-03
76	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	1.02E-02
77	GO:0004565: beta-galactosidase activity	1.16E-02
78	GO:0010329: auxin efflux transmembrane transporter activity	1.16E-02
79	GO:0004022: alcohol dehydrogenase (NAD) activity	1.16E-02
80	GO:0004089: carbonate dehydratase activity	1.16E-02
81	GO:0051537: 2 iron, 2 sulfur cluster binding	1.17E-02
82	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.26E-02
83	GO:0008266: poly(U) RNA binding	1.26E-02
84	GO:0016788: hydrolase activity, acting on ester bonds	1.34E-02
85	GO:0051536: iron-sulfur cluster binding	1.59E-02
86	GO:0005528: FK506 binding	1.59E-02
87	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.79E-02
88	GO:0008810: cellulase activity	2.07E-02
89	GO:0016760: cellulose synthase (UDP-forming) activity	2.07E-02
90	GO:0003727: single-stranded RNA binding	2.20E-02
91	GO:0047134: protein-disulfide reductase activity	2.33E-02
92	GO:0046933: proton-transporting ATP synthase activity, rotational mechanism	2.59E-02
93	GO:0016491: oxidoreductase activity	2.62E-02
94	GO:0050662: coenzyme binding	2.73E-02
95	GO:0010181: FMN binding	2.73E-02
96	GO:0004791: thioredoxin-disulfide reductase activity	2.73E-02
97	GO:0016853: isomerase activity	2.73E-02
98	GO:0009055: electron carrier activity	3.06E-02
99	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	3.31E-02
100	GO:0016759: cellulose synthase activity	3.46E-02
101	GO:0005525: GTP binding	3.57E-02
102	GO:0005200: structural constituent of cytoskeleton	3.61E-02
103	GO:0008483: transaminase activity	3.61E-02
104	GO:0016597: amino acid binding	3.76E-02
105	GO:0008270: zinc ion binding	3.78E-02
106	GO:0003743: translation initiation factor activity	4.21E-02
107	GO:0030247: polysaccharide binding	4.40E-02
108	GO:0102483: scopolin beta-glucosidase activity	4.40E-02
109	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	4.56E-02
110	GO:0016887: ATPase activity	4.81E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0009507: chloroplast	2.68E-36
3	GO:0009534: chloroplast thylakoid	1.87E-17
4	GO:0009535: chloroplast thylakoid membrane	2.16E-17
5	GO:0009570: chloroplast stroma	5.34E-15
6	GO:0009941: chloroplast envelope	8.68E-15
7	GO:0009579: thylakoid	2.42E-10
8	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.09E-09
9	GO:0009543: chloroplast thylakoid lumen	5.70E-08
10	GO:0010287: plastoglobule	8.62E-07
11	GO:0010007: magnesium chelatase complex	1.48E-05
12	GO:0031977: thylakoid lumen	1.66E-05
13	GO:0030076: light-harvesting complex	8.03E-05
14	GO:0005787: signal peptidase complex	3.02E-04
15	GO:0009344: nitrite reductase complex [NAD(P)H]	3.02E-04
16	GO:0009522: photosystem I	3.28E-04
17	GO:0005777: peroxisome	4.66E-04
18	GO:0010319: stromule	5.46E-04
19	GO:0048046: apoplast	5.77E-04
20	GO:0016459: myosin complex	6.23E-04
21	GO:0043036: starch grain	6.60E-04
22	GO:0000427: plastid-encoded plastid RNA polymerase complex	6.60E-04
23	GO:0031969: chloroplast membrane	8.92E-04
24	GO:0030095: chloroplast photosystem II	1.04E-03
25	GO:0033281: TAT protein transport complex	1.07E-03
26	GO:0009317: acetyl-CoA carboxylase complex	1.07E-03
27	GO:0009654: photosystem II oxygen evolving complex	1.58E-03
28	GO:0009517: PSII associated light-harvesting complex II	2.06E-03
29	GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)	3.24E-03
30	GO:0009523: photosystem II	3.27E-03
31	GO:0019898: extrinsic component of membrane	3.27E-03
32	GO:0009501: amyloplast	5.35E-03
33	GO:0045298: tubulin complex	6.95E-03
34	GO:0005763: mitochondrial small ribosomal subunit	6.95E-03
35	GO:0005773: vacuole	1.06E-02
36	GO:0032040: small-subunit processome	1.06E-02
37	GO:0043234: protein complex	1.48E-02
38	GO:0042651: thylakoid membrane	1.71E-02
39	GO:0005840: ribosome	1.78E-02
40	GO:0015935: small ribosomal subunit	1.82E-02
41	GO:0005623: cell	2.69E-02
42	GO:0009707: chloroplast outer membrane	4.73E-02