co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0031930: mitochondria-nucleus signaling pathway	4.63E-05
2	GO:0015969: guanosine tetraphosphate metabolic process	1.25E-04
3	GO:0051180: vitamin transport	1.25E-04
4	GO:0030974: thiamine pyrophosphate transport	1.25E-04
5	GO:0046939: nucleotide phosphorylation	2.90E-04
6	GO:0080185: effector dependent induction by symbiont of host immune response	2.90E-04
7	GO:1902066: regulation of cell wall pectin metabolic process	2.90E-04
8	GO:0031349: positive regulation of defense response	2.90E-04
9	GO:0015893: drug transport	2.90E-04
10	GO:0045732: positive regulation of protein catabolic process	2.90E-04
11	GO:0043066: negative regulation of apoptotic process	2.90E-04
12	GO:0005976: polysaccharide metabolic process	2.90E-04
13	GO:0019725: cellular homeostasis	2.90E-04
14	GO:0009266: response to temperature stimulus	3.14E-04
15	GO:0007034: vacuolar transport	3.14E-04
16	GO:2001009: regulation of plant-type cell wall cellulose biosynthetic process	4.78E-04
17	GO:1901672: positive regulation of systemic acquired resistance	4.78E-04
18	GO:0048586: regulation of long-day photoperiodism, flowering	4.78E-04
19	GO:0032922: circadian regulation of gene expression	4.78E-04
20	GO:0061158: 3'-UTR-mediated mRNA destabilization	4.78E-04
21	GO:0009737: response to abscisic acid	5.35E-04
22	GO:2000022: regulation of jasmonic acid mediated signaling pathway	5.76E-04
23	GO:0010104: regulation of ethylene-activated signaling pathway	6.85E-04
24	GO:0045227: capsule polysaccharide biosynthetic process	9.08E-04
25	GO:0033358: UDP-L-arabinose biosynthetic process	9.08E-04
26	GO:0018344: protein geranylgeranylation	1.15E-03
27	GO:0009247: glycolipid biosynthetic process	1.15E-03
28	GO:0006904: vesicle docking involved in exocytosis	1.32E-03
29	GO:0045491: xylan metabolic process	1.41E-03
30	GO:0010337: regulation of salicylic acid metabolic process	1.41E-03
31	GO:1900057: positive regulation of leaf senescence	1.98E-03
32	GO:0009787: regulation of abscisic acid-activated signaling pathway	2.29E-03
33	GO:0030162: regulation of proteolysis	2.29E-03
34	GO:0019375: galactolipid biosynthetic process	2.29E-03
35	GO:0045010: actin nucleation	2.29E-03
36	GO:0009738: abscisic acid-activated signaling pathway	2.44E-03
37	GO:0009808: lignin metabolic process	2.61E-03
38	GO:0010208: pollen wall assembly	2.61E-03
39	GO:0009932: cell tip growth	2.61E-03
40	GO:0009056: catabolic process	2.95E-03
41	GO:0010112: regulation of systemic acquired resistance	2.95E-03
42	GO:1900426: positive regulation of defense response to bacterium	3.31E-03
43	GO:0030042: actin filament depolymerization	3.31E-03
44	GO:0048268: clathrin coat assembly	3.31E-03
45	GO:0046777: protein autophosphorylation	3.82E-03
46	GO:0015706: nitrate transport	4.45E-03
47	GO:0016925: protein sumoylation	4.45E-03
48	GO:0046854: phosphatidylinositol phosphorylation	5.71E-03
49	GO:0009225: nucleotide-sugar metabolic process	5.71E-03
50	GO:0010167: response to nitrate	5.71E-03
51	GO:0009408: response to heat	5.75E-03
52	GO:0018105: peptidyl-serine phosphorylation	6.13E-03
53	GO:0009863: salicylic acid mediated signaling pathway	6.61E-03
54	GO:0045333: cellular respiration	6.61E-03
55	GO:0009414: response to water deprivation	7.23E-03
56	GO:0042742: defense response to bacterium	7.49E-03
57	GO:0003333: amino acid transmembrane transport	7.56E-03
58	GO:0031348: negative regulation of defense response	8.05E-03
59	GO:0006012: galactose metabolic process	8.56E-03
60	GO:0045492: xylan biosynthetic process	9.07E-03
61	GO:0006284: base-excision repair	9.07E-03
62	GO:0009306: protein secretion	9.07E-03
63	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	9.60E-03
64	GO:0006885: regulation of pH	1.07E-02
65	GO:0015031: protein transport	1.08E-02
66	GO:0009611: response to wounding	1.23E-02
67	GO:0006952: defense response	1.27E-02
68	GO:0051607: defense response to virus	1.54E-02
69	GO:0016579: protein deubiquitination	1.54E-02
70	GO:0009615: response to virus	1.61E-02
71	GO:0009788: negative regulation of abscisic acid-activated signaling pathway	1.67E-02
72	GO:0009816: defense response to bacterium, incompatible interaction	1.67E-02
73	GO:0009627: systemic acquired resistance	1.74E-02
74	GO:0042128: nitrate assimilation	1.74E-02
75	GO:0009817: defense response to fungus, incompatible interaction	1.94E-02
76	GO:0010200: response to chitin	2.05E-02
77	GO:0010043: response to zinc ion	2.15E-02
78	GO:0009631: cold acclimation	2.15E-02
79	GO:0006865: amino acid transport	2.23E-02
80	GO:0009867: jasmonic acid mediated signaling pathway	2.30E-02
81	GO:0006468: protein phosphorylation	2.39E-02
82	GO:0045892: negative regulation of transcription, DNA-templated	2.42E-02
83	GO:0006839: mitochondrial transport	2.52E-02
84	GO:0006887: exocytosis	2.60E-02
85	GO:0006897: endocytosis	2.60E-02
86	GO:0051707: response to other organism	2.75E-02
87	GO:0009751: response to salicylic acid	2.89E-02
88	GO:0006855: drug transmembrane transport	3.07E-02
89	GO:0031347: regulation of defense response	3.15E-02
90	GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process	3.15E-02
91	GO:0042538: hyperosmotic salinity response	3.24E-02
92	GO:0006812: cation transport	3.24E-02
93	GO:0006486: protein glycosylation	3.40E-02
94	GO:0009585: red, far-red light phototransduction	3.40E-02
95	GO:0006813: potassium ion transport	3.40E-02
96	GO:0010224: response to UV-B	3.49E-02
97	GO:0006351: transcription, DNA-templated	3.56E-02
98	GO:0009409: response to cold	4.22E-02
99	GO:0009624: response to nematode	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0052821: DNA-7-methyladenine glycosylase activity	0.00E+00
2	GO:0003905: alkylbase DNA N-glycosylase activity	0.00E+00
3	GO:0010290: chlorophyll catabolite transmembrane transporter activity	0.00E+00
4	GO:0005522: profilin binding	0.00E+00
5	GO:0015431: glutathione S-conjugate-exporting ATPase activity	0.00E+00
6	GO:0052822: DNA-3-methylguanine glycosylase activity	0.00E+00
7	GO:0043916: DNA-7-methylguanine glycosylase activity	0.00E+00
8	GO:1901149: salicylic acid binding	1.25E-04
9	GO:0090422: thiamine pyrophosphate transporter activity	1.25E-04
10	GO:0004662: CAAX-protein geranylgeranyltransferase activity	1.25E-04
11	GO:0046481: digalactosyldiacylglycerol synthase activity	1.25E-04
12	GO:0008559: xenobiotic-transporting ATPase activity	2.10E-04
13	GO:0030775: glucuronoxylan 4-O-methyltransferase activity	2.90E-04
14	GO:0008728: GTP diphosphokinase activity	2.90E-04
15	GO:0042626: ATPase activity, coupled to transmembrane movement of substances	3.17E-04
16	GO:0005524: ATP binding	3.50E-04
17	GO:0019948: SUMO activating enzyme activity	4.78E-04
18	GO:0019201: nucleotide kinase activity	6.85E-04
19	GO:0035250: UDP-galactosyltransferase activity	6.85E-04
20	GO:0050373: UDP-arabinose 4-epimerase activity	9.08E-04
21	GO:0009916: alternative oxidase activity	9.08E-04
22	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	1.15E-03
23	GO:0008725: DNA-3-methyladenine glycosylase activity	1.15E-03
24	GO:0008375: acetylglucosaminyltransferase activity	1.65E-03
25	GO:0009931: calcium-dependent protein serine/threonine kinase activity	1.65E-03
26	GO:0003978: UDP-glucose 4-epimerase activity	1.68E-03
27	GO:0004017: adenylate kinase activity	1.68E-03
28	GO:0003730: mRNA 3'-UTR binding	1.68E-03
29	GO:0004683: calmodulin-dependent protein kinase activity	1.74E-03
30	GO:0004430: 1-phosphatidylinositol 4-kinase activity	2.61E-03
31	GO:0015112: nitrate transmembrane transporter activity	3.31E-03
32	GO:0005545: 1-phosphatidylinositol binding	3.68E-03
33	GO:0005543: phospholipid binding	4.06E-03
34	GO:0008378: galactosyltransferase activity	4.45E-03
35	GO:0031072: heat shock protein binding	4.86E-03
36	GO:0015662: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	4.86E-03
37	GO:0003779: actin binding	5.78E-03
38	GO:0005509: calcium ion binding	6.63E-03
39	GO:0051087: chaperone binding	7.08E-03
40	GO:0005515: protein binding	1.01E-02
41	GO:0005451: monovalent cation:proton antiporter activity	1.01E-02
42	GO:0030276: clathrin binding	1.07E-02
43	GO:0015299: solute:proton antiporter activity	1.12E-02
44	GO:0004843: thiol-dependent ubiquitin-specific protease activity	1.24E-02
45	GO:0051015: actin filament binding	1.36E-02
46	GO:0015385: sodium:proton antiporter activity	1.36E-02
47	GO:0016301: kinase activity	1.90E-02
48	GO:0005516: calmodulin binding	2.00E-02
49	GO:0015238: drug transmembrane transporter activity	2.01E-02
50	GO:0005525: GTP binding	2.24E-02
51	GO:0003924: GTPase activity	2.93E-02
52	GO:0005215: transporter activity	3.29E-02
53	GO:0015171: amino acid transmembrane transporter activity	3.66E-02
54	GO:0031625: ubiquitin protein ligase binding	3.66E-02
55	GO:0016874: ligase activity	4.19E-02
56	GO:0004842: ubiquitin-protein transferase activity	4.32E-02
57	GO:0051082: unfolded protein binding	4.37E-02
58	GO:0016757: transferase activity, transferring glycosyl groups	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0005911: cell-cell junction	1.25E-04
2	GO:0005953: CAAX-protein geranylgeranyltransferase complex	1.25E-04
3	GO:0005901: caveola	2.90E-04
4	GO:0030139: endocytic vesicle	4.78E-04
5	GO:0000815: ESCRT III complex	1.68E-03
6	GO:0000325: plant-type vacuole	2.22E-03
7	GO:0090404: pollen tube tip	4.06E-03
8	GO:0070469: respiratory chain	7.08E-03
9	GO:0005654: nucleoplasm	7.26E-03
10	GO:0005905: clathrin-coated pit	7.56E-03
11	GO:0015629: actin cytoskeleton	8.56E-03
12	GO:0005886: plasma membrane	8.58E-03
13	GO:0030136: clathrin-coated vesicle	9.60E-03
14	GO:0005770: late endosome	1.07E-02
15	GO:0000145: exocyst	1.30E-02
16	GO:0032580: Golgi cisterna membrane	1.42E-02
17	GO:0019005: SCF ubiquitin ligase complex	1.94E-02
18	GO:0009707: chloroplast outer membrane	1.94E-02
19	GO:0031902: late endosome membrane	2.60E-02
20	GO:0005743: mitochondrial inner membrane	2.73E-02
21	GO:0090406: pollen tube	2.75E-02
22	GO:0005856: cytoskeleton	2.99E-02
23	GO:0005635: nuclear envelope	3.57E-02
24	GO:0005834: heterotrimeric G-protein complex	4.01E-02
25	GO:0005829: cytosol	4.04E-02
26	GO:0005774: vacuolar membrane	4.73E-02
27	GO:0005794: Golgi apparatus	4.96E-02