Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G28150

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0000372: Group I intron splicing0.00E+00
2GO:0043972: histone H3-K23 acetylation0.00E+00
3GO:0080127: fruit septum development0.00E+00
4GO:0032212: positive regulation of telomere maintenance via telomerase0.00E+00
5GO:1905255: regulation of RNA binding transcription factor activity0.00E+00
6GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
7GO:0002949: tRNA threonylcarbamoyladenosine modification0.00E+00
8GO:0032206: positive regulation of telomere maintenance0.00E+00
9GO:0046486: glycerolipid metabolic process0.00E+00
10GO:0006907: pinocytosis0.00E+00
11GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
12GO:0070125: mitochondrial translational elongation0.00E+00
13GO:0044154: histone H3-K14 acetylation0.00E+00
14GO:0010081: regulation of inflorescence meristem growth0.00E+00
15GO:0045176: apical protein localization0.00E+00
16GO:0000373: Group II intron splicing7.62E-06
17GO:0009926: auxin polar transport9.17E-05
18GO:0046620: regulation of organ growth1.00E-04
19GO:0009451: RNA modification3.34E-04
20GO:0010582: floral meristem determinacy4.28E-04
21GO:0010583: response to cyclopentenone5.16E-04
22GO:0072684: mitochondrial tRNA 3'-trailer cleavage, endonucleolytic8.61E-04
23GO:0009090: homoserine biosynthetic process8.61E-04
24GO:0043489: RNA stabilization8.61E-04
25GO:0043971: histone H3-K18 acetylation8.61E-04
26GO:0043266: regulation of potassium ion transport8.61E-04
27GO:0010080: regulation of floral meristem growth8.61E-04
28GO:1902025: nitrate import8.61E-04
29GO:0019478: D-amino acid catabolic process8.61E-04
30GO:0043686: co-translational protein modification8.61E-04
31GO:0043087: regulation of GTPase activity8.61E-04
32GO:2000021: regulation of ion homeostasis8.61E-04
33GO:0043609: regulation of carbon utilization8.61E-04
34GO:0006436: tryptophanyl-tRNA aminoacylation8.61E-04
35GO:0090548: response to nitrate starvation8.61E-04
36GO:0000066: mitochondrial ornithine transport8.61E-04
37GO:0034757: negative regulation of iron ion transport8.61E-04
38GO:0005992: trehalose biosynthetic process9.10E-04
39GO:0048255: mRNA stabilization1.87E-03
40GO:0010271: regulation of chlorophyll catabolic process1.87E-03
41GO:0006432: phenylalanyl-tRNA aminoacylation1.87E-03
42GO:0006650: glycerophospholipid metabolic process1.87E-03
43GO:0001736: establishment of planar polarity1.87E-03
44GO:0080009: mRNA methylation1.87E-03
45GO:0009786: regulation of asymmetric cell division1.87E-03
46GO:0006420: arginyl-tRNA aminoacylation1.87E-03
47GO:0043039: tRNA aminoacylation1.87E-03
48GO:0009958: positive gravitropism2.21E-03
49GO:0007018: microtubule-based movement2.42E-03
50GO:0048829: root cap development2.91E-03
51GO:0006000: fructose metabolic process3.10E-03
52GO:0046168: glycerol-3-phosphate catabolic process3.10E-03
53GO:0010022: meristem determinacy3.10E-03
54GO:0042780: tRNA 3'-end processing3.10E-03
55GO:0045493: xylan catabolic process3.10E-03
56GO:0030029: actin filament-based process3.10E-03
57GO:0034414: tRNA 3'-trailer cleavage, endonucleolytic3.10E-03
58GO:0045910: negative regulation of DNA recombination3.10E-03
59GO:0031022: nuclear migration along microfilament3.10E-03
60GO:0080117: secondary growth3.10E-03
61GO:0009793: embryo development ending in seed dormancy3.57E-03
62GO:0040008: regulation of growth4.28E-03
63GO:0006072: glycerol-3-phosphate metabolic process4.52E-03
64GO:2000904: regulation of starch metabolic process4.52E-03
65GO:1990019: protein storage vacuole organization4.52E-03
66GO:0045017: glycerolipid biosynthetic process4.52E-03
67GO:0009067: aspartate family amino acid biosynthetic process4.52E-03
68GO:0010371: regulation of gibberellin biosynthetic process4.52E-03
69GO:0051513: regulation of monopolar cell growth4.52E-03
70GO:0009102: biotin biosynthetic process4.52E-03
71GO:0051639: actin filament network formation4.52E-03
72GO:0034059: response to anoxia4.52E-03
73GO:0010239: chloroplast mRNA processing4.52E-03
74GO:0009800: cinnamic acid biosynthetic process4.52E-03
75GO:0044211: CTP salvage4.52E-03
76GO:0010540: basipetal auxin transport4.98E-03
77GO:0010411: xyloglucan metabolic process5.76E-03
78GO:0006021: inositol biosynthetic process6.11E-03
79GO:0008295: spermidine biosynthetic process6.11E-03
80GO:0044206: UMP salvage6.11E-03
81GO:0009956: radial pattern formation6.11E-03
82GO:0009755: hormone-mediated signaling pathway6.11E-03
83GO:0051764: actin crosslink formation6.11E-03
84GO:0009734: auxin-activated signaling pathway6.92E-03
85GO:0051017: actin filament bundle assembly6.94E-03
86GO:0006418: tRNA aminoacylation for protein translation7.68E-03
87GO:0009696: salicylic acid metabolic process7.87E-03
88GO:0009904: chloroplast accumulation movement7.87E-03
89GO:0031365: N-terminal protein amino acid modification7.87E-03
90GO:0009107: lipoate biosynthetic process7.87E-03
91GO:0016123: xanthophyll biosynthetic process7.87E-03
92GO:0010438: cellular response to sulfur starvation7.87E-03
93GO:0010158: abaxial cell fate specification7.87E-03
94GO:0080110: sporopollenin biosynthetic process7.87E-03
95GO:0071555: cell wall organization9.11E-03
96GO:0016554: cytidine to uridine editing9.80E-03
97GO:0042793: transcription from plastid promoter9.80E-03
98GO:0048831: regulation of shoot system development9.80E-03
99GO:0003006: developmental process involved in reproduction9.80E-03
100GO:0009920: cell plate formation involved in plant-type cell wall biogenesis9.80E-03
101GO:0006559: L-phenylalanine catabolic process9.80E-03
102GO:0006206: pyrimidine nucleobase metabolic process9.80E-03
103GO:0048827: phyllome development9.80E-03
104GO:0009942: longitudinal axis specification1.19E-02
105GO:0048509: regulation of meristem development1.19E-02
106GO:0009903: chloroplast avoidance movement1.19E-02
107GO:0031930: mitochondria-nucleus signaling pathway1.19E-02
108GO:0009088: threonine biosynthetic process1.19E-02
109GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity1.19E-02
110GO:0009648: photoperiodism1.19E-02
111GO:0042546: cell wall biogenesis1.30E-02
112GO:0045489: pectin biosynthetic process1.40E-02
113GO:0010098: suspensor development1.41E-02
114GO:0010050: vegetative phase change1.41E-02
115GO:0010444: guard mother cell differentiation1.41E-02
116GO:0000082: G1/S transition of mitotic cell cycle1.41E-02
117GO:0015693: magnesium ion transport1.41E-02
118GO:0009610: response to symbiotic fungus1.41E-02
119GO:0006955: immune response1.41E-02
120GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway1.54E-02
121GO:0009850: auxin metabolic process1.64E-02
122GO:0009819: drought recovery1.64E-02
123GO:2000070: regulation of response to water deprivation1.64E-02
124GO:0006353: DNA-templated transcription, termination1.64E-02
125GO:0070413: trehalose metabolism in response to stress1.64E-02
126GO:0000105: histidine biosynthetic process1.64E-02
127GO:0048564: photosystem I assembly1.64E-02
128GO:0010439: regulation of glucosinolate biosynthetic process1.64E-02
129GO:0007186: G-protein coupled receptor signaling pathway1.89E-02
130GO:0009657: plastid organization1.89E-02
131GO:0032544: plastid translation1.89E-02
132GO:0007389: pattern specification process1.89E-02
133GO:0044030: regulation of DNA methylation1.89E-02
134GO:0006002: fructose 6-phosphate metabolic process1.89E-02
135GO:0071482: cellular response to light stimulus1.89E-02
136GO:0019430: removal of superoxide radicals1.89E-02
137GO:0009827: plant-type cell wall modification1.89E-02
138GO:0007166: cell surface receptor signaling pathway2.04E-02
139GO:0009639: response to red or far red light2.11E-02
140GO:0006098: pentose-phosphate shunt2.15E-02
141GO:0046916: cellular transition metal ion homeostasis2.15E-02
142GO:0048507: meristem development2.15E-02
143GO:0009056: catabolic process2.15E-02
144GO:0048316: seed development2.33E-02
145GO:0010018: far-red light signaling pathway2.43E-02
146GO:0016571: histone methylation2.43E-02
147GO:0009086: methionine biosynthetic process2.43E-02
148GO:1900865: chloroplast RNA modification2.43E-02
149GO:0016573: histone acetylation2.43E-02
150GO:0000723: telomere maintenance2.43E-02
151GO:0006535: cysteine biosynthetic process from serine2.71E-02
152GO:0009641: shade avoidance2.71E-02
153GO:0006298: mismatch repair2.71E-02
154GO:0006259: DNA metabolic process2.71E-02
155GO:0010192: mucilage biosynthetic process2.71E-02
156GO:0031627: telomeric loop formation2.71E-02
157GO:0009299: mRNA transcription2.71E-02
158GO:0009733: response to auxin2.78E-02
159GO:0009627: systemic acquired resistance2.82E-02
160GO:0009416: response to light stimulus2.95E-02
161GO:0006265: DNA topological change3.00E-02
162GO:0009089: lysine biosynthetic process via diaminopimelate3.00E-02
163GO:0009682: induced systemic resistance3.00E-02
164GO:0016485: protein processing3.00E-02
165GO:0048765: root hair cell differentiation3.00E-02
166GO:0009658: chloroplast organization3.19E-02
167GO:0030244: cellulose biosynthetic process3.29E-02
168GO:0010105: negative regulation of ethylene-activated signaling pathway3.31E-02
169GO:0045037: protein import into chloroplast stroma3.31E-02
170GO:0006790: sulfur compound metabolic process3.31E-02
171GO:0010311: lateral root formation3.46E-02
172GO:0000160: phosphorelay signal transduction system3.46E-02
173GO:0009691: cytokinin biosynthetic process3.63E-02
174GO:0010229: inflorescence development3.63E-02
175GO:0009725: response to hormone3.63E-02
176GO:0006094: gluconeogenesis3.63E-02
177GO:0006499: N-terminal protein myristoylation3.63E-02
178GO:0007568: aging3.80E-02
179GO:0010207: photosystem II assembly3.95E-02
180GO:0010020: chloroplast fission3.95E-02
181GO:0009933: meristem structural organization3.95E-02
182GO:0009266: response to temperature stimulus3.95E-02
183GO:0048467: gynoecium development3.95E-02
184GO:0006865: amino acid transport3.98E-02
185GO:0009825: multidimensional cell growth4.29E-02
186GO:0080188: RNA-directed DNA methylation4.29E-02
187GO:0046854: phosphatidylinositol phosphorylation4.29E-02
188GO:0042753: positive regulation of circadian rhythm4.63E-02
189GO:0006863: purine nucleobase transport4.63E-02
190GO:0009833: plant-type primary cell wall biogenesis4.63E-02
191GO:0006839: mitochondrial transport4.74E-02
192GO:0006631: fatty acid metabolic process4.94E-02
193GO:0030150: protein import into mitochondrial matrix4.98E-02
194GO:0006338: chromatin remodeling4.98E-02
195GO:0006289: nucleotide-excision repair4.98E-02
196GO:0007010: cytoskeleton organization4.98E-02
197GO:0019344: cysteine biosynthetic process4.98E-02
RankGO TermAdjusted P value
1GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
2GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
3GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
4GO:0061711: N(6)-L-threonylcarbamoyladenine synthase0.00E+00
5GO:0080176: xyloglucan 1,6-alpha-xylosidase activity0.00E+00
6GO:0004401: histidinol-phosphatase activity0.00E+00
7GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
8GO:0047793: cycloeucalenol cycloisomerase activity0.00E+00
9GO:0052834: inositol monophosphate phosphatase activity0.00E+00
10GO:0061634: alpha-D-xyloside xylohydrolase0.00E+00
11GO:0008805: carbon-monoxide oxygenase activity3.08E-05
12GO:0003723: RNA binding5.03E-05
13GO:0001872: (1->3)-beta-D-glucan binding1.99E-04
14GO:0004805: trehalose-phosphatase activity2.90E-04
15GO:0004519: endonuclease activity4.10E-04
16GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity8.61E-04
17GO:0004831: tyrosine-tRNA ligase activity8.61E-04
18GO:0005290: L-histidine transmembrane transporter activity8.61E-04
19GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity8.61E-04
20GO:0004830: tryptophan-tRNA ligase activity8.61E-04
21GO:0042586: peptide deformylase activity8.61E-04
22GO:0052381: tRNA dimethylallyltransferase activity8.61E-04
23GO:0010347: L-galactose-1-phosphate phosphatase activity8.61E-04
24GO:0047259: glucomannan 4-beta-mannosyltransferase activity8.61E-04
25GO:0005227: calcium activated cation channel activity8.61E-04
26GO:0042834: peptidoglycan binding8.61E-04
27GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds1.14E-03
28GO:0008934: inositol monophosphate 1-phosphatase activity1.87E-03
29GO:0052833: inositol monophosphate 4-phosphatase activity1.87E-03
30GO:0000064: L-ornithine transmembrane transporter activity1.87E-03
31GO:0004826: phenylalanine-tRNA ligase activity1.87E-03
32GO:0004412: homoserine dehydrogenase activity1.87E-03
33GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity1.87E-03
34GO:0050736: O-malonyltransferase activity1.87E-03
35GO:0009884: cytokinin receptor activity1.87E-03
36GO:0050017: L-3-cyanoalanine synthase activity1.87E-03
37GO:0017118: lipoyltransferase activity1.87E-03
38GO:0043425: bHLH transcription factor binding1.87E-03
39GO:0004814: arginine-tRNA ligase activity1.87E-03
40GO:0010296: prenylcysteine methylesterase activity1.87E-03
41GO:0016415: octanoyltransferase activity1.87E-03
42GO:0004047: aminomethyltransferase activity1.87E-03
43GO:0004766: spermidine synthase activity1.87E-03
44GO:0052832: inositol monophosphate 3-phosphatase activity1.87E-03
45GO:0045548: phenylalanine ammonia-lyase activity3.10E-03
46GO:0003913: DNA photolyase activity3.10E-03
47GO:0042781: 3'-tRNA processing endoribonuclease activity3.10E-03
48GO:0004148: dihydrolipoyl dehydrogenase activity3.10E-03
49GO:0016805: dipeptidase activity3.10E-03
50GO:0005034: osmosensor activity3.10E-03
51GO:0004367: glycerol-3-phosphate dehydrogenase [NAD+] activity3.10E-03
52GO:0016707: gibberellin 3-beta-dioxygenase activity3.10E-03
53GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity3.10E-03
54GO:0017172: cysteine dioxygenase activity4.52E-03
55GO:0015181: arginine transmembrane transporter activity4.52E-03
56GO:0080031: methyl salicylate esterase activity4.52E-03
57GO:0004300: enoyl-CoA hydratase activity4.52E-03
58GO:0015189: L-lysine transmembrane transporter activity4.52E-03
59GO:0004072: aspartate kinase activity4.52E-03
60GO:0043047: single-stranded telomeric DNA binding4.52E-03
61GO:0010328: auxin influx transmembrane transporter activity6.11E-03
62GO:0009044: xylan 1,4-beta-xylosidase activity6.11E-03
63GO:0010385: double-stranded methylated DNA binding6.11E-03
64GO:0019199: transmembrane receptor protein kinase activity6.11E-03
65GO:0042277: peptide binding6.11E-03
66GO:0046556: alpha-L-arabinofuranosidase activity6.11E-03
67GO:0004845: uracil phosphoribosyltransferase activity6.11E-03
68GO:0010011: auxin binding6.11E-03
69GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed6.11E-03
70GO:0070628: proteasome binding6.11E-03
71GO:0031418: L-ascorbic acid binding6.94E-03
72GO:0005096: GTPase activator activity7.01E-03
73GO:0004871: signal transducer activity7.17E-03
74GO:0005471: ATP:ADP antiporter activity7.87E-03
75GO:0008725: DNA-3-methyladenine glycosylase activity7.87E-03
76GO:0004784: superoxide dismutase activity9.80E-03
77GO:2001070: starch binding9.80E-03
78GO:0030983: mismatched DNA binding9.80E-03
79GO:0080030: methyl indole-3-acetate esterase activity9.80E-03
80GO:0004332: fructose-bisphosphate aldolase activity9.80E-03
81GO:0004709: MAP kinase kinase kinase activity9.80E-03
82GO:0031593: polyubiquitin binding9.80E-03
83GO:0030570: pectate lyase activity1.01E-02
84GO:0004849: uridine kinase activity1.19E-02
85GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity1.19E-02
86GO:0016832: aldehyde-lyase activity1.19E-02
87GO:0004656: procollagen-proline 4-dioxygenase activity1.19E-02
88GO:0019900: kinase binding1.19E-02
89GO:0004124: cysteine synthase activity1.19E-02
90GO:0051753: mannan synthase activity1.19E-02
91GO:0004812: aminoacyl-tRNA ligase activity1.20E-02
92GO:0005525: GTP binding1.34E-02
93GO:0043621: protein self-association1.37E-02
94GO:0009881: photoreceptor activity1.41E-02
95GO:0019899: enzyme binding1.41E-02
96GO:0042162: telomeric DNA binding1.41E-02
97GO:0004675: transmembrane receptor protein serine/threonine kinase activity1.50E-02
98GO:0019901: protein kinase binding1.62E-02
99GO:0016301: kinase activity1.69E-02
100GO:0016762: xyloglucan:xyloglucosyl transferase activity1.74E-02
101GO:0004518: nuclease activity1.86E-02
102GO:0046914: transition metal ion binding1.89E-02
103GO:0003690: double-stranded DNA binding1.89E-02
104GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity1.89E-02
105GO:0051015: actin filament binding1.98E-02
106GO:0003777: microtubule motor activity2.06E-02
107GO:0016759: cellulose synthase activity2.11E-02
108GO:0003684: damaged DNA binding2.11E-02
109GO:0008237: metallopeptidase activity2.24E-02
110GO:0016413: O-acetyltransferase activity2.38E-02
111GO:0009672: auxin:proton symporter activity2.43E-02
112GO:0004673: protein histidine kinase activity2.71E-02
113GO:0003779: actin binding2.73E-02
114GO:0030247: polysaccharide binding2.97E-02
115GO:0016798: hydrolase activity, acting on glycosyl bonds2.97E-02
116GO:0003691: double-stranded telomeric DNA binding3.00E-02
117GO:0005089: Rho guanyl-nucleotide exchange factor activity3.00E-02
118GO:0008327: methyl-CpG binding3.00E-02
119GO:0000049: tRNA binding3.31E-02
120GO:0010329: auxin efflux transmembrane transporter activity3.63E-02
121GO:0015266: protein channel activity3.63E-02
122GO:0015095: magnesium ion transmembrane transporter activity3.63E-02
123GO:0000155: phosphorelay sensor kinase activity3.63E-02
124GO:0009982: pseudouridine synthase activity3.63E-02
125GO:0004222: metalloendopeptidase activity3.63E-02
126GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.80E-02
127GO:0042973: glucan endo-1,3-beta-D-glucosidase activity3.95E-02
128GO:0008266: poly(U) RNA binding3.95E-02
129GO:0008061: chitin binding4.29E-02
130GO:0003712: transcription cofactor activity4.29E-02
131GO:0102337: 3-oxo-cerotoyl-CoA synthase activity4.63E-02
132GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity4.63E-02
133GO:0102336: 3-oxo-arachidoyl-CoA synthase activity4.63E-02
134GO:0008134: transcription factor binding4.98E-02
135GO:0004857: enzyme inhibitor activity4.98E-02
136GO:0043130: ubiquitin binding4.98E-02
137GO:0005528: FK506 binding4.98E-02
RankGO TermAdjusted P value
1GO:0000408: EKC/KEOPS complex0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0035452: extrinsic component of plastid membrane0.00E+00
4GO:0009507: chloroplast4.60E-07
5GO:0010370: perinucleolar chromocenter8.61E-04
6GO:0009986: cell surface1.14E-03
7GO:0009707: chloroplast outer membrane1.24E-03
8GO:0005871: kinesin complex1.81E-03
9GO:0005697: telomerase holoenzyme complex1.87E-03
10GO:0009513: etioplast1.87E-03
11GO:0009509: chromoplast3.10E-03
12GO:0030139: endocytic vesicle3.10E-03
13GO:0005759: mitochondrial matrix3.93E-03
14GO:0009570: chloroplast stroma3.97E-03
15GO:0009295: nucleoid4.02E-03
16GO:0032432: actin filament bundle4.52E-03
17GO:0009331: glycerol-3-phosphate dehydrogenase complex4.52E-03
18GO:0042646: plastid nucleoid4.52E-03
19GO:0032585: multivesicular body membrane4.52E-03
20GO:0030529: intracellular ribonucleoprotein complex4.67E-03
21GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)6.11E-03
22GO:0005886: plasma membrane6.23E-03
23GO:0046658: anchored component of plasma membrane7.62E-03
24GO:0031305: integral component of mitochondrial inner membrane1.64E-02
25GO:0009501: amyloplast1.64E-02
26GO:0000783: nuclear telomere cap complex1.89E-02
27GO:0000784: nuclear chromosome, telomeric region1.89E-02
28GO:0042644: chloroplast nucleoid2.15E-02
29GO:0005720: nuclear heterochromatin2.15E-02
30GO:0005884: actin filament3.00E-02
31GO:0009508: plastid chromosome3.63E-02
32GO:0009574: preprophase band3.63E-02
33GO:0016602: CCAAT-binding factor complex3.63E-02
34GO:0005578: proteinaceous extracellular matrix3.63E-02
35GO:0005768: endosome3.93E-02
36GO:0030095: chloroplast photosystem II3.95E-02
37GO:0005874: microtubule4.15E-02
38GO:0031969: chloroplast membrane4.36E-02
39GO:0005875: microtubule associated complex4.63E-02
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Gene type



Gene DE type