co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G28105

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0010726: positive regulation of hydrogen peroxide metabolic process	7.23E-05
4	GO:0090506: axillary shoot meristem initiation	2.93E-04
5	GO:0003006: developmental process involved in reproduction	8.73E-04
6	GO:0010942: positive regulation of cell death	8.73E-04
7	GO:0006694: steroid biosynthetic process	1.04E-03
8	GO:0042255: ribosome assembly	1.40E-03
9	GO:0006353: DNA-templated transcription, termination	1.40E-03
10	GO:0006402: mRNA catabolic process	1.40E-03
11	GO:0009704: de-etiolation	1.40E-03
12	GO:0007186: G-protein coupled receptor signaling pathway	1.59E-03
13	GO:0048507: meristem development	1.80E-03
14	GO:0000373: Group II intron splicing	1.80E-03
15	GO:0009056: catabolic process	1.80E-03
16	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.23E-03
17	GO:0009750: response to fructose	2.46E-03
18	GO:0010582: floral meristem determinacy	2.70E-03
19	GO:0010102: lateral root morphogenesis	2.94E-03
20	GO:2000028: regulation of photoperiodism, flowering	2.94E-03
21	GO:0010223: secondary shoot formation	3.19E-03
22	GO:0009887: animal organ morphogenesis	3.19E-03
23	GO:0006302: double-strand break repair	3.19E-03
24	GO:0048467: gynoecium development	3.19E-03
25	GO:0080188: RNA-directed DNA methylation	3.44E-03
26	GO:0009969: xyloglucan biosynthetic process	3.44E-03
27	GO:0006863: purine nucleobase transport	3.71E-03
28	GO:0051321: meiotic cell cycle	4.54E-03
29	GO:0016114: terpenoid biosynthetic process	4.54E-03
30	GO:0006306: DNA methylation	4.54E-03
31	GO:0071215: cellular response to abscisic acid stimulus	5.13E-03
32	GO:0001944: vasculature development	5.13E-03
33	GO:0009749: response to glucose	7.04E-03
34	GO:0002229: defense response to oomycetes	7.38E-03
35	GO:0009658: chloroplast organization	7.59E-03
36	GO:0031047: gene silencing by RNA	7.72E-03
37	GO:0019761: glucosinolate biosynthetic process	7.72E-03
38	GO:0009723: response to ethylene	8.78E-03
39	GO:0048573: photoperiodism, flowering	1.07E-02
40	GO:0045892: negative regulation of transcription, DNA-templated	1.15E-02
41	GO:0048527: lateral root development	1.27E-02
42	GO:0007568: aging	1.27E-02
43	GO:0009733: response to auxin	1.31E-02
44	GO:0009744: response to sucrose	1.63E-02
45	GO:0042546: cell wall biogenesis	1.67E-02
46	GO:0009734: auxin-activated signaling pathway	1.97E-02
47	GO:0006351: transcription, DNA-templated	2.27E-02
48	GO:0048367: shoot system development	2.31E-02
49	GO:0045893: positive regulation of transcription, DNA-templated	2.84E-02
50	GO:0009737: response to abscisic acid	2.94E-02
51	GO:0040008: regulation of growth	3.69E-02
52	GO:0010228: vegetative to reproductive phase transition of meristem	3.94E-02
53	GO:0009739: response to gibberellin	4.13E-02
54	GO:0006470: protein dephosphorylation	4.19E-02
55	GO:0008380: RNA splicing	4.32E-02
56	GO:0016567: protein ubiquitination	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0017022: myosin binding	1.74E-04
2	GO:0010296: prenylcysteine methylesterase activity	1.74E-04
3	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	7.14E-04
4	GO:0008378: galactosyltransferase activity	2.70E-03
5	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	4.06E-03
6	GO:0005345: purine nucleobase transmembrane transporter activity	4.26E-03
7	GO:0033612: receptor serine/threonine kinase binding	4.54E-03
8	GO:0008408: 3'-5' exonuclease activity	4.54E-03
9	GO:0010333: terpene synthase activity	4.54E-03
10	GO:0003727: single-stranded RNA binding	5.43E-03
11	GO:0043531: ADP binding	8.32E-03
12	GO:0016759: cellulose synthase activity	8.43E-03
13	GO:0051213: dioxygenase activity	9.54E-03
14	GO:0008236: serine-type peptidase activity	1.11E-02
15	GO:0004871: signal transducer activity	1.18E-02
16	GO:0004722: protein serine/threonine phosphatase activity	1.24E-02
17	GO:0030145: manganese ion binding	1.27E-02
18	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.36E-02
19	GO:0043621: protein self-association	1.72E-02
20	GO:0003690: double-stranded DNA binding	2.06E-02
21	GO:0003700: transcription factor activity, sequence-specific DNA binding	2.14E-02
22	GO:0015035: protein disulfide oxidoreductase activity	2.64E-02
23	GO:0019843: rRNA binding	3.03E-02
24	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.09E-02

Rank	GO Term	Adjusted P value
1	GO:0000791: euchromatin	7.23E-05
2	GO:0030870: Mre11 complex	1.74E-04
3	GO:0000795: synaptonemal complex	7.14E-04
4	GO:0000419: DNA-directed RNA polymerase V complex	3.71E-03
5	GO:0005875: microtubule associated complex	3.71E-03
6	GO:0009532: plastid stroma	4.54E-03
7	GO:0009504: cell plate	7.04E-03
8	GO:0016592: mediator complex	7.72E-03
9	GO:0000785: chromatin	7.72E-03
10	GO:0030529: intracellular ribonucleoprotein complex	9.54E-03
11	GO:0010008: endosome membrane	2.31E-02
12	GO:0005834: heterotrimeric G-protein complex	2.37E-02
13	GO:0005634: nucleus	3.30E-02
14	GO:0005615: extracellular space	4.13E-02