co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G27960

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
2	GO:0018131: oxazole or thiazole biosynthetic process	0.00E+00
3	GO:0033494: ferulate metabolic process	0.00E+00
4	GO:0042821: pyridoxal biosynthetic process	0.00E+00
5	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
6	GO:0042820: vitamin B6 catabolic process	0.00E+00
7	GO:0009661: chromoplast organization	0.00E+00
8	GO:0009768: photosynthesis, light harvesting in photosystem I	1.31E-05
9	GO:0009854: oxidative photosynthetic carbon pathway	3.53E-05
10	GO:0009791: post-embryonic development	4.38E-05
11	GO:0019252: starch biosynthetic process	4.38E-05
12	GO:0009645: response to low light intensity stimulus	4.78E-05
13	GO:0050821: protein stabilization	6.23E-05
14	GO:0015979: photosynthesis	6.61E-05
15	GO:0071482: cellular response to light stimulus	7.89E-05
16	GO:0043953: protein transport by the Tat complex	1.06E-04
17	GO:0009443: pyridoxal 5'-phosphate salvage	1.06E-04
18	GO:0046467: membrane lipid biosynthetic process	1.06E-04
19	GO:0000481: maturation of 5S rRNA	1.06E-04
20	GO:0006659: phosphatidylserine biosynthetic process	1.06E-04
21	GO:0065002: intracellular protein transmembrane transport	1.06E-04
22	GO:0071461: cellular response to redox state	1.06E-04
23	GO:0034337: RNA folding	1.06E-04
24	GO:0018298: protein-chromophore linkage	1.27E-04
25	GO:0051645: Golgi localization	2.48E-04
26	GO:0034755: iron ion transmembrane transport	2.48E-04
27	GO:0071457: cellular response to ozone	2.48E-04
28	GO:0080005: photosystem stoichiometry adjustment	2.48E-04
29	GO:0060151: peroxisome localization	2.48E-04
30	GO:1904143: positive regulation of carotenoid biosynthetic process	2.48E-04
31	GO:0006636: unsaturated fatty acid biosynthetic process	3.14E-04
32	GO:0051646: mitochondrion localization	4.12E-04
33	GO:0090436: leaf pavement cell development	4.12E-04
34	GO:0005977: glycogen metabolic process	4.12E-04
35	GO:0055114: oxidation-reduction process	5.53E-04
36	GO:0010731: protein glutathionylation	5.92E-04
37	GO:2001141: regulation of RNA biosynthetic process	5.92E-04
38	GO:0071484: cellular response to light intensity	5.92E-04
39	GO:0009765: photosynthesis, light harvesting	7.86E-04
40	GO:0010107: potassium ion import	7.86E-04
41	GO:0006021: inositol biosynthetic process	7.86E-04
42	GO:0010021: amylopectin biosynthetic process	7.86E-04
43	GO:0071486: cellular response to high light intensity	7.86E-04
44	GO:0006465: signal peptide processing	9.92E-04
45	GO:0071493: cellular response to UV-B	9.92E-04
46	GO:0016120: carotene biosynthetic process	9.92E-04
47	GO:0098719: sodium ion import across plasma membrane	9.92E-04
48	GO:0010236: plastoquinone biosynthetic process	9.92E-04
49	GO:0009228: thiamine biosynthetic process	1.21E-03
50	GO:0010190: cytochrome b6f complex assembly	1.21E-03
51	GO:0050665: hydrogen peroxide biosynthetic process	1.21E-03
52	GO:0010264: myo-inositol hexakisphosphate biosynthetic process	1.21E-03
53	GO:0071333: cellular response to glucose stimulus	1.45E-03
54	GO:0010189: vitamin E biosynthetic process	1.45E-03
55	GO:1900056: negative regulation of leaf senescence	1.70E-03
56	GO:0009769: photosynthesis, light harvesting in photosystem II	1.70E-03
57	GO:0010218: response to far red light	1.70E-03
58	GO:0009637: response to blue light	1.94E-03
59	GO:0032508: DNA duplex unwinding	1.97E-03
60	GO:0055075: potassium ion homeostasis	1.97E-03
61	GO:0052543: callose deposition in cell wall	1.97E-03
62	GO:0016559: peroxisome fission	1.97E-03
63	GO:0009658: chloroplast organization	2.00E-03
64	GO:0019430: removal of superoxide radicals	2.24E-03
65	GO:0010204: defense response signaling pathway, resistance gene-independent	2.24E-03
66	GO:0017004: cytochrome complex assembly	2.24E-03
67	GO:0006098: pentose-phosphate shunt	2.53E-03
68	GO:0090333: regulation of stomatal closure	2.53E-03
69	GO:0009644: response to high light intensity	2.70E-03
70	GO:0010380: regulation of chlorophyll biosynthetic process	2.84E-03
71	GO:0051453: regulation of intracellular pH	2.84E-03
72	GO:0005982: starch metabolic process	2.84E-03
73	GO:0043069: negative regulation of programmed cell death	3.15E-03
74	GO:0006879: cellular iron ion homeostasis	3.47E-03
75	GO:0006352: DNA-templated transcription, initiation	3.47E-03
76	GO:0030048: actin filament-based movement	4.16E-03
77	GO:0006094: gluconeogenesis	4.16E-03
78	GO:0048467: gynoecium development	4.52E-03
79	GO:0010143: cutin biosynthetic process	4.52E-03
80	GO:0010020: chloroplast fission	4.52E-03
81	GO:0010207: photosystem II assembly	4.52E-03
82	GO:0042343: indole glucosinolate metabolic process	4.88E-03
83	GO:0010025: wax biosynthetic process	5.26E-03
84	GO:0006833: water transport	5.26E-03
85	GO:0009269: response to desiccation	6.46E-03
86	GO:0098542: defense response to other organism	6.46E-03
87	GO:0030433: ubiquitin-dependent ERAD pathway	6.87E-03
88	GO:0071215: cellular response to abscisic acid stimulus	7.30E-03
89	GO:0006633: fatty acid biosynthetic process	7.46E-03
90	GO:0009409: response to cold	8.37E-03
91	GO:0042631: cellular response to water deprivation	8.64E-03
92	GO:0034220: ion transmembrane transport	8.64E-03
93	GO:0071472: cellular response to salt stress	9.10E-03
94	GO:0010154: fruit development	9.10E-03
95	GO:0006885: regulation of pH	9.10E-03
96	GO:0006520: cellular amino acid metabolic process	9.10E-03
97	GO:0006814: sodium ion transport	9.58E-03
98	GO:0008654: phospholipid biosynthetic process	1.01E-02
99	GO:0010090: trichome morphogenesis	1.16E-02
100	GO:1901657: glycosyl compound metabolic process	1.16E-02
101	GO:0009567: double fertilization forming a zygote and endosperm	1.21E-02
102	GO:0010027: thylakoid membrane organization	1.37E-02
103	GO:0006974: cellular response to DNA damage stimulus	1.48E-02
104	GO:0015995: chlorophyll biosynthetic process	1.54E-02
105	GO:0016311: dephosphorylation	1.59E-02
106	GO:0016049: cell growth	1.59E-02
107	GO:0009910: negative regulation of flower development	1.83E-02
108	GO:0009631: cold acclimation	1.83E-02
109	GO:0009853: photorespiration	1.95E-02
110	GO:0034599: cellular response to oxidative stress	2.02E-02
111	GO:0006631: fatty acid metabolic process	2.21E-02
112	GO:0010114: response to red light	2.34E-02
113	GO:0000209: protein polyubiquitination	2.41E-02
114	GO:0009636: response to toxic substance	2.54E-02
115	GO:0006096: glycolytic process	3.26E-02
116	GO:0006810: transport	3.52E-02
117	GO:0005975: carbohydrate metabolic process	3.66E-02
118	GO:0009624: response to nematode	3.72E-02
119	GO:0009735: response to cytokinin	3.78E-02
120	GO:0009845: seed germination	4.61E-02

Rank	GO Term	Adjusted P value
1	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
2	GO:0050236: pyridoxine:NADP 4-dehydrogenase activity	0.00E+00
3	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
4	GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity	0.00E+00
5	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
6	GO:0008465: glycerate dehydrogenase activity	0.00E+00
7	GO:0009011: starch synthase activity	2.96E-08
8	GO:0031409: pigment binding	9.20E-06
9	GO:0016491: oxidoreductase activity	1.30E-05
10	GO:0016168: chlorophyll binding	9.36E-05
11	GO:0080132: fatty acid alpha-hydroxylase activity	1.06E-04
12	GO:0004328: formamidase activity	1.06E-04
13	GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity	1.06E-04
14	GO:0033201: alpha-1,4-glucan synthase activity	2.48E-04
15	GO:0004312: fatty acid synthase activity	2.48E-04
16	GO:0004512: inositol-3-phosphate synthase activity	2.48E-04
17	GO:0019156: isoamylase activity	2.48E-04
18	GO:0004103: choline kinase activity	2.48E-04
19	GO:0009977: proton motive force dependent protein transmembrane transporter activity	2.48E-04
20	GO:0004373: glycogen (starch) synthase activity	4.12E-04
21	GO:0050734: hydroxycinnamoyltransferase activity	4.12E-04
22	GO:0070402: NADPH binding	4.12E-04
23	GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity	4.12E-04
24	GO:0052854: medium-chain-(S)-2-hydroxy-acid oxidase activity	5.92E-04
25	GO:0016851: magnesium chelatase activity	5.92E-04
26	GO:0016811: hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	5.92E-04
27	GO:0052852: very-long-chain-(S)-2-hydroxy-acid oxidase activity	5.92E-04
28	GO:0052853: long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	5.92E-04
29	GO:0001872: (1->3)-beta-D-glucan binding	5.92E-04
30	GO:0004045: aminoacyl-tRNA hydrolase activity	7.86E-04
31	GO:0016987: sigma factor activity	7.86E-04
32	GO:0008891: glycolate oxidase activity	7.86E-04
33	GO:0001053: plastid sigma factor activity	7.86E-04
34	GO:0016846: carbon-sulfur lyase activity	9.92E-04
35	GO:0004332: fructose-bisphosphate aldolase activity	1.21E-03
36	GO:0004784: superoxide dismutase activity	1.21E-03
37	GO:0004556: alpha-amylase activity	1.21E-03
38	GO:0015081: sodium ion transmembrane transporter activity	1.21E-03
39	GO:0042802: identical protein binding	1.56E-03
40	GO:0004033: aldo-keto reductase (NADP) activity	1.97E-03
41	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.12E-03
42	GO:0008135: translation factor activity, RNA binding	2.24E-03
43	GO:0005381: iron ion transmembrane transporter activity	2.84E-03
44	GO:0015386: potassium:proton antiporter activity	3.47E-03
45	GO:0003774: motor activity	4.52E-03
46	GO:0008266: poly(U) RNA binding	4.52E-03
47	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	4.52E-03
48	GO:0005528: FK506 binding	5.65E-03
49	GO:0010181: FMN binding	9.58E-03
50	GO:0015385: sodium:proton antiporter activity	1.16E-02
51	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.27E-02
52	GO:0015250: water channel activity	1.37E-02
53	GO:0102483: scopolin beta-glucosidase activity	1.54E-02
54	GO:0030247: polysaccharide binding	1.54E-02
55	GO:0008757: S-adenosylmethionine-dependent methyltransferase activity	1.59E-02
56	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.83E-02
57	GO:0003746: translation elongation factor activity	1.95E-02
58	GO:0042803: protein homodimerization activity	1.98E-02
59	GO:0003993: acid phosphatase activity	2.02E-02
60	GO:0008422: beta-glucosidase activity	2.08E-02
61	GO:0004364: glutathione transferase activity	2.27E-02
62	GO:0003924: GTPase activity	2.33E-02
63	GO:0005215: transporter activity	2.47E-02
64	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.61E-02
65	GO:0051287: NAD binding	2.68E-02
66	GO:0003899: DNA-directed 5'-3' RNA polymerase activity	2.89E-02
67	GO:0031625: ubiquitin protein ligase binding	3.11E-02
68	GO:0004672: protein kinase activity	3.52E-02
69	GO:0022857: transmembrane transporter activity	3.56E-02
70	GO:0016887: ATPase activity	3.61E-02
71	GO:0003779: actin binding	3.64E-02

Rank	GO Term	Adjusted P value
1	GO:0043235: receptor complex	0.00E+00
2	GO:0009507: chloroplast	4.07E-16
3	GO:0009941: chloroplast envelope	6.32E-07
4	GO:0010287: plastoglobule	4.13E-06
5	GO:0030076: light-harvesting complex	7.61E-06
6	GO:0009522: photosystem I	3.92E-05
7	GO:0009570: chloroplast stroma	9.83E-05
8	GO:0031361: integral component of thylakoid membrane	1.06E-04
9	GO:0009782: photosystem I antenna complex	1.06E-04
10	GO:0005787: signal peptidase complex	1.06E-04
11	GO:0009535: chloroplast thylakoid membrane	3.52E-04
12	GO:0010007: magnesium chelatase complex	4.12E-04
13	GO:0033281: TAT protein transport complex	4.12E-04
14	GO:0030658: transport vesicle membrane	5.92E-04
15	GO:0009517: PSII associated light-harvesting complex II	7.86E-04
16	GO:0009523: photosystem II	7.87E-04
17	GO:0009501: amyloplast	1.97E-03
18	GO:0005777: peroxisome	2.24E-03
19	GO:0031977: thylakoid lumen	2.30E-03
20	GO:0009579: thylakoid	2.38E-03
21	GO:0016459: myosin complex	3.15E-03
22	GO:0032040: small-subunit processome	3.81E-03
23	GO:0016021: integral component of membrane	5.76E-03
24	GO:0009543: chloroplast thylakoid lumen	5.94E-03
25	GO:0005773: vacuole	7.44E-03
26	GO:0010319: stromule	1.26E-02
27	GO:0030529: intracellular ribonucleoprotein complex	1.37E-02
28	GO:0031969: chloroplast membrane	1.58E-02
29	GO:0009707: chloroplast outer membrane	1.65E-02
30	GO:0009536: plastid	2.81E-02
31	GO:0048046: apoplast	3.65E-02
32	GO:0009706: chloroplast inner membrane	3.72E-02
33	GO:0005623: cell	4.45E-02