Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G27060

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0006437: tyrosyl-tRNA aminoacylation0.00E+00
2GO:0070125: mitochondrial translational elongation0.00E+00
3GO:0019685: photosynthesis, dark reaction0.00E+00
4GO:0010081: regulation of inflorescence meristem growth0.00E+00
5GO:0090706: specification of plant organ position0.00E+00
6GO:0071000: response to magnetism0.00E+00
7GO:0009583: detection of light stimulus0.00E+00
8GO:0000372: Group I intron splicing0.00E+00
9GO:0080127: fruit septum development0.00E+00
10GO:0007638: mechanosensory behavior0.00E+00
11GO:0032212: positive regulation of telomere maintenance via telomerase0.00E+00
12GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
13GO:0032206: positive regulation of telomere maintenance0.00E+00
14GO:0000373: Group II intron splicing1.13E-06
15GO:0010158: abaxial cell fate specification3.41E-06
16GO:0009733: response to auxin6.32E-06
17GO:0009926: auxin polar transport8.85E-06
18GO:0046620: regulation of organ growth2.58E-05
19GO:0016117: carotenoid biosynthetic process5.34E-05
20GO:0009734: auxin-activated signaling pathway6.04E-05
21GO:0010582: floral meristem determinacy1.29E-04
22GO:0009793: embryo development ending in seed dormancy1.69E-04
23GO:1902183: regulation of shoot apical meristem development2.02E-04
24GO:0016123: xanthophyll biosynthetic process2.02E-04
25GO:0006436: tryptophanyl-tRNA aminoacylation4.84E-04
26GO:0000066: mitochondrial ornithine transport4.84E-04
27GO:0051013: microtubule severing4.84E-04
28GO:0010450: inflorescence meristem growth4.84E-04
29GO:0034757: negative regulation of iron ion transport4.84E-04
30GO:0043489: RNA stabilization4.84E-04
31GO:0010080: regulation of floral meristem growth4.84E-04
32GO:0072387: flavin adenine dinucleotide metabolic process4.84E-04
33GO:0043087: regulation of GTPase activity4.84E-04
34GO:0043609: regulation of carbon utilization4.84E-04
35GO:0071482: cellular response to light stimulus7.45E-04
36GO:0009657: plastid organization7.45E-04
37GO:2000024: regulation of leaf development8.92E-04
38GO:0043039: tRNA aminoacylation1.04E-03
39GO:0010343: singlet oxygen-mediated programmed cell death1.04E-03
40GO:1901529: positive regulation of anion channel activity1.04E-03
41GO:0048255: mRNA stabilization1.04E-03
42GO:0010617: circadian regulation of calcium ion oscillation1.04E-03
43GO:0010569: regulation of double-strand break repair via homologous recombination1.04E-03
44GO:0010271: regulation of chlorophyll catabolic process1.04E-03
45GO:0099402: plant organ development1.04E-03
46GO:0006435: threonyl-tRNA aminoacylation1.04E-03
47GO:0001736: establishment of planar polarity1.04E-03
48GO:0009786: regulation of asymmetric cell division1.04E-03
49GO:0048829: root cap development1.22E-03
50GO:0045037: protein import into chloroplast stroma1.61E-03
51GO:0045165: cell fate commitment1.70E-03
52GO:0030029: actin filament-based process1.70E-03
53GO:0045910: negative regulation of DNA recombination1.70E-03
54GO:1902448: positive regulation of shade avoidance1.70E-03
55GO:0080117: secondary growth1.70E-03
56GO:0006000: fructose metabolic process1.70E-03
57GO:0080055: low-affinity nitrate transport1.70E-03
58GO:0010022: meristem determinacy1.70E-03
59GO:1901672: positive regulation of systemic acquired resistance1.70E-03
60GO:0006696: ergosterol biosynthetic process1.70E-03
61GO:0006094: gluconeogenesis1.84E-03
62GO:0010207: photosystem II assembly2.07E-03
63GO:0009933: meristem structural organization2.07E-03
64GO:0009825: multidimensional cell growth2.32E-03
65GO:0051513: regulation of monopolar cell growth2.47E-03
66GO:0007231: osmosensory signaling pathway2.47E-03
67GO:0051639: actin filament network formation2.47E-03
68GO:0034059: response to anoxia2.47E-03
69GO:0010239: chloroplast mRNA processing2.47E-03
70GO:0009800: cinnamic acid biosynthetic process2.47E-03
71GO:1901332: negative regulation of lateral root development2.47E-03
72GO:1990019: protein storage vacuole organization2.47E-03
73GO:2001141: regulation of RNA biosynthetic process2.47E-03
74GO:0009944: polarity specification of adaxial/abaxial axis2.88E-03
75GO:0006418: tRNA aminoacylation for protein translation3.17E-03
76GO:0051781: positive regulation of cell division3.32E-03
77GO:0051764: actin crosslink formation3.32E-03
78GO:0009765: photosynthesis, light harvesting3.32E-03
79GO:0033500: carbohydrate homeostasis3.32E-03
80GO:0006021: inositol biosynthetic process3.32E-03
81GO:1902347: response to strigolactone3.32E-03
82GO:0008295: spermidine biosynthetic process3.32E-03
83GO:0009956: radial pattern formation3.32E-03
84GO:0040008: regulation of growth4.04E-03
85GO:0009831: plant-type cell wall modification involved in multidimensional cell growth4.17E-03
86GO:0009107: lipoate biosynthetic process4.26E-03
87GO:0080110: sporopollenin biosynthetic process4.26E-03
88GO:0010117: photoprotection4.26E-03
89GO:0046283: anthocyanin-containing compound metabolic process4.26E-03
90GO:0010236: plastoquinone biosynthetic process4.26E-03
91GO:0016120: carotene biosynthetic process4.26E-03
92GO:0009451: RNA modification4.49E-03
93GO:0009965: leaf morphogenesis4.64E-03
94GO:0060918: auxin transport5.27E-03
95GO:0016554: cytidine to uridine editing5.27E-03
96GO:0048831: regulation of shoot system development5.27E-03
97GO:0003006: developmental process involved in reproduction5.27E-03
98GO:0009920: cell plate formation involved in plant-type cell wall biogenesis5.27E-03
99GO:1901371: regulation of leaf morphogenesis5.27E-03
100GO:0006559: L-phenylalanine catabolic process5.27E-03
101GO:0009664: plant-type cell wall organization5.35E-03
102GO:0009958: positive gravitropism5.74E-03
103GO:0010154: fruit development5.74E-03
104GO:0010310: regulation of hydrogen peroxide metabolic process6.36E-03
105GO:0010244: response to low fluence blue light stimulus by blue low-fluence system6.36E-03
106GO:0009942: longitudinal axis specification6.36E-03
107GO:0048509: regulation of meristem development6.36E-03
108GO:0030488: tRNA methylation6.36E-03
109GO:0009610: response to symbiotic fungus7.52E-03
110GO:0006955: immune response7.52E-03
111GO:0010098: suspensor development7.52E-03
112GO:0010050: vegetative phase change7.52E-03
113GO:0051510: regulation of unidimensional cell growth7.52E-03
114GO:0015693: magnesium ion transport7.52E-03
115GO:0048316: seed development7.56E-03
116GO:0009828: plant-type cell wall loosening8.62E-03
117GO:0000105: histidine biosynthetic process8.76E-03
118GO:0048564: photosystem I assembly8.76E-03
119GO:0009850: auxin metabolic process8.76E-03
120GO:0070413: trehalose metabolism in response to stress8.76E-03
121GO:0010093: specification of floral organ identity1.01E-02
122GO:0009932: cell tip growth1.01E-02
123GO:0006002: fructose 6-phosphate metabolic process1.01E-02
124GO:0032544: plastid translation1.01E-02
125GO:0048574: long-day photoperiodism, flowering1.01E-02
126GO:0007389: pattern specification process1.01E-02
127GO:0090305: nucleic acid phosphodiester bond hydrolysis1.14E-02
128GO:0006098: pentose-phosphate shunt1.14E-02
129GO:0048507: meristem development1.14E-02
130GO:0010411: xyloglucan metabolic process1.22E-02
131GO:0005982: starch metabolic process1.29E-02
132GO:1900426: positive regulation of defense response to bacterium1.29E-02
133GO:0009638: phototropism1.29E-02
134GO:0042761: very long-chain fatty acid biosynthetic process1.29E-02
135GO:0006779: porphyrin-containing compound biosynthetic process1.29E-02
136GO:0000723: telomere maintenance1.29E-02
137GO:0016571: histone methylation1.29E-02
138GO:1900865: chloroplast RNA modification1.29E-02
139GO:0016573: histone acetylation1.29E-02
140GO:0018298: protein-chromophore linkage1.35E-02
141GO:0000160: phosphorelay signal transduction system1.42E-02
142GO:0010311: lateral root formation1.42E-02
143GO:0006298: mismatch repair1.44E-02
144GO:0006949: syncytium formation1.44E-02
145GO:0009299: mRNA transcription1.44E-02
146GO:0006535: cysteine biosynthetic process from serine1.44E-02
147GO:0006782: protoporphyrinogen IX biosynthetic process1.44E-02
148GO:0019538: protein metabolic process1.44E-02
149GO:0048765: root hair cell differentiation1.59E-02
150GO:0006816: calcium ion transport1.59E-02
151GO:0006352: DNA-templated transcription, initiation1.59E-02
152GO:0009750: response to fructose1.59E-02
153GO:0006415: translational termination1.59E-02
154GO:0006865: amino acid transport1.64E-02
155GO:0009416: response to light stimulus1.66E-02
156GO:0006790: sulfur compound metabolic process1.75E-02
157GO:0005983: starch catabolic process1.75E-02
158GO:0045490: pectin catabolic process1.85E-02
159GO:0010075: regulation of meristem growth1.92E-02
160GO:0009725: response to hormone1.92E-02
161GO:0009785: blue light signaling pathway1.92E-02
162GO:0006839: mitochondrial transport1.96E-02
163GO:0071555: cell wall organization2.09E-02
164GO:0010540: basipetal auxin transport2.09E-02
165GO:0009266: response to temperature stimulus2.09E-02
166GO:0048467: gynoecium development2.09E-02
167GO:0010020: chloroplast fission2.09E-02
168GO:0046854: phosphatidylinositol phosphorylation2.27E-02
169GO:0010053: root epidermal cell differentiation2.27E-02
170GO:0080188: RNA-directed DNA methylation2.27E-02
171GO:0070588: calcium ion transmembrane transport2.27E-02
172GO:0042546: cell wall biogenesis2.30E-02
173GO:0010025: wax biosynthetic process2.45E-02
174GO:0005992: trehalose biosynthetic process2.64E-02
175GO:0019344: cysteine biosynthetic process2.64E-02
176GO:0051017: actin filament bundle assembly2.64E-02
177GO:0006338: chromatin remodeling2.64E-02
178GO:0006289: nucleotide-excision repair2.64E-02
179GO:0007010: cytoskeleton organization2.64E-02
180GO:2000377: regulation of reactive oxygen species metabolic process2.64E-02
181GO:0043622: cortical microtubule organization2.83E-02
182GO:0009736: cytokinin-activated signaling pathway2.98E-02
183GO:0048511: rhythmic process3.03E-02
184GO:0003333: amino acid transmembrane transport3.03E-02
185GO:0016998: cell wall macromolecule catabolic process3.03E-02
186GO:0009826: unidimensional cell growth3.05E-02
187GO:0007275: multicellular organism development3.17E-02
188GO:0009658: chloroplast organization3.20E-02
189GO:0016226: iron-sulfur cluster assembly3.23E-02
190GO:0035428: hexose transmembrane transport3.23E-02
191GO:0009909: regulation of flower development3.31E-02
192GO:0010082: regulation of root meristem growth3.44E-02
193GO:0071215: cellular response to abscisic acid stimulus3.44E-02
194GO:0010584: pollen exine formation3.65E-02
195GO:0010091: trichome branching3.65E-02
196GO:0006284: base-excision repair3.65E-02
197GO:0070417: cellular response to cold3.86E-02
198GO:0009740: gibberellic acid mediated signaling pathway3.99E-02
199GO:0010118: stomatal movement4.08E-02
200GO:0000226: microtubule cytoskeleton organization4.08E-02
201GO:0000271: polysaccharide biosynthetic process4.08E-02
202GO:0034220: ion transmembrane transport4.08E-02
203GO:0010087: phloem or xylem histogenesis4.08E-02
204GO:0080167: response to karrikin4.17E-02
205GO:0009624: response to nematode4.24E-02
206GO:0048868: pollen tube development4.31E-02
207GO:0046323: glucose import4.31E-02
208GO:0045489: pectin biosynthetic process4.31E-02
209GO:0010305: leaf vascular tissue pattern formation4.31E-02
210GO:0010182: sugar mediated signaling pathway4.31E-02
211GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway4.35E-02
212GO:0006396: RNA processing4.36E-02
213GO:0046777: protein autophosphorylation4.53E-02
214GO:0042752: regulation of circadian rhythm4.54E-02
215GO:0009646: response to absence of light4.54E-02
216GO:0048544: recognition of pollen4.54E-02
217GO:0007018: microtubule-based movement4.54E-02
218GO:0009749: response to glucose4.77E-02
219GO:0071554: cell wall organization or biogenesis5.00E-02
RankGO TermAdjusted P value
1GO:0010355: homogentisate farnesyltransferase activity0.00E+00
2GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
3GO:0052834: inositol monophosphate phosphatase activity0.00E+00
4GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
5GO:0010357: homogentisate solanesyltransferase activity0.00E+00
6GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
7GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
8GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
9GO:0045435: lycopene epsilon cyclase activity0.00E+00
10GO:0004401: histidinol-phosphatase activity0.00E+00
11GO:0046905: phytoene synthase activity0.00E+00
12GO:0008805: carbon-monoxide oxygenase activity1.03E-05
13GO:0001872: (1->3)-beta-D-glucan binding7.55E-05
14GO:0010347: L-galactose-1-phosphate phosphatase activity4.84E-04
15GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity4.84E-04
16GO:0005227: calcium activated cation channel activity4.84E-04
17GO:0042834: peptidoglycan binding4.84E-04
18GO:0008568: microtubule-severing ATPase activity4.84E-04
19GO:0019203: carbohydrate phosphatase activity4.84E-04
20GO:0004831: tyrosine-tRNA ligase activity4.84E-04
21GO:0005290: L-histidine transmembrane transporter activity4.84E-04
22GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity4.84E-04
23GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.84E-04
24GO:0004830: tryptophan-tRNA ligase activity4.84E-04
25GO:0051996: squalene synthase activity4.84E-04
26GO:0030570: pectate lyase activity4.87E-04
27GO:0003723: RNA binding1.02E-03
28GO:0005094: Rho GDP-dissociation inhibitor activity1.04E-03
29GO:0043425: bHLH transcription factor binding1.04E-03
30GO:0016415: octanoyltransferase activity1.04E-03
31GO:0004047: aminomethyltransferase activity1.04E-03
32GO:0004766: spermidine synthase activity1.04E-03
33GO:0052832: inositol monophosphate 3-phosphatase activity1.04E-03
34GO:0004829: threonine-tRNA ligase activity1.04E-03
35GO:0008934: inositol monophosphate 1-phosphatase activity1.04E-03
36GO:0052833: inositol monophosphate 4-phosphatase activity1.04E-03
37GO:0000064: L-ornithine transmembrane transporter activity1.04E-03
38GO:0004310: farnesyl-diphosphate farnesyltransferase activity1.04E-03
39GO:0009884: cytokinin receptor activity1.04E-03
40GO:0050017: L-3-cyanoalanine synthase activity1.04E-03
41GO:0017118: lipoyltransferase activity1.04E-03
42GO:0052692: raffinose alpha-galactosidase activity1.70E-03
43GO:0080054: low-affinity nitrate transmembrane transporter activity1.70E-03
44GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups1.70E-03
45GO:0045548: phenylalanine ammonia-lyase activity1.70E-03
46GO:0003913: DNA photolyase activity1.70E-03
47GO:0004148: dihydrolipoyl dehydrogenase activity1.70E-03
48GO:0004557: alpha-galactosidase activity1.70E-03
49GO:0005034: osmosensor activity1.70E-03
50GO:0030247: polysaccharide binding1.87E-03
51GO:0004519: endonuclease activity2.03E-03
52GO:0005096: GTPase activator activity2.27E-03
53GO:0015189: L-lysine transmembrane transporter activity2.47E-03
54GO:0043047: single-stranded telomeric DNA binding2.47E-03
55GO:0016149: translation release factor activity, codon specific2.47E-03
56GO:0015181: arginine transmembrane transporter activity2.47E-03
57GO:0009882: blue light photoreceptor activity2.47E-03
58GO:0043424: protein histidine kinase binding3.17E-03
59GO:0001053: plastid sigma factor activity3.32E-03
60GO:0010011: auxin binding3.32E-03
61GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed3.32E-03
62GO:0070628: proteasome binding3.32E-03
63GO:0016987: sigma factor activity3.32E-03
64GO:0010328: auxin influx transmembrane transporter activity3.32E-03
65GO:0019199: transmembrane receptor protein kinase activity3.32E-03
66GO:0070696: transmembrane receptor protein serine/threonine kinase binding4.26E-03
67GO:0008725: DNA-3-methyladenine glycosylase activity4.26E-03
68GO:0005471: ATP:ADP antiporter activity4.26E-03
69GO:0043621: protein self-association4.42E-03
70GO:0004812: aminoacyl-tRNA ligase activity4.92E-03
71GO:2001070: starch binding5.27E-03
72GO:0030983: mismatched DNA binding5.27E-03
73GO:0004332: fructose-bisphosphate aldolase activity5.27E-03
74GO:0004709: MAP kinase kinase kinase activity5.27E-03
75GO:0031593: polyubiquitin binding5.27E-03
76GO:0004124: cysteine synthase activity6.36E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity6.36E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity6.36E-03
79GO:0019900: kinase binding6.36E-03
80GO:0016762: xyloglucan:xyloglucosyl transferase activity7.10E-03
81GO:0042162: telomeric DNA binding7.52E-03
82GO:0009881: photoreceptor activity7.52E-03
83GO:0003684: damaged DNA binding8.62E-03
84GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds9.20E-03
85GO:0003747: translation release factor activity1.14E-02
86GO:0071949: FAD binding1.14E-02
87GO:0008138: protein tyrosine/serine/threonine phosphatase activity1.14E-02
88GO:0016798: hydrolase activity, acting on glycosyl bonds1.22E-02
89GO:0009672: auxin:proton symporter activity1.29E-02
90GO:0005515: protein binding1.32E-02
91GO:0016829: lyase activity1.36E-02
92GO:0004673: protein histidine kinase activity1.44E-02
93GO:0004805: trehalose-phosphatase activity1.44E-02
94GO:0004161: dimethylallyltranstransferase activity1.59E-02
95GO:0005089: Rho guanyl-nucleotide exchange factor activity1.59E-02
96GO:0015095: magnesium ion transmembrane transporter activity1.92E-02
97GO:0000155: phosphorelay sensor kinase activity1.92E-02
98GO:0005262: calcium channel activity1.92E-02
99GO:0003725: double-stranded RNA binding1.92E-02
100GO:0010329: auxin efflux transmembrane transporter activity1.92E-02
101GO:0008017: microtubule binding1.96E-02
102GO:0008266: poly(U) RNA binding2.09E-02
103GO:0008061: chitin binding2.27E-02
104GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.45E-02
105GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.45E-02
106GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.45E-02
107GO:0042802: identical protein binding2.50E-02
108GO:0051536: iron-sulfur cluster binding2.64E-02
109GO:0031418: L-ascorbic acid binding2.64E-02
110GO:0043130: ubiquitin binding2.64E-02
111GO:0047262: polygalacturonate 4-alpha-galacturonosyltransferase activity3.23E-02
112GO:0015171: amino acid transmembrane transporter activity3.31E-02
113GO:0008536: Ran GTPase binding4.31E-02
114GO:0016853: isomerase activity4.54E-02
115GO:0005355: glucose transmembrane transporter activity4.54E-02
116GO:0050662: coenzyme binding4.54E-02
117GO:0010181: FMN binding4.54E-02
RankGO TermAdjusted P value
1GO:0035452: extrinsic component of plastid membrane0.00E+00
2GO:0009537: proplastid0.00E+00
3GO:0009507: chloroplast2.23E-10
4GO:0009570: chloroplast stroma2.18E-04
5GO:0009986: cell surface4.90E-04
6GO:0005886: plasma membrane6.35E-04
7GO:0009513: etioplast1.04E-03
8GO:0005697: telomerase holoenzyme complex1.04E-03
9GO:0030529: intracellular ribonucleoprotein complex1.52E-03
10GO:0016605: PML body1.70E-03
11GO:0009509: chromoplast1.70E-03
12GO:0030139: endocytic vesicle1.70E-03
13GO:0032585: multivesicular body membrane2.47E-03
14GO:0032432: actin filament bundle2.47E-03
15GO:0031969: chloroplast membrane3.09E-03
16GO:0009532: plastid stroma3.49E-03
17GO:0009941: chloroplast envelope4.44E-03
18GO:0005655: nucleolar ribonuclease P complex6.36E-03
19GO:0046658: anchored component of plasma membrane6.66E-03
20GO:0042807: central vacuole7.52E-03
21GO:0009501: amyloplast8.76E-03
22GO:0000326: protein storage vacuole1.01E-02
23GO:0000784: nuclear chromosome, telomeric region1.01E-02
24GO:0005874: microtubule1.11E-02
25GO:0031225: anchored component of membrane1.27E-02
26GO:0016604: nuclear body1.29E-02
27GO:0005884: actin filament1.59E-02
28GO:0000311: plastid large ribosomal subunit1.75E-02
29GO:0009535: chloroplast thylakoid membrane1.78E-02
30GO:0005578: proteinaceous extracellular matrix1.92E-02
31GO:0009574: preprophase band1.92E-02
32GO:0030095: chloroplast photosystem II2.09E-02
33GO:0009654: photosystem II oxygen evolving complex2.83E-02
34GO:0005871: kinesin complex3.86E-02
35GO:0009706: chloroplast inner membrane4.24E-02
36GO:0019898: extrinsic component of membrane4.77E-02
37GO:0031965: nuclear membrane4.77E-02
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Gene type



Gene DE type