Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G25840

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0071000: response to magnetism0.00E+00
2GO:0009583: detection of light stimulus0.00E+00
3GO:0000372: Group I intron splicing0.00E+00
4GO:0043972: histone H3-K23 acetylation0.00E+00
5GO:0032212: positive regulation of telomere maintenance via telomerase0.00E+00
6GO:0006003: fructose 2,6-bisphosphate metabolic process0.00E+00
7GO:0033528: S-methylmethionine cycle0.00E+00
8GO:0006114: glycerol biosynthetic process0.00E+00
9GO:0032206: positive regulation of telomere maintenance0.00E+00
10GO:0006399: tRNA metabolic process0.00E+00
11GO:0044154: histone H3-K14 acetylation0.00E+00
12GO:0010081: regulation of inflorescence meristem growth0.00E+00
13GO:0006353: DNA-templated transcription, termination2.20E-05
14GO:0000373: Group II intron splicing4.26E-05
15GO:0010239: chloroplast mRNA processing6.74E-05
16GO:0010158: abaxial cell fate specification1.82E-04
17GO:0051510: regulation of unidimensional cell growth4.45E-04
18GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process4.53E-04
19GO:0009090: homoserine biosynthetic process4.53E-04
20GO:0043489: RNA stabilization4.53E-04
21GO:0043971: histone H3-K18 acetylation4.53E-04
22GO:0000012: single strand break repair4.53E-04
23GO:0043266: regulation of potassium ion transport4.53E-04
24GO:0010080: regulation of floral meristem growth4.53E-04
25GO:0019478: D-amino acid catabolic process4.53E-04
26GO:0072387: flavin adenine dinucleotide metabolic process4.53E-04
27GO:0043087: regulation of GTPase activity4.53E-04
28GO:2000021: regulation of ion homeostasis4.53E-04
29GO:0043609: regulation of carbon utilization4.53E-04
30GO:0000066: mitochondrial ornithine transport4.53E-04
31GO:0006177: GMP biosynthetic process4.53E-04
32GO:0034757: negative regulation of iron ion transport4.53E-04
33GO:0016117: carotenoid biosynthetic process5.32E-04
34GO:0009657: plastid organization6.77E-04
35GO:0071482: cellular response to light stimulus6.77E-04
36GO:0009451: RNA modification8.60E-04
37GO:0009793: embryo development ending in seed dormancy9.49E-04
38GO:0009086: methionine biosynthetic process9.56E-04
39GO:0080005: photosystem stoichiometry adjustment9.79E-04
40GO:0048255: mRNA stabilization9.79E-04
41GO:0010617: circadian regulation of calcium ion oscillation9.79E-04
42GO:0010271: regulation of chlorophyll catabolic process9.79E-04
43GO:0099402: plant organ development9.79E-04
44GO:0006435: threonyl-tRNA aminoacylation9.79E-04
45GO:0001736: establishment of planar polarity9.79E-04
46GO:0010343: singlet oxygen-mediated programmed cell death9.79E-04
47GO:1901529: positive regulation of anion channel activity9.79E-04
48GO:0045037: protein import into chloroplast stroma1.47E-03
49GO:0010582: floral meristem determinacy1.47E-03
50GO:0006000: fructose metabolic process1.59E-03
51GO:0010022: meristem determinacy1.59E-03
52GO:1901672: positive regulation of systemic acquired resistance1.59E-03
53GO:0006696: ergosterol biosynthetic process1.59E-03
54GO:0006617: SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition1.59E-03
55GO:0045910: negative regulation of DNA recombination1.59E-03
56GO:1902448: positive regulation of shade avoidance1.59E-03
57GO:0080117: secondary growth1.59E-03
58GO:0006094: gluconeogenesis1.67E-03
59GO:0009658: chloroplast organization1.78E-03
60GO:0090351: seedling development2.11E-03
61GO:0044211: CTP salvage2.31E-03
62GO:1901332: negative regulation of lateral root development2.31E-03
63GO:2000904: regulation of starch metabolic process2.31E-03
64GO:0042989: sequestering of actin monomers2.31E-03
65GO:2001141: regulation of RNA biosynthetic process2.31E-03
66GO:0009067: aspartate family amino acid biosynthetic process2.31E-03
67GO:0051513: regulation of monopolar cell growth2.31E-03
68GO:0009102: biotin biosynthetic process2.31E-03
69GO:0051639: actin filament network formation2.31E-03
70GO:0034059: response to anoxia2.31E-03
71GO:0009800: cinnamic acid biosynthetic process2.31E-03
72GO:0010306: rhamnogalacturonan II biosynthetic process2.31E-03
73GO:1902347: response to strigolactone3.10E-03
74GO:0044206: UMP salvage3.10E-03
75GO:0051781: positive regulation of cell division3.10E-03
76GO:0051764: actin crosslink formation3.10E-03
77GO:0051322: anaphase3.10E-03
78GO:0015846: polyamine transport3.10E-03
79GO:0030041: actin filament polymerization3.98E-03
80GO:0010117: photoprotection3.98E-03
81GO:0046283: anthocyanin-containing compound metabolic process3.98E-03
82GO:0010236: plastoquinone biosynthetic process3.98E-03
83GO:0045038: protein import into chloroplast thylakoid membrane3.98E-03
84GO:0031365: N-terminal protein amino acid modification3.98E-03
85GO:1902183: regulation of shoot apical meristem development3.98E-03
86GO:0016123: xanthophyll biosynthetic process3.98E-03
87GO:0080110: sporopollenin biosynthetic process3.98E-03
88GO:0048831: regulation of shoot system development4.92E-03
89GO:0016554: cytidine to uridine editing4.92E-03
90GO:0009920: cell plate formation involved in plant-type cell wall biogenesis4.92E-03
91GO:1901371: regulation of leaf morphogenesis4.92E-03
92GO:0006559: L-phenylalanine catabolic process4.92E-03
93GO:0006206: pyrimidine nucleobase metabolic process4.92E-03
94GO:0060918: auxin transport4.92E-03
95GO:0048868: pollen tube development5.20E-03
96GO:0009958: positive gravitropism5.20E-03
97GO:0010244: response to low fluence blue light stimulus by blue low-fluence system5.94E-03
98GO:0048509: regulation of meristem development5.94E-03
99GO:1901259: chloroplast rRNA processing5.94E-03
100GO:0009088: threonine biosynthetic process5.94E-03
101GO:0010310: regulation of hydrogen peroxide metabolic process5.94E-03
102GO:0042372: phylloquinone biosynthetic process5.94E-03
103GO:0048316: seed development6.67E-03
104GO:0007264: small GTPase mediated signal transduction6.87E-03
105GO:0010050: vegetative phase change7.03E-03
106GO:0006614: SRP-dependent cotranslational protein targeting to membrane7.03E-03
107GO:0015693: magnesium ion transport7.03E-03
108GO:0009610: response to symbiotic fungus7.03E-03
109GO:0006955: immune response7.03E-03
110GO:0009850: auxin metabolic process8.18E-03
111GO:0009704: de-etiolation8.18E-03
112GO:0042255: ribosome assembly8.18E-03
113GO:0070413: trehalose metabolism in response to stress8.18E-03
114GO:0045010: actin nucleation8.18E-03
115GO:0010492: maintenance of shoot apical meristem identity8.18E-03
116GO:0000105: histidine biosynthetic process8.18E-03
117GO:0048564: photosystem I assembly8.18E-03
118GO:0009827: plant-type cell wall modification9.38E-03
119GO:0032544: plastid translation9.38E-03
120GO:0044030: regulation of DNA methylation9.38E-03
121GO:0006002: fructose 6-phosphate metabolic process9.38E-03
122GO:0022900: electron transport chain9.38E-03
123GO:0019430: removal of superoxide radicals9.38E-03
124GO:0010206: photosystem II repair1.07E-02
125GO:0006098: pentose-phosphate shunt1.07E-02
126GO:2000024: regulation of leaf development1.07E-02
127GO:0048507: meristem development1.07E-02
128GO:0090305: nucleic acid phosphodiester bond hydrolysis1.07E-02
129GO:1900865: chloroplast RNA modification1.20E-02
130GO:1900426: positive regulation of defense response to bacterium1.20E-02
131GO:0009638: phototropism1.20E-02
132GO:0000723: telomere maintenance1.20E-02
133GO:0018298: protein-chromophore linkage1.22E-02
134GO:0000160: phosphorelay signal transduction system1.28E-02
135GO:0006535: cysteine biosynthetic process from serine1.34E-02
136GO:0048829: root cap development1.34E-02
137GO:0006298: mismatch repair1.34E-02
138GO:0006259: DNA metabolic process1.34E-02
139GO:0006265: DNA topological change1.48E-02
140GO:0009089: lysine biosynthetic process via diaminopimelate1.48E-02
141GO:0006352: DNA-templated transcription, initiation1.48E-02
142GO:0006415: translational termination1.48E-02
143GO:0009750: response to fructose1.48E-02
144GO:0048765: root hair cell differentiation1.48E-02
145GO:0009637: response to blue light1.55E-02
146GO:0006839: mitochondrial transport1.77E-02
147GO:0009785: blue light signaling pathway1.79E-02
148GO:0030036: actin cytoskeleton organization1.79E-02
149GO:0010075: regulation of meristem growth1.79E-02
150GO:0010207: photosystem II assembly1.95E-02
151GO:0010020: chloroplast fission1.95E-02
152GO:0006302: double-strand break repair1.95E-02
153GO:0010114: response to red light2.00E-02
154GO:0080188: RNA-directed DNA methylation2.12E-02
155GO:0030150: protein import into mitochondrial matrix2.46E-02
156GO:0051017: actin filament bundle assembly2.46E-02
157GO:0007010: cytoskeleton organization2.46E-02
158GO:0006289: nucleotide-excision repair2.46E-02
159GO:2000377: regulation of reactive oxygen species metabolic process2.46E-02
160GO:0005992: trehalose biosynthetic process2.46E-02
161GO:0019344: cysteine biosynthetic process2.46E-02
162GO:0009944: polarity specification of adaxial/abaxial axis2.46E-02
163GO:0010073: meristem maintenance2.64E-02
164GO:0009736: cytokinin-activated signaling pathway2.70E-02
165GO:0006364: rRNA processing2.70E-02
166GO:0003333: amino acid transmembrane transport2.82E-02
167GO:0016998: cell wall macromolecule catabolic process2.82E-02
168GO:0015992: proton transport2.82E-02
169GO:0006417: regulation of translation2.99E-02
170GO:0035428: hexose transmembrane transport3.01E-02
171GO:0006730: one-carbon metabolic process3.01E-02
172GO:0080092: regulation of pollen tube growth3.01E-02
173GO:0016226: iron-sulfur cluster assembly3.01E-02
174GO:0071215: cellular response to abscisic acid stimulus3.20E-02
175GO:0009831: plant-type cell wall modification involved in multidimensional cell growth3.20E-02
176GO:0006284: base-excision repair3.40E-02
177GO:0019722: calcium-mediated signaling3.40E-02
178GO:0010584: pollen exine formation3.40E-02
179GO:0070417: cellular response to cold3.60E-02
180GO:0080167: response to karrikin3.69E-02
181GO:0008033: tRNA processing3.81E-02
182GO:0034220: ion transmembrane transport3.81E-02
183GO:0010087: phloem or xylem histogenesis3.81E-02
184GO:0010118: stomatal movement3.81E-02
185GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway3.85E-02
186GO:0006396: RNA processing3.96E-02
187GO:0046777: protein autophosphorylation4.01E-02
188GO:0045489: pectin biosynthetic process4.01E-02
189GO:0010154: fruit development4.01E-02
190GO:0046323: glucose import4.01E-02
191GO:0010268: brassinosteroid homeostasis4.01E-02
192GO:0009416: response to light stimulus4.22E-02
193GO:0007018: microtubule-based movement4.23E-02
194GO:0042752: regulation of circadian rhythm4.23E-02
195GO:0007059: chromosome segregation4.23E-02
196GO:0009646: response to absence of light4.23E-02
197GO:0009749: response to glucose4.44E-02
198GO:0016132: brassinosteroid biosynthetic process4.66E-02
199GO:0032502: developmental process4.88E-02
RankGO TermAdjusted P value
1GO:0004331: fructose-2,6-bisphosphate 2-phosphatase activity0.00E+00
2GO:0019808: polyamine binding0.00E+00
3GO:0050613: delta14-sterol reductase activity0.00E+00
4GO:0003873: 6-phosphofructo-2-kinase activity0.00E+00
5GO:0008710: 8-amino-7-oxononanoate synthase activity0.00E+00
6GO:0004561: alpha-N-acetylglucosaminidase activity0.00E+00
7GO:0033818: beta-ketoacyl-acyl-carrier-protein synthase III activity0.00E+00
8GO:0046905: phytoene synthase activity0.00E+00
9GO:0010355: homogentisate farnesyltransferase activity0.00E+00
10GO:0016767: geranylgeranyl-diphosphate geranylgeranyltransferase activity0.00E+00
11GO:0005048: signal sequence binding0.00E+00
12GO:0043136: glycerol-3-phosphatase activity0.00E+00
13GO:0000121: glycerol-1-phosphatase activity0.00E+00
14GO:0010356: homogentisate geranylgeranyltransferase activity0.00E+00
15GO:0017005: 3'-tyrosyl-DNA phosphodiesterase activity0.00E+00
16GO:0010357: homogentisate solanesyltransferase activity0.00E+00
17GO:0004519: endonuclease activity4.49E-04
18GO:0042834: peptidoglycan binding4.53E-04
19GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity4.53E-04
20GO:0005290: L-histidine transmembrane transporter activity4.53E-04
21GO:0004612: phosphoenolpyruvate carboxykinase (ATP) activity4.53E-04
22GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity4.53E-04
23GO:0051996: squalene synthase activity4.53E-04
24GO:0052624: 2-phytyl-1,4-naphthoquinone methyltransferase activity4.53E-04
25GO:0003879: ATP phosphoribosyltransferase activity4.53E-04
26GO:0019843: rRNA binding4.64E-04
27GO:0003723: RNA binding7.02E-04
28GO:0004829: threonine-tRNA ligase activity9.79E-04
29GO:0000064: L-ornithine transmembrane transporter activity9.79E-04
30GO:0004412: homoserine dehydrogenase activity9.79E-04
31GO:0004310: farnesyl-diphosphate farnesyltransferase activity9.79E-04
32GO:0009884: cytokinin receptor activity9.79E-04
33GO:0050017: L-3-cyanoalanine synthase activity9.79E-04
34GO:0004326: tetrahydrofolylpolyglutamate synthase activity9.79E-04
35GO:0003938: IMP dehydrogenase activity9.79E-04
36GO:0008898: S-adenosylmethionine-homocysteine S-methyltransferase activity9.79E-04
37GO:0004047: aminomethyltransferase activity9.79E-04
38GO:0005089: Rho guanyl-nucleotide exchange factor activity1.28E-03
39GO:0003924: GTPase activity1.41E-03
40GO:0045548: phenylalanine ammonia-lyase activity1.59E-03
41GO:0003913: DNA photolyase activity1.59E-03
42GO:0004148: dihydrolipoyl dehydrogenase activity1.59E-03
43GO:0016805: dipeptidase activity1.59E-03
44GO:0005034: osmosensor activity1.59E-03
45GO:0004315: 3-oxoacyl-[acyl-carrier-protein] synthase activity1.59E-03
46GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups1.59E-03
47GO:0005096: GTPase activator activity2.01E-03
48GO:0009678: hydrogen-translocating pyrophosphatase activity2.31E-03
49GO:0016149: translation release factor activity, codon specific2.31E-03
50GO:0017172: cysteine dioxygenase activity2.31E-03
51GO:0015181: arginine transmembrane transporter activity2.31E-03
52GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor2.31E-03
53GO:0009882: blue light photoreceptor activity2.31E-03
54GO:0004300: enoyl-CoA hydratase activity2.31E-03
55GO:0001872: (1->3)-beta-D-glucan binding2.31E-03
56GO:0015189: L-lysine transmembrane transporter activity2.31E-03
57GO:0004072: aspartate kinase activity2.31E-03
58GO:0043047: single-stranded telomeric DNA binding2.31E-03
59GO:0016987: sigma factor activity3.10E-03
60GO:0010328: auxin influx transmembrane transporter activity3.10E-03
61GO:0010385: double-stranded methylated DNA binding3.10E-03
62GO:0001053: plastid sigma factor activity3.10E-03
63GO:0004845: uracil phosphoribosyltransferase activity3.10E-03
64GO:0010011: auxin binding3.10E-03
65GO:0070628: proteasome binding3.10E-03
66GO:0030570: pectate lyase activity3.78E-03
67GO:0005525: GTP binding3.96E-03
68GO:0003785: actin monomer binding3.98E-03
69GO:0005471: ATP:ADP antiporter activity3.98E-03
70GO:0070696: transmembrane receptor protein serine/threonine kinase binding3.98E-03
71GO:0008725: DNA-3-methyladenine glycosylase activity3.98E-03
72GO:0004784: superoxide dismutase activity4.92E-03
73GO:2001070: starch binding4.92E-03
74GO:0030983: mismatched DNA binding4.92E-03
75GO:0004332: fructose-bisphosphate aldolase activity4.92E-03
76GO:0031593: polyubiquitin binding4.92E-03
77GO:0004849: uridine kinase activity5.94E-03
78GO:0004656: procollagen-proline 4-dioxygenase activity5.94E-03
79GO:0019900: kinase binding5.94E-03
80GO:0004124: cysteine synthase activity5.94E-03
81GO:0004518: nuclease activity6.87E-03
82GO:0009881: photoreceptor activity7.03E-03
83GO:0008235: metalloexopeptidase activity7.03E-03
84GO:0042162: telomeric DNA binding7.03E-03
85GO:0004427: inorganic diphosphatase activity7.03E-03
86GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds7.58E-03
87GO:0003684: damaged DNA binding7.80E-03
88GO:0043022: ribosome binding8.18E-03
89GO:0008312: 7S RNA binding8.18E-03
90GO:0003918: DNA topoisomerase type II (ATP-hydrolyzing) activity9.38E-03
91GO:0071949: FAD binding1.07E-02
92GO:0003747: translation release factor activity1.07E-02
93GO:0004673: protein histidine kinase activity1.34E-02
94GO:0004805: trehalose-phosphatase activity1.34E-02
95GO:0004177: aminopeptidase activity1.48E-02
96GO:0004161: dimethylallyltranstransferase activity1.48E-02
97GO:0015266: protein channel activity1.79E-02
98GO:0015095: magnesium ion transmembrane transporter activity1.79E-02
99GO:0031072: heat shock protein binding1.79E-02
100GO:0000155: phosphorelay sensor kinase activity1.79E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.95E-02
102GO:0008266: poly(U) RNA binding1.95E-02
103GO:0043621: protein self-association2.17E-02
104GO:0042802: identical protein binding2.21E-02
105GO:0102336: 3-oxo-arachidoyl-CoA synthase activity2.29E-02
106GO:0102337: 3-oxo-cerotoyl-CoA synthase activity2.29E-02
107GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity2.29E-02
108GO:0031418: L-ascorbic acid binding2.46E-02
109GO:0043130: ubiquitin binding2.46E-02
110GO:0051087: chaperone binding2.64E-02
111GO:0043424: protein histidine kinase binding2.64E-02
112GO:0003690: double-stranded DNA binding2.80E-02
113GO:0003727: single-stranded RNA binding3.40E-02
114GO:0004402: histone acetyltransferase activity3.81E-02
115GO:0004527: exonuclease activity4.01E-02
116GO:0008536: Ran GTPase binding4.01E-02
117GO:0005355: glucose transmembrane transporter activity4.23E-02
118GO:0050662: coenzyme binding4.23E-02
119GO:0010181: FMN binding4.23E-02
120GO:0019901: protein kinase binding4.44E-02
121GO:0016762: xyloglucan:xyloglucosyl transferase activity4.66E-02
RankGO TermAdjusted P value
1GO:0009537: proplastid0.00E+00
2GO:0042597: periplasmic space0.00E+00
3GO:0035452: extrinsic component of plastid membrane0.00E+00
4GO:0009507: chloroplast1.39E-16
5GO:0009570: chloroplast stroma3.72E-06
6GO:0005697: telomerase holoenzyme complex9.79E-04
7GO:0080085: signal recognition particle, chloroplast targeting9.79E-04
8GO:0009513: etioplast9.79E-04
9GO:0030529: intracellular ribonucleoprotein complex1.34E-03
10GO:0009509: chromoplast1.59E-03
11GO:0016605: PML body1.59E-03
12GO:0009574: preprophase band1.67E-03
13GO:0005578: proteinaceous extracellular matrix1.67E-03
14GO:0032432: actin filament bundle2.31E-03
15GO:0042646: plastid nucleoid2.31E-03
16GO:0009330: DNA topoisomerase complex (ATP-hydrolyzing)3.10E-03
17GO:0031209: SCAR complex4.92E-03
18GO:0042807: central vacuole7.03E-03
19GO:0009986: cell surface7.03E-03
20GO:0031305: integral component of mitochondrial inner membrane8.18E-03
21GO:0009501: amyloplast8.18E-03
22GO:0009295: nucleoid8.30E-03
23GO:0005786: signal recognition particle, endoplasmic reticulum targeting9.38E-03
24GO:0000326: protein storage vacuole9.38E-03
25GO:0000784: nuclear chromosome, telomeric region9.38E-03
26GO:0031969: chloroplast membrane1.01E-02
27GO:0042644: chloroplast nucleoid1.07E-02
28GO:0016604: nuclear body1.20E-02
29GO:0016324: apical plasma membrane1.34E-02
30GO:0005759: mitochondrial matrix1.45E-02
31GO:0005884: actin filament1.48E-02
32GO:0000311: plastid large ribosomal subunit1.63E-02
33GO:0005938: cell cortex1.79E-02
34GO:0016602: CCAAT-binding factor complex1.79E-02
35GO:0009579: thylakoid1.91E-02
36GO:0030176: integral component of endoplasmic reticulum membrane2.12E-02
37GO:0046658: anchored component of plasma membrane2.32E-02
38GO:0009536: plastid2.55E-02
39GO:0042651: thylakoid membrane2.64E-02
40GO:0009505: plant-type cell wall2.66E-02
41GO:0009532: plastid stroma2.82E-02
42GO:0031225: anchored component of membrane2.98E-02
43GO:0015629: actin cytoskeleton3.20E-02
44GO:0009535: chloroplast thylakoid membrane3.37E-02
45GO:0005744: mitochondrial inner membrane presequence translocase complex3.40E-02
46GO:0009941: chloroplast envelope3.50E-02
47GO:0005871: kinesin complex3.60E-02
48GO:0009706: chloroplast inner membrane3.84E-02
49GO:0005768: endosome3.85E-02
50GO:0031965: nuclear membrane4.44E-02
51GO:0010287: plastoglobule4.55E-02
52GO:0005623: cell4.92E-02
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Gene type



Gene DE type