co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25620

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006511: ubiquitin-dependent protein catabolic process	1.62E-06
2	GO:0048827: phyllome development	3.75E-06
3	GO:0009651: response to salt stress	1.55E-05
4	GO:1900424: regulation of defense response to bacterium	3.37E-05
5	GO:0035266: meristem growth	3.37E-05
6	GO:0007292: female gamete generation	3.37E-05
7	GO:0009156: ribonucleoside monophosphate biosynthetic process	8.48E-05
8	GO:0035335: peptidyl-tyrosine dephosphorylation	8.48E-05
9	GO:0031124: mRNA 3'-end processing	8.48E-05
10	GO:0051788: response to misfolded protein	8.48E-05
11	GO:0060968: regulation of gene silencing	1.47E-04
12	GO:0046686: response to cadmium ion	1.70E-04
13	GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process	1.96E-04
14	GO:0048577: negative regulation of short-day photoperiodism, flowering	2.18E-04
15	GO:0071786: endoplasmic reticulum tubular network organization	2.18E-04
16	GO:0030163: protein catabolic process	2.19E-04
17	GO:0009165: nucleotide biosynthetic process	2.95E-04
18	GO:0033320: UDP-D-xylose biosynthetic process	2.95E-04
19	GO:0033356: UDP-L-arabinose metabolic process	2.95E-04
20	GO:0047484: regulation of response to osmotic stress	4.63E-04
21	GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly	4.63E-04
22	GO:0006388: tRNA splicing, via endonucleolytic cleavage and ligation	4.63E-04
23	GO:0048232: male gamete generation	4.63E-04
24	GO:0043248: proteasome assembly	4.63E-04
25	GO:0042732: D-xylose metabolic process	4.63E-04
26	GO:0009612: response to mechanical stimulus	5.53E-04
27	GO:0010078: maintenance of root meristem identity	7.44E-04
28	GO:0051603: proteolysis involved in cellular protein catabolic process	8.13E-04
29	GO:0006379: mRNA cleavage	9.49E-04
30	GO:0043067: regulation of programmed cell death	1.06E-03
31	GO:0048829: root cap development	1.17E-03
32	GO:0072593: reactive oxygen species metabolic process	1.28E-03
33	GO:0006378: mRNA polyadenylation	1.28E-03
34	GO:0010015: root morphogenesis	1.28E-03
35	GO:0006913: nucleocytoplasmic transport	1.28E-03
36	GO:0009933: meristem structural organization	1.65E-03
37	GO:0090351: seedling development	1.78E-03
38	GO:0009225: nucleotide-sugar metabolic process	1.78E-03
39	GO:0034976: response to endoplasmic reticulum stress	1.91E-03
40	GO:0009116: nucleoside metabolic process	2.05E-03
41	GO:0000027: ribosomal large subunit assembly	2.05E-03
42	GO:0030433: ubiquitin-dependent ERAD pathway	2.48E-03
43	GO:0080092: regulation of pollen tube growth	2.48E-03
44	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.94E-03
45	GO:0006979: response to oxidative stress	3.25E-03
46	GO:0010183: pollen tube guidance	3.59E-03
47	GO:0000302: response to reactive oxygen species	3.76E-03
48	GO:0045454: cell redox homeostasis	4.21E-03
49	GO:0030244: cellulose biosynthetic process	5.79E-03
50	GO:0009832: plant-type cell wall biogenesis	5.99E-03
51	GO:0010311: lateral root formation	5.99E-03
52	GO:0006499: N-terminal protein myristoylation	6.20E-03
53	GO:0010043: response to zinc ion	6.40E-03
54	GO:0009910: negative regulation of flower development	6.40E-03
55	GO:0045087: innate immune response	6.82E-03
56	GO:0016051: carbohydrate biosynthetic process	6.82E-03
57	GO:0034599: cellular response to oxidative stress	7.04E-03
58	GO:0009926: auxin polar transport	8.14E-03
59	GO:0009908: flower development	8.30E-03
60	GO:0009735: response to cytokinin	8.40E-03
61	GO:0009965: leaf morphogenesis	8.82E-03
62	GO:0000165: MAPK cascade	9.30E-03
63	GO:0048367: shoot system development	1.15E-02
64	GO:0048316: seed development	1.15E-02
65	GO:0006457: protein folding	1.19E-02
66	GO:0009553: embryo sac development	1.26E-02
67	GO:0042744: hydrogen peroxide catabolic process	1.65E-02
68	GO:0009790: embryo development	1.68E-02
69	GO:0071555: cell wall organization	1.87E-02
70	GO:0010228: vegetative to reproductive phase transition of meristem	1.96E-02
71	GO:0009617: response to bacterium	2.15E-02
72	GO:0045944: positive regulation of transcription from RNA polymerase II promoter	2.45E-02
73	GO:0042254: ribosome biogenesis	2.62E-02
74	GO:0009860: pollen tube growth	2.72E-02
75	GO:0009408: response to heat	3.97E-02
76	GO:0006397: mRNA processing	4.10E-02
77	GO:0048364: root development	4.10E-02

Rank	GO Term	Adjusted P value
1	GO:0004298: threonine-type endopeptidase activity	1.15E-06
2	GO:0004725: protein tyrosine phosphatase activity	6.26E-05
3	GO:0051731: polynucleotide 5'-hydroxyl-kinase activity	8.48E-05
4	GO:0004749: ribose phosphate diphosphokinase activity	2.18E-04
5	GO:0008233: peptidase activity	3.92E-04
6	GO:0031593: polyubiquitin binding	4.63E-04
7	GO:0016688: L-ascorbate peroxidase activity	4.63E-04
8	GO:0036402: proteasome-activating ATPase activity	4.63E-04
9	GO:0048040: UDP-glucuronate decarboxylase activity	4.63E-04
10	GO:0004130: cytochrome-c peroxidase activity	4.63E-04
11	GO:0070403: NAD+ binding	5.53E-04
12	GO:0017025: TBP-class protein binding	1.78E-03
13	GO:0004190: aspartic-type endopeptidase activity	1.78E-03
14	GO:0043130: ubiquitin binding	2.05E-03
15	GO:0043424: protein histidine kinase binding	2.19E-03
16	GO:0003756: protein disulfide isomerase activity	2.78E-03
17	GO:0047134: protein-disulfide reductase activity	2.94E-03
18	GO:0004791: thioredoxin-disulfide reductase activity	3.42E-03
19	GO:0008237: metallopeptidase activity	4.46E-03
20	GO:0004722: protein serine/threonine phosphatase activity	4.61E-03
21	GO:0008375: acetylglucosaminyltransferase activity	5.21E-03
22	GO:0004721: phosphoprotein phosphatase activity	5.40E-03
23	GO:0005096: GTPase activator activity	5.99E-03
24	GO:0016887: ATPase activity	8.02E-03
25	GO:0004650: polygalacturonase activity	1.21E-02
26	GO:0030246: carbohydrate binding	1.24E-02
27	GO:0051082: unfolded protein binding	1.28E-02
28	GO:0016829: lyase activity	1.59E-02
29	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.65E-02
30	GO:0000287: magnesium ion binding	2.55E-02
31	GO:0004601: peroxidase activity	2.58E-02
32	GO:0061630: ubiquitin protein ligase activity	3.12E-02
33	GO:0016787: hydrolase activity	4.00E-02

Rank	GO Term	Adjusted P value
1	GO:0019867: outer membrane	0.00E+00
2	GO:0000327: lytic vacuole within protein storage vacuole	0.00E+00
3	GO:0000502: proteasome complex	2.19E-12
4	GO:0005839: proteasome core complex	1.15E-06
5	GO:0008541: proteasome regulatory particle, lid subcomplex	3.02E-05
6	GO:0005838: proteasome regulatory particle	1.47E-04
7	GO:0071782: endoplasmic reticulum tubular network	2.18E-04
8	GO:0005849: mRNA cleavage factor complex	2.18E-04
9	GO:0005788: endoplasmic reticulum lumen	2.97E-04
10	GO:0031597: cytosolic proteasome complex	5.53E-04
11	GO:0031595: nuclear proteasome complex	6.47E-04
12	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	7.44E-04
13	GO:0000326: protein storage vacuole	8.45E-04
14	GO:0019773: proteasome core complex, alpha-subunit complex	8.45E-04
15	GO:0008540: proteasome regulatory particle, base subcomplex	1.06E-03
16	GO:0031307: integral component of mitochondrial outer membrane	1.40E-03
17	GO:0005783: endoplasmic reticulum	2.52E-03
18	GO:0031965: nuclear membrane	3.59E-03
19	GO:0005829: cytosol	5.37E-03
20	GO:0005773: vacuole	6.62E-03
21	GO:0005819: spindle	7.25E-03
22	GO:0005635: nuclear envelope	1.05E-02
23	GO:0005634: nucleus	1.09E-02
24	GO:0009543: chloroplast thylakoid lumen	1.51E-02
25	GO:0005774: vacuolar membrane	1.55E-02
26	GO:0009524: phragmoplast	1.56E-02
27	GO:0005840: ribosome	1.96E-02
28	GO:0080008: Cul4-RING E3 ubiquitin ligase complex	2.76E-02
29	GO:0005789: endoplasmic reticulum membrane	2.86E-02