Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G25460

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0072722: response to amitrole0.00E+00
2GO:0006903: vesicle targeting0.00E+00
3GO:0006216: cytidine catabolic process0.00E+00
4GO:0006858: extracellular transport0.00E+00
5GO:0046680: response to DDT0.00E+00
6GO:2000117: negative regulation of cysteine-type endopeptidase activity0.00E+00
7GO:0010499: proteasomal ubiquitin-independent protein catabolic process0.00E+00
8GO:0010398: xylogalacturonan metabolic process0.00E+00
9GO:0016102: diterpenoid biosynthetic process0.00E+00
10GO:0046686: response to cadmium ion5.19E-06
11GO:0006564: L-serine biosynthetic process6.05E-05
12GO:0006102: isocitrate metabolic process2.06E-04
13GO:0035266: meristem growth2.32E-04
14GO:0007292: female gamete generation2.32E-04
15GO:0010421: hydrogen peroxide-mediated programmed cell death2.32E-04
16GO:0000032: cell wall mannoprotein biosynthetic process2.32E-04
17GO:0019478: D-amino acid catabolic process2.32E-04
18GO:0006680: glucosylceramide catabolic process2.32E-04
19GO:0042964: thioredoxin reduction2.32E-04
20GO:1900384: regulation of flavonol biosynthetic process2.32E-04
21GO:0006511: ubiquitin-dependent protein catabolic process2.79E-04
22GO:0030163: protein catabolic process2.83E-04
23GO:0071422: succinate transmembrane transport5.15E-04
24GO:0009805: coumarin biosynthetic process5.15E-04
25GO:0006672: ceramide metabolic process5.15E-04
26GO:0051788: response to misfolded protein5.15E-04
27GO:0080026: response to indolebutyric acid5.15E-04
28GO:0006996: organelle organization5.15E-04
29GO:0015709: thiosulfate transport5.15E-04
30GO:0055046: microgametogenesis6.45E-04
31GO:0006807: nitrogen compound metabolic process6.45E-04
32GO:0006099: tricarboxylic acid cycle7.81E-04
33GO:0006517: protein deglycosylation8.37E-04
34GO:0010272: response to silver ion8.37E-04
35GO:0033591: response to L-ascorbic acid8.37E-04
36GO:0060968: regulation of gene silencing8.37E-04
37GO:0009062: fatty acid catabolic process8.37E-04
38GO:0006556: S-adenosylmethionine biosynthetic process8.37E-04
39GO:0010253: UDP-rhamnose biosynthetic process8.37E-04
40GO:0040009: regulation of growth rate8.37E-04
41GO:0009617: response to bacterium1.08E-03
42GO:0009636: response to toxic substance1.17E-03
43GO:0015031: protein transport1.18E-03
44GO:0009298: GDP-mannose biosynthetic process1.19E-03
45GO:0015729: oxaloacetate transport1.19E-03
46GO:0006612: protein targeting to membrane1.19E-03
47GO:0006893: Golgi to plasma membrane transport1.19E-03
48GO:0080024: indolebutyric acid metabolic process1.19E-03
49GO:0030433: ubiquitin-dependent ERAD pathway1.31E-03
50GO:0051603: proteolysis involved in cellular protein catabolic process1.53E-03
51GO:0009561: megagametogenesis1.55E-03
52GO:1902584: positive regulation of response to water deprivation1.59E-03
53GO:0006096: glycolytic process1.81E-03
54GO:0045927: positive regulation of growth2.03E-03
55GO:0000304: response to singlet oxygen2.03E-03
56GO:0071423: malate transmembrane transport2.03E-03
57GO:0098719: sodium ion import across plasma membrane2.03E-03
58GO:0048827: phyllome development2.50E-03
59GO:0048232: male gamete generation2.50E-03
60GO:0006555: methionine metabolic process2.50E-03
61GO:0043248: proteasome assembly2.50E-03
62GO:0042176: regulation of protein catabolic process2.50E-03
63GO:0010315: auxin efflux2.50E-03
64GO:0055114: oxidation-reduction process2.50E-03
65GO:0035435: phosphate ion transmembrane transport2.50E-03
66GO:0019243: methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione2.50E-03
67GO:0009972: cytidine deamination2.50E-03
68GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly2.50E-03
69GO:0019509: L-methionine salvage from methylthioadenosine3.00E-03
70GO:0034389: lipid particle organization3.00E-03
71GO:0009082: branched-chain amino acid biosynthetic process3.00E-03
72GO:0009099: valine biosynthetic process3.00E-03
73GO:0009554: megasporogenesis3.00E-03
74GO:0080113: regulation of seed growth3.00E-03
75GO:0009058: biosynthetic process3.26E-03
76GO:0009615: response to virus3.46E-03
77GO:0080027: response to herbivore3.54E-03
78GO:0006744: ubiquinone biosynthetic process3.54E-03
79GO:0080186: developmental vegetative growth3.54E-03
80GO:0071669: plant-type cell wall organization or biogenesis3.54E-03
81GO:0008272: sulfate transport3.54E-03
82GO:0050829: defense response to Gram-negative bacterium3.54E-03
83GO:0009751: response to salicylic acid3.92E-03
84GO:0006491: N-glycan processing4.10E-03
85GO:0010078: maintenance of root meristem identity4.10E-03
86GO:0009699: phenylpropanoid biosynthetic process4.70E-03
87GO:0006002: fructose 6-phosphate metabolic process4.70E-03
88GO:0060321: acceptance of pollen4.70E-03
89GO:0019430: removal of superoxide radicals4.70E-03
90GO:0010120: camalexin biosynthetic process4.70E-03
91GO:0009097: isoleucine biosynthetic process4.70E-03
92GO:0010311: lateral root formation4.73E-03
93GO:0009407: toxin catabolic process4.97E-03
94GO:0010043: response to zinc ion5.21E-03
95GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process5.30E-03
96GO:0046685: response to arsenic-containing substance5.32E-03
97GO:0009821: alkaloid biosynthetic process5.32E-03
98GO:0006754: ATP biosynthetic process5.32E-03
99GO:0045087: innate immune response5.71E-03
100GO:0043067: regulation of programmed cell death5.97E-03
101GO:0009098: leucine biosynthetic process5.97E-03
102GO:0048354: mucilage biosynthetic process involved in seed coat development5.97E-03
103GO:0051453: regulation of intracellular pH5.97E-03
104GO:0051555: flavonol biosynthetic process6.65E-03
105GO:0006032: chitin catabolic process6.65E-03
106GO:0009688: abscisic acid biosynthetic process6.65E-03
107GO:0043069: negative regulation of programmed cell death6.65E-03
108GO:0048829: root cap development6.65E-03
109GO:0010015: root morphogenesis7.35E-03
110GO:0009682: induced systemic resistance7.35E-03
111GO:0006415: translational termination7.35E-03
112GO:0000272: polysaccharide catabolic process7.35E-03
113GO:0006790: sulfur compound metabolic process8.08E-03
114GO:0006890: retrograde vesicle-mediated transport, Golgi to ER8.08E-03
115GO:0009846: pollen germination9.24E-03
116GO:0009933: meristem structural organization9.62E-03
117GO:0009651: response to salt stress9.68E-03
118GO:0010053: root epidermal cell differentiation1.04E-02
119GO:0009225: nucleotide-sugar metabolic process1.04E-02
120GO:0007031: peroxisome organization1.04E-02
121GO:0019853: L-ascorbic acid biosynthetic process1.04E-02
122GO:0090351: seedling development1.04E-02
123GO:0046854: phosphatidylinositol phosphorylation1.04E-02
124GO:0000162: tryptophan biosynthetic process1.13E-02
125GO:0034976: response to endoplasmic reticulum stress1.13E-02
126GO:0009620: response to fungus1.29E-02
127GO:0008299: isoprenoid biosynthetic process1.30E-02
128GO:0006886: intracellular protein transport1.38E-02
129GO:0019915: lipid storage1.39E-02
130GO:0006366: transcription from RNA polymerase II promoter1.39E-02
131GO:0016998: cell wall macromolecule catabolic process1.39E-02
132GO:0015992: proton transport1.39E-02
133GO:0019748: secondary metabolic process1.48E-02
134GO:0030245: cellulose catabolic process1.48E-02
135GO:0006730: one-carbon metabolic process1.48E-02
136GO:0009693: ethylene biosynthetic process1.57E-02
137GO:0042127: regulation of cell proliferation1.67E-02
138GO:0042147: retrograde transport, endosome to Golgi1.77E-02
139GO:0015991: ATP hydrolysis coupled proton transport1.87E-02
140GO:0042631: cellular response to water deprivation1.87E-02
141GO:0045489: pectin biosynthetic process1.97E-02
142GO:0009646: response to absence of light2.07E-02
143GO:0006814: sodium ion transport2.07E-02
144GO:0009851: auxin biosynthetic process2.18E-02
145GO:0006635: fatty acid beta-oxidation2.29E-02
146GO:0010150: leaf senescence2.46E-02
147GO:0071281: cellular response to iron ion2.51E-02
148GO:0009567: double fertilization forming a zygote and endosperm2.62E-02
149GO:0019760: glucosinolate metabolic process2.62E-02
150GO:0010252: auxin homeostasis2.62E-02
151GO:0006464: cellular protein modification process2.62E-02
152GO:0006914: autophagy2.62E-02
153GO:0006904: vesicle docking involved in exocytosis2.74E-02
154GO:0071805: potassium ion transmembrane transport2.74E-02
155GO:0009627: systemic acquired resistance3.22E-02
156GO:0048573: photoperiodism, flowering3.34E-02
157GO:0016049: cell growth3.47E-02
158GO:0008219: cell death3.59E-02
159GO:0048767: root hair elongation3.72E-02
160GO:0006499: N-terminal protein myristoylation3.85E-02
161GO:0007568: aging3.98E-02
162GO:0006839: mitochondrial transport4.67E-02
163GO:0006887: exocytosis4.81E-02
164GO:0006897: endocytosis4.81E-02
165GO:0016192: vesicle-mediated transport4.93E-02
RankGO TermAdjusted P value
1GO:0070577: lysine-acetylated histone binding0.00E+00
2GO:0047720: indoleacetaldoxime dehydratase activity0.00E+00
3GO:0080013: (E,E)-geranyllinalool synthase activity0.00E+00
4GO:0052861: glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group0.00E+00
5GO:0047844: deoxycytidine deaminase activity0.00E+00
6GO:0001729: ceramide kinase activity0.00E+00
7GO:0051499: D-aminoacyl-tRNA deacylase activity0.00E+00
8GO:0016504: peptidase activator activity0.00E+00
9GO:0102983: xylogalacturonan beta-1,3-xylosyltransferase activity0.00E+00
10GO:0004617: phosphoglycerate dehydrogenase activity2.51E-06
11GO:0004449: isocitrate dehydrogenase (NAD+) activity2.08E-05
12GO:0004298: threonine-type endopeptidase activity8.49E-05
13GO:0004069: L-aspartate:2-oxoglutarate aminotransferase activity8.88E-05
14GO:0080130: L-phenylalanine:2-oxoglutarate aminotransferase activity8.88E-05
15GO:0004425: indole-3-glycerol-phosphate synthase activity2.32E-04
16GO:0070401: NADP+ binding2.32E-04
17GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity2.32E-04
18GO:0048037: cofactor binding2.32E-04
19GO:0004476: mannose-6-phosphate isomerase activity2.32E-04
20GO:0004348: glucosylceramidase activity2.32E-04
21GO:0019786: Atg8-specific protease activity2.32E-04
22GO:0016229: steroid dehydrogenase activity2.32E-04
23GO:0000287: magnesium ion binding2.92E-04
24GO:0004743: pyruvate kinase activity3.67E-04
25GO:0030955: potassium ion binding3.67E-04
26GO:0010297: heteropolysaccharide binding5.15E-04
27GO:0008460: dTDP-glucose 4,6-dehydratase activity5.15E-04
28GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity5.15E-04
29GO:0010280: UDP-L-rhamnose synthase activity5.15E-04
30GO:0050347: trans-octaprenyltranstransferase activity5.15E-04
31GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity5.15E-04
32GO:1990585: hydroxyproline O-arabinosyltransferase activity5.15E-04
33GO:0004775: succinate-CoA ligase (ADP-forming) activity5.15E-04
34GO:0019779: Atg8 activating enzyme activity5.15E-04
35GO:0050377: UDP-glucose 4,6-dehydratase activity5.15E-04
36GO:0015117: thiosulfate transmembrane transporter activity5.15E-04
37GO:1901677: phosphate transmembrane transporter activity5.15E-04
38GO:0004776: succinate-CoA ligase (GDP-forming) activity5.15E-04
39GO:0052739: phosphatidylserine 1-acylhydrolase activity5.15E-04
40GO:0004478: methionine adenosyltransferase activity8.37E-04
41GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity8.37E-04
42GO:0005310: dicarboxylic acid transmembrane transporter activity8.37E-04
43GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity8.37E-04
44GO:0015141: succinate transmembrane transporter activity8.37E-04
45GO:0017077: oxidative phosphorylation uncoupler activity1.19E-03
46GO:0052655: L-valine transaminase activity1.19E-03
47GO:0015131: oxaloacetate transmembrane transporter activity1.19E-03
48GO:0004416: hydroxyacylglutathione hydrolase activity1.19E-03
49GO:0016149: translation release factor activity, codon specific1.19E-03
50GO:0016656: monodehydroascorbate reductase (NADH) activity1.19E-03
51GO:0052656: L-isoleucine transaminase activity1.19E-03
52GO:0004165: dodecenoyl-CoA delta-isomerase activity1.19E-03
53GO:0052654: L-leucine transaminase activity1.19E-03
54GO:0051287: NAD binding1.28E-03
55GO:0004084: branched-chain-amino-acid transaminase activity1.59E-03
56GO:0070628: proteasome binding1.59E-03
57GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity1.59E-03
58GO:0004031: aldehyde oxidase activity1.59E-03
59GO:0050302: indole-3-acetaldehyde oxidase activity1.59E-03
60GO:0019776: Atg8 ligase activity1.59E-03
61GO:0004659: prenyltransferase activity1.59E-03
62GO:0016887: ATPase activity1.93E-03
63GO:0008374: O-acyltransferase activity2.03E-03
64GO:0004040: amidase activity2.03E-03
65GO:0035252: UDP-xylosyltransferase activity2.50E-03
66GO:0036402: proteasome-activating ATPase activity2.50E-03
67GO:0004126: cytidine deaminase activity3.00E-03
68GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.00E-03
69GO:0003950: NAD+ ADP-ribosyltransferase activity3.00E-03
70GO:0016597: amino acid binding3.26E-03
71GO:0003872: 6-phosphofructokinase activity3.54E-03
72GO:0015140: malate transmembrane transporter activity3.54E-03
73GO:0008320: protein transmembrane transporter activity3.54E-03
74GO:0043295: glutathione binding3.54E-03
75GO:0016798: hydrolase activity, acting on glycosyl bonds4.07E-03
76GO:0004033: aldo-keto reductase (NADP) activity4.10E-03
77GO:0008970: phosphatidylcholine 1-acylhydrolase activity4.70E-03
78GO:0003951: NAD+ kinase activity4.70E-03
79GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding5.21E-03
80GO:0008553: hydrogen-exporting ATPase activity, phosphorylative mechanism5.32E-03
81GO:0003747: translation release factor activity5.32E-03
82GO:0003746: translation elongation factor activity5.71E-03
83GO:0045309: protein phosphorylated amino acid binding5.97E-03
84GO:0009672: auxin:proton symporter activity5.97E-03
85GO:0016844: strictosidine synthase activity5.97E-03
86GO:0030234: enzyme regulator activity6.65E-03
87GO:0004568: chitinase activity6.65E-03
88GO:0004364: glutathione transferase activity7.07E-03
89GO:0004161: dimethylallyltranstransferase activity7.35E-03
90GO:0015386: potassium:proton antiporter activity7.35E-03
91GO:0019904: protein domain specific binding7.35E-03
92GO:0015116: sulfate transmembrane transporter activity8.08E-03
93GO:0005506: iron ion binding8.20E-03
94GO:0010329: auxin efflux transmembrane transporter activity8.84E-03
95GO:0050660: flavin adenine dinucleotide binding9.64E-03
96GO:0003824: catalytic activity9.91E-03
97GO:0008233: peptidase activity1.03E-02
98GO:0017025: TBP-class protein binding1.04E-02
99GO:0008061: chitin binding1.04E-02
100GO:0031625: ubiquitin protein ligase binding1.10E-02
101GO:0001046: core promoter sequence-specific DNA binding1.21E-02
102GO:0010333: terpene synthase activity1.39E-02
103GO:0008810: cellulase activity1.57E-02
104GO:0003756: protein disulfide isomerase activity1.67E-02
105GO:0046872: metal ion binding1.86E-02
106GO:0001085: RNA polymerase II transcription factor binding1.97E-02
107GO:0030170: pyridoxal phosphate binding1.97E-02
108GO:0005199: structural constituent of cell wall1.97E-02
109GO:0004791: thioredoxin-disulfide reductase activity2.07E-02
110GO:0016853: isomerase activity2.07E-02
111GO:0008565: protein transporter activity2.13E-02
112GO:0004518: nuclease activity2.40E-02
113GO:0015385: sodium:proton antiporter activity2.51E-02
114GO:0008237: metallopeptidase activity2.74E-02
115GO:0051213: dioxygenase activity2.98E-02
116GO:0008375: acetylglucosaminyltransferase activity3.22E-02
117GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity3.59E-02
118GO:0004601: peroxidase activity3.79E-02
119GO:0016614: oxidoreductase activity, acting on CH-OH group of donors3.98E-02
120GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors4.25E-02
121GO:0004712: protein serine/threonine/tyrosine kinase activity4.53E-02
122GO:0061630: ubiquitin protein ligase activity4.93E-02
RankGO TermAdjusted P value
1GO:0000502: proteasome complex3.37E-08
2GO:0005839: proteasome core complex2.74E-06
3GO:0005829: cytosol4.18E-06
4GO:0008541: proteasome regulatory particle, lid subcomplex4.97E-04
5GO:0030130: clathrin coat of trans-Golgi network vesicle8.37E-04
6GO:0030132: clathrin coat of coated pit8.37E-04
7GO:0009530: primary cell wall8.37E-04
8GO:0005775: vacuolar lumen1.19E-03
9GO:0005776: autophagosome1.59E-03
10GO:0005945: 6-phosphofructokinase complex2.03E-03
11GO:0005886: plasma membrane2.05E-03
12GO:0030904: retromer complex2.50E-03
13GO:0032580: Golgi cisterna membrane2.90E-03
14GO:0031597: cytosolic proteasome complex3.00E-03
15GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane3.54E-03
16GO:0031595: nuclear proteasome complex3.54E-03
17GO:0000421: autophagosome membrane4.10E-03
18GO:0031982: vesicle4.10E-03
19GO:0009707: chloroplast outer membrane4.50E-03
20GO:0019773: proteasome core complex, alpha-subunit complex4.70E-03
21GO:0005811: lipid particle4.70E-03
22GO:0031090: organelle membrane5.32E-03
23GO:0005737: cytoplasm5.45E-03
24GO:0008540: proteasome regulatory particle, base subcomplex5.97E-03
25GO:0005783: endoplasmic reticulum7.93E-03
26GO:0005794: Golgi apparatus8.65E-03
27GO:0009536: plastid1.20E-02
28GO:0031410: cytoplasmic vesicle1.48E-02
29GO:0005744: mitochondrial inner membrane presequence translocase complex1.67E-02
30GO:0009506: plasmodesma1.75E-02
31GO:0016592: mediator complex2.40E-02
32GO:0000145: exocyst2.40E-02
33GO:0071944: cell periphery2.51E-02
34GO:0005774: vacuolar membrane2.72E-02
35GO:0005778: peroxisomal membrane2.74E-02
36GO:0005788: endoplasmic reticulum lumen3.10E-02
37GO:0005667: transcription factor complex3.22E-02
38GO:0016020: membrane3.26E-02
39GO:0005618: cell wall3.49E-02
40GO:0005777: peroxisome4.19E-02
41GO:0031902: late endosome membrane4.81E-02
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Gene type



Gene DE type