co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G25220

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0009926: auxin polar transport	5.19E-05
2	GO:0043087: regulation of GTPase activity	1.69E-04
3	GO:0051013: microtubule severing	1.69E-04
4	GO:0034757: negative regulation of iron ion transport	1.69E-04
5	GO:0048829: root cap development	2.75E-04
6	GO:0045037: protein import into chloroplast stroma	3.66E-04
7	GO:0010271: regulation of chlorophyll catabolic process	3.83E-04
8	GO:0001736: establishment of planar polarity	3.83E-04
9	GO:0009786: regulation of asymmetric cell division	3.83E-04
10	GO:0010024: phytochromobilin biosynthetic process	3.83E-04
11	GO:0010569: regulation of double-strand break repair via homologous recombination	3.83E-04
12	GO:0009825: multidimensional cell growth	5.27E-04
13	GO:0080117: secondary growth	6.25E-04
14	GO:0080055: low-affinity nitrate transport	6.25E-04
15	GO:0030029: actin filament-based process	6.25E-04
16	GO:0009734: auxin-activated signaling pathway	7.43E-04
17	GO:0051513: regulation of monopolar cell growth	8.93E-04
18	GO:0051639: actin filament network formation	8.93E-04
19	GO:0034059: response to anoxia	8.93E-04
20	GO:0009956: radial pattern formation	1.18E-03
21	GO:0051764: actin crosslink formation	1.18E-03
22	GO:0015846: polyamine transport	1.18E-03
23	GO:0009733: response to auxin	1.25E-03
24	GO:0009958: positive gravitropism	1.26E-03
25	GO:0010236: plastoquinone biosynthetic process	1.50E-03
26	GO:0009107: lipoate biosynthetic process	1.50E-03
27	GO:1902183: regulation of shoot apical meristem development	1.50E-03
28	GO:0010158: abaxial cell fate specification	1.50E-03
29	GO:0010583: response to cyclopentenone	1.65E-03
30	GO:0048831: regulation of shoot system development	1.85E-03
31	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.85E-03
32	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.85E-03
33	GO:0009942: longitudinal axis specification	2.22E-03
34	GO:0048509: regulation of meristem development	2.22E-03
35	GO:0010019: chloroplast-nucleus signaling pathway	2.22E-03
36	GO:0048444: floral organ morphogenesis	2.22E-03
37	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	2.22E-03
38	GO:0010444: guard mother cell differentiation	2.61E-03
39	GO:0009610: response to symbiotic fungus	2.61E-03
40	GO:0000082: G1/S transition of mitotic cell cycle	2.61E-03
41	GO:0046620: regulation of organ growth	3.02E-03
42	GO:0000160: phosphorelay signal transduction system	3.03E-03
43	GO:0010311: lateral root formation	3.03E-03
44	GO:0007389: pattern specification process	3.46E-03
45	GO:0007186: G-protein coupled receptor signaling pathway	3.46E-03
46	GO:0009657: plastid organization	3.46E-03
47	GO:2000024: regulation of leaf development	3.91E-03
48	GO:0000373: Group II intron splicing	3.91E-03
49	GO:0016571: histone methylation	4.38E-03
50	GO:0016573: histone acetylation	4.38E-03
51	GO:0005982: starch metabolic process	4.38E-03
52	GO:0006779: porphyrin-containing compound biosynthetic process	4.38E-03
53	GO:0042761: very long-chain fatty acid biosynthetic process	4.38E-03
54	GO:0006535: cysteine biosynthetic process from serine	4.87E-03
55	GO:0006782: protoporphyrinogen IX biosynthetic process	4.87E-03
56	GO:0019538: protein metabolic process	4.87E-03
57	GO:0009965: leaf morphogenesis	5.27E-03
58	GO:0048765: root hair cell differentiation	5.38E-03
59	GO:0005983: starch catabolic process	5.91E-03
60	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	6.19E-03
61	GO:0009736: cytokinin-activated signaling pathway	6.32E-03
62	GO:0010207: photosystem II assembly	7.02E-03
63	GO:0010540: basipetal auxin transport	7.02E-03
64	GO:0009266: response to temperature stimulus	7.02E-03
65	GO:0009934: regulation of meristem structural organization	7.02E-03
66	GO:0010020: chloroplast fission	7.02E-03
67	GO:0009933: meristem structural organization	7.02E-03
68	GO:0080188: RNA-directed DNA methylation	7.60E-03
69	GO:0010025: wax biosynthetic process	8.20E-03
70	GO:0051017: actin filament bundle assembly	8.81E-03
71	GO:0006289: nucleotide-excision repair	8.81E-03
72	GO:0019344: cysteine biosynthetic process	8.81E-03
73	GO:0006338: chromatin remodeling	8.81E-03
74	GO:0009944: polarity specification of adaxial/abaxial axis	8.81E-03
75	GO:0051302: regulation of cell division	9.44E-03
76	GO:0043622: cortical microtubule organization	9.44E-03
77	GO:0051726: regulation of cell cycle	9.55E-03
78	GO:0003333: amino acid transmembrane transport	1.01E-02
79	GO:0016226: iron-sulfur cluster assembly	1.08E-02
80	GO:0035428: hexose transmembrane transport	1.08E-02
81	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	1.14E-02
82	GO:0071215: cellular response to abscisic acid stimulus	1.14E-02
83	GO:0010091: trichome branching	1.21E-02
84	GO:0042127: regulation of cell proliferation	1.21E-02
85	GO:0006284: base-excision repair	1.21E-02
86	GO:0016117: carotenoid biosynthetic process	1.28E-02
87	GO:0070417: cellular response to cold	1.28E-02
88	GO:0010087: phloem or xylem histogenesis	1.36E-02
89	GO:0000226: microtubule cytoskeleton organization	1.36E-02
90	GO:0071555: cell wall organization	1.40E-02
91	GO:0046323: glucose import	1.43E-02
92	GO:0009741: response to brassinosteroid	1.43E-02
93	GO:0010154: fruit development	1.43E-02
94	GO:0010305: leaf vascular tissue pattern formation	1.43E-02
95	GO:0007018: microtubule-based movement	1.51E-02
96	GO:0045490: pectin catabolic process	1.56E-02
97	GO:0006464: cellular protein modification process	1.90E-02
98	GO:0009828: plant-type cell wall loosening	1.90E-02
99	GO:0010252: auxin homeostasis	1.90E-02
100	GO:0051607: defense response to virus	2.07E-02
101	GO:0009911: positive regulation of flower development	2.16E-02
102	GO:0010029: regulation of seed germination	2.24E-02
103	GO:0010411: xyloglucan metabolic process	2.42E-02
104	GO:0015995: chlorophyll biosynthetic process	2.42E-02
105	GO:0006970: response to osmotic stress	2.61E-02
106	GO:0018298: protein-chromophore linkage	2.61E-02
107	GO:0009832: plant-type cell wall biogenesis	2.70E-02
108	GO:0007568: aging	2.89E-02
109	GO:0009910: negative regulation of flower development	2.89E-02
110	GO:0006865: amino acid transport	2.99E-02
111	GO:0008283: cell proliferation	3.69E-02
112	GO:0009744: response to sucrose	3.69E-02
113	GO:0051707: response to other organism	3.69E-02
114	GO:0042546: cell wall biogenesis	3.80E-02
115	GO:0009636: response to toxic substance	4.01E-02
116	GO:0009664: plant-type cell wall organization	4.34E-02
117	GO:0006281: DNA repair	4.41E-02
118	GO:0009809: lignin biosynthetic process	4.57E-02
119	GO:0048364: root development	4.60E-02
120	GO:0006857: oligopeptide transport	4.79E-02
121	GO:0009909: regulation of flower development	4.91E-02
122	GO:0006417: regulation of translation	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
2	GO:0019808: polyamine binding	0.00E+00
3	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
4	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
5	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
6	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
7	GO:0008568: microtubule-severing ATPase activity	1.69E-04
8	GO:0019203: carbohydrate phosphatase activity	1.69E-04
9	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	1.69E-04
10	GO:0050017: L-3-cyanoalanine synthase activity	3.83E-04
11	GO:0017118: lipoyltransferase activity	3.83E-04
12	GO:0016415: octanoyltransferase activity	3.83E-04
13	GO:0004047: aminomethyltransferase activity	3.83E-04
14	GO:0008805: carbon-monoxide oxygenase activity	3.83E-04
15	GO:0009884: cytokinin receptor activity	3.83E-04
16	GO:0005034: osmosensor activity	6.25E-04
17	GO:0052692: raffinose alpha-galactosidase activity	6.25E-04
18	GO:0080054: low-affinity nitrate transmembrane transporter activity	6.25E-04
19	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	6.25E-04
20	GO:0003913: DNA photolyase activity	6.25E-04
21	GO:0004557: alpha-galactosidase activity	6.25E-04
22	GO:0043424: protein histidine kinase binding	7.14E-04
23	GO:0001872: (1->3)-beta-D-glucan binding	8.93E-04
24	GO:0004742: dihydrolipoyllysine-residue acetyltransferase activity	8.93E-04
25	GO:0030570: pectate lyase activity	9.28E-04
26	GO:0070628: proteasome binding	1.18E-03
27	GO:0010011: auxin binding	1.18E-03
28	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	1.18E-03
29	GO:0010328: auxin influx transmembrane transporter activity	1.18E-03
30	GO:0019199: transmembrane receptor protein kinase activity	1.18E-03
31	GO:0005471: ATP:ADP antiporter activity	1.50E-03
32	GO:0008725: DNA-3-methyladenine glycosylase activity	1.50E-03
33	GO:0031593: polyubiquitin binding	1.85E-03
34	GO:0019900: kinase binding	2.22E-03
35	GO:0004124: cysteine synthase activity	2.22E-03
36	GO:0016621: cinnamoyl-CoA reductase activity	2.61E-03
37	GO:0009881: photoreceptor activity	2.61E-03
38	GO:0030247: polysaccharide binding	2.61E-03
39	GO:0005096: GTPase activator activity	3.03E-03
40	GO:0005515: protein binding	3.90E-03
41	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	3.91E-03
42	GO:0009672: auxin:proton symporter activity	4.38E-03
43	GO:0004673: protein histidine kinase activity	4.87E-03
44	GO:0043621: protein self-association	5.08E-03
45	GO:0004161: dimethylallyltranstransferase activity	5.38E-03
46	GO:0000155: phosphorelay sensor kinase activity	6.46E-03
47	GO:0010329: auxin efflux transmembrane transporter activity	6.46E-03
48	GO:0003725: double-stranded RNA binding	6.46E-03
49	GO:0043130: ubiquitin binding	8.81E-03
50	GO:0016829: lyase activity	1.22E-02
51	GO:0008565: protein transporter activity	1.35E-02
52	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	1.43E-02
53	GO:0005355: glucose transmembrane transporter activity	1.51E-02
54	GO:0050662: coenzyme binding	1.51E-02
55	GO:0016853: isomerase activity	1.51E-02
56	GO:0010181: FMN binding	1.51E-02
57	GO:0019901: protein kinase binding	1.58E-02
58	GO:0008017: microtubule binding	1.63E-02
59	GO:0016762: xyloglucan:xyloglucosyl transferase activity	1.66E-02
60	GO:0000156: phosphorelay response regulator activity	1.82E-02
61	GO:0051015: actin filament binding	1.82E-02
62	GO:0003684: damaged DNA binding	1.90E-02
63	GO:0005200: structural constituent of cytoskeleton	1.99E-02
64	GO:0042802: identical protein binding	1.99E-02
65	GO:0016798: hydrolase activity, acting on glycosyl bonds	2.42E-02
66	GO:0016740: transferase activity	2.59E-02
67	GO:0004693: cyclin-dependent protein serine/threonine kinase activity	2.79E-02
68	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	2.85E-02
69	GO:0050897: cobalt ion binding	2.89E-02
70	GO:0004871: signal transducer activity	3.76E-02
71	GO:0035091: phosphatidylinositol binding	3.91E-02
72	GO:0015293: symporter activity	4.01E-02
73	GO:0003690: double-stranded DNA binding	4.68E-02
74	GO:0003777: microtubule motor activity	4.91E-02
75	GO:0015171: amino acid transmembrane transporter activity	4.91E-02

Rank	GO Term	Adjusted P value
1	GO:0035452: extrinsic component of plastid membrane	0.00E+00
2	GO:0042597: periplasmic space	0.00E+00
3	GO:0009986: cell surface	9.92E-05
4	GO:0030139: endocytic vesicle	6.25E-04
5	GO:0032585: multivesicular body membrane	8.93E-04
6	GO:0032432: actin filament bundle	8.93E-04
7	GO:0009941: chloroplast envelope	8.94E-04
8	GO:0009507: chloroplast	1.13E-03
9	GO:0005655: nucleolar ribonuclease P complex	2.22E-03
10	GO:0005886: plasma membrane	3.88E-03
11	GO:0005884: actin filament	5.38E-03
12	GO:0009574: preprophase band	6.46E-03
13	GO:0005578: proteinaceous extracellular matrix	6.46E-03
14	GO:0016602: CCAAT-binding factor complex	6.46E-03
15	GO:0009706: chloroplast inner membrane	9.00E-03
16	GO:0031225: anchored component of membrane	9.47E-03
17	GO:0009532: plastid stroma	1.01E-02
18	GO:0005623: cell	1.16E-02
19	GO:0005871: kinesin complex	1.28E-02
20	GO:0009570: chloroplast stroma	1.52E-02
21	GO:0031965: nuclear membrane	1.58E-02
22	GO:0009536: plastid	1.91E-02
23	GO:0009505: plant-type cell wall	1.97E-02
24	GO:0046658: anchored component of plasma membrane	2.07E-02
25	GO:0030529: intracellular ribonucleoprotein complex	2.16E-02
26	GO:0009534: chloroplast thylakoid	2.55E-02
27	GO:0009707: chloroplast outer membrane	2.61E-02
28	GO:0005874: microtubule	2.90E-02
29	GO:0031969: chloroplast membrane	3.00E-02