GO Enrichment Analysis of Co-expressed Genes with
AT2G25110
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0035266: meristem growth | 2.41E-05 |
| 2 | GO:0007292: female gamete generation | 2.41E-05 |
| 3 | GO:0035352: NAD transmembrane transport | 2.41E-05 |
| 4 | GO:0043687: post-translational protein modification | 2.41E-05 |
| 5 | GO:0030433: ubiquitin-dependent ERAD pathway | 6.06E-05 |
| 6 | GO:0043132: NAD transport | 6.16E-05 |
| 7 | GO:0035335: peptidyl-tyrosine dephosphorylation | 6.16E-05 |
| 8 | GO:0051788: response to misfolded protein | 6.16E-05 |
| 9 | GO:0060968: regulation of gene silencing | 1.09E-04 |
| 10 | GO:0071786: endoplasmic reticulum tubular network organization | 1.62E-04 |
| 11 | GO:0070676: intralumenal vesicle formation | 1.62E-04 |
| 12 | GO:0006515: misfolded or incompletely synthesized protein catabolic process | 1.62E-04 |
| 13 | GO:0072334: UDP-galactose transmembrane transport | 1.62E-04 |
| 14 | GO:0010971: positive regulation of G2/M transition of mitotic cell cycle | 1.62E-04 |
| 15 | GO:0033320: UDP-D-xylose biosynthetic process | 2.21E-04 |
| 16 | GO:0033356: UDP-L-arabinose metabolic process | 2.21E-04 |
| 17 | GO:0018279: protein N-linked glycosylation via asparagine | 2.84E-04 |
| 18 | GO:0045899: positive regulation of RNA polymerase II transcriptional preinitiation complex assembly | 3.51E-04 |
| 19 | GO:0048827: phyllome development | 3.51E-04 |
| 20 | GO:0048232: male gamete generation | 3.51E-04 |
| 21 | GO:0043248: proteasome assembly | 3.51E-04 |
| 22 | GO:0042732: D-xylose metabolic process | 3.51E-04 |
| 23 | GO:0009612: response to mechanical stimulus | 4.20E-04 |
| 24 | GO:0006744: ubiquinone biosynthetic process | 4.92E-04 |
| 25 | GO:0000338: protein deneddylation | 4.92E-04 |
| 26 | GO:0010078: maintenance of root meristem identity | 5.68E-04 |
| 27 | GO:0010100: negative regulation of photomorphogenesis | 6.45E-04 |
| 28 | GO:0030968: endoplasmic reticulum unfolded protein response | 6.45E-04 |
| 29 | GO:0015780: nucleotide-sugar transport | 7.25E-04 |
| 30 | GO:0048829: root cap development | 8.92E-04 |
| 31 | GO:0010015: root morphogenesis | 9.78E-04 |
| 32 | GO:0072593: reactive oxygen species metabolic process | 9.78E-04 |
| 33 | GO:0043085: positive regulation of catalytic activity | 9.78E-04 |
| 34 | GO:0009933: meristem structural organization | 1.25E-03 |
| 35 | GO:0007034: vacuolar transport | 1.25E-03 |
| 36 | GO:0090351: seedling development | 1.35E-03 |
| 37 | GO:0009225: nucleotide-sugar metabolic process | 1.35E-03 |
| 38 | GO:0000027: ribosomal large subunit assembly | 1.55E-03 |
| 39 | GO:0006338: chromatin remodeling | 1.55E-03 |
| 40 | GO:0008299: isoprenoid biosynthetic process | 1.65E-03 |
| 41 | GO:0007005: mitochondrion organization | 1.87E-03 |
| 42 | GO:0019722: calcium-mediated signaling | 2.10E-03 |
| 43 | GO:0016192: vesicle-mediated transport | 2.44E-03 |
| 44 | GO:0000302: response to reactive oxygen species | 2.82E-03 |
| 45 | GO:0030244: cellulose biosynthetic process | 4.34E-03 |
| 46 | GO:0009832: plant-type cell wall biogenesis | 4.49E-03 |
| 47 | GO:0010311: lateral root formation | 4.49E-03 |
| 48 | GO:0006499: N-terminal protein myristoylation | 4.64E-03 |
| 49 | GO:0045087: innate immune response | 5.11E-03 |
| 50 | GO:0034599: cellular response to oxidative stress | 5.26E-03 |
| 51 | GO:0006839: mitochondrial transport | 5.59E-03 |
| 52 | GO:0009926: auxin polar transport | 6.08E-03 |
| 53 | GO:0009640: photomorphogenesis | 6.08E-03 |
| 54 | GO:0000209: protein polyubiquitination | 6.25E-03 |
| 55 | GO:0008643: carbohydrate transport | 6.42E-03 |
| 56 | GO:0009965: leaf morphogenesis | 6.59E-03 |
| 57 | GO:0042787: protein ubiquitination involved in ubiquitin-dependent protein catabolic process | 6.94E-03 |
| 58 | GO:0009846: pollen germination | 7.11E-03 |
| 59 | GO:0009585: red, far-red light phototransduction | 7.47E-03 |
| 60 | GO:0006508: proteolysis | 7.74E-03 |
| 61 | GO:0048367: shoot system development | 8.59E-03 |
| 62 | GO:0016569: covalent chromatin modification | 9.16E-03 |
| 63 | GO:0009553: embryo sac development | 9.36E-03 |
| 64 | GO:0042744: hydrogen peroxide catabolic process | 1.23E-02 |
| 65 | GO:0009790: embryo development | 1.25E-02 |
| 66 | GO:0043161: proteasome-mediated ubiquitin-dependent protein catabolic process | 1.52E-02 |
| 67 | GO:0015031: protein transport | 1.55E-02 |
| 68 | GO:0009617: response to bacterium | 1.59E-02 |
| 69 | GO:0046686: response to cadmium ion | 1.91E-02 |
| 70 | GO:0007275: multicellular organism development | 2.41E-02 |
| 71 | GO:0006886: intracellular protein transport | 2.59E-02 |
| 72 | GO:0032259: methylation | 2.86E-02 |
| 73 | GO:0016042: lipid catabolic process | 2.89E-02 |
| 74 | GO:0009408: response to heat | 2.95E-02 |
| 75 | GO:0048364: root development | 3.04E-02 |
| 76 | GO:0009735: response to cytokinin | 4.16E-02 |
| 77 | GO:0009555: pollen development | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0019211: phosphatase activator activity | 0.00E+00 |
| 2 | GO:1990381: ubiquitin-specific protease binding | 2.41E-05 |
| 3 | GO:0019784: NEDD8-specific protease activity | 2.41E-05 |
| 4 | GO:0004190: aspartic-type endopeptidase activity | 3.35E-05 |
| 5 | GO:0051724: NAD transporter activity | 6.16E-05 |
| 6 | GO:0050347: trans-octaprenyltranstransferase activity | 6.16E-05 |
| 7 | GO:0052924: all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity | 6.16E-05 |
| 8 | GO:0070361: mitochondrial light strand promoter anti-sense binding | 6.16E-05 |
| 9 | GO:0004576: oligosaccharyl transferase activity | 2.21E-04 |
| 10 | GO:1904264: ubiquitin protein ligase activity involved in ERAD pathway | 2.21E-04 |
| 11 | GO:0004659: prenyltransferase activity | 2.21E-04 |
| 12 | GO:0005459: UDP-galactose transmembrane transporter activity | 2.84E-04 |
| 13 | GO:0004579: dolichyl-diphosphooligosaccharide-protein glycotransferase activity | 2.84E-04 |
| 14 | GO:0016688: L-ascorbate peroxidase activity | 3.51E-04 |
| 15 | GO:0036402: proteasome-activating ATPase activity | 3.51E-04 |
| 16 | GO:0048040: UDP-glucuronate decarboxylase activity | 3.51E-04 |
| 17 | GO:0004130: cytochrome-c peroxidase activity | 3.51E-04 |
| 18 | GO:0031593: polyubiquitin binding | 3.51E-04 |
| 19 | GO:0070403: NAD+ binding | 4.20E-04 |
| 20 | GO:0008320: protein transmembrane transporter activity | 4.92E-04 |
| 21 | GO:0005338: nucleotide-sugar transmembrane transporter activity | 4.92E-04 |
| 22 | GO:0022857: transmembrane transporter activity | 6.95E-04 |
| 23 | GO:0004161: dimethylallyltranstransferase activity | 9.78E-04 |
| 24 | GO:0015297: antiporter activity | 1.18E-03 |
| 25 | GO:0017025: TBP-class protein binding | 1.35E-03 |
| 26 | GO:0004725: protein tyrosine phosphatase activity | 1.45E-03 |
| 27 | GO:0043130: ubiquitin binding | 1.55E-03 |
| 28 | GO:0004176: ATP-dependent peptidase activity | 1.76E-03 |
| 29 | GO:0004402: histone acetyltransferase activity | 2.33E-03 |
| 30 | GO:0008236: serine-type peptidase activity | 4.20E-03 |
| 31 | GO:0016887: ATPase activity | 5.26E-03 |
| 32 | GO:0045735: nutrient reservoir activity | 8.40E-03 |
| 33 | GO:0051082: unfolded protein binding | 9.56E-03 |
| 34 | GO:0004252: serine-type endopeptidase activity | 1.20E-02 |
| 35 | GO:0008168: methyltransferase activity | 1.86E-02 |
| 36 | GO:0004601: peroxidase activity | 1.92E-02 |
| 37 | GO:0008233: peptidase activity | 2.20E-02 |
| 38 | GO:0016787: hydrolase activity | 2.62E-02 |
| 39 | GO:0004722: protein serine/threonine phosphatase activity | 2.71E-02 |
| 40 | GO:0000166: nucleotide binding | 4.43E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 5.95E-06 |
| 2 | GO:0000836: Hrd1p ubiquitin ligase complex | 2.41E-05 |
| 3 | GO:0044322: endoplasmic reticulum quality control compartment | 2.41E-05 |
| 4 | GO:0005783: endoplasmic reticulum | 3.62E-05 |
| 5 | GO:0030134: ER to Golgi transport vesicle | 6.16E-05 |
| 6 | GO:0071782: endoplasmic reticulum tubular network | 1.62E-04 |
| 7 | GO:0036513: Derlin-1 retrotranslocation complex | 1.62E-04 |
| 8 | GO:0030660: Golgi-associated vesicle membrane | 2.21E-04 |
| 9 | GO:0071556: integral component of lumenal side of endoplasmic reticulum membrane | 2.21E-04 |
| 10 | GO:0008250: oligosaccharyltransferase complex | 2.84E-04 |
| 11 | GO:0031597: cytosolic proteasome complex | 4.20E-04 |
| 12 | GO:0000815: ESCRT III complex | 4.20E-04 |
| 13 | GO:0031595: nuclear proteasome complex | 4.92E-04 |
| 14 | GO:0000502: proteasome complex | 5.25E-04 |
| 15 | GO:0005789: endoplasmic reticulum membrane | 5.27E-04 |
| 16 | GO:0008180: COP9 signalosome | 7.25E-04 |
| 17 | GO:0008540: proteasome regulatory particle, base subcomplex | 8.07E-04 |
| 18 | GO:0005765: lysosomal membrane | 9.78E-04 |
| 19 | GO:0043234: protein complex | 1.45E-03 |
| 20 | GO:0032580: Golgi cisterna membrane | 3.22E-03 |
| 21 | GO:0005794: Golgi apparatus | 6.10E-03 |
| 22 | GO:0010008: endosome membrane | 8.59E-03 |
| 23 | GO:0005759: mitochondrial matrix | 1.31E-02 |
| 24 | GO:0005773: vacuole | 1.55E-02 |
| 25 | GO:0005829: cytosol | 1.67E-02 |
| 26 | GO:0080008: Cul4-RING E3 ubiquitin ligase complex | 2.04E-02 |
| 27 | GO:0016021: integral component of membrane | 2.48E-02 |
| 28 | GO:0005743: mitochondrial inner membrane | 2.80E-02 |
| 29 | GO:0005886: plasma membrane | 2.97E-02 |
| 30 | GO:0016020: membrane | 3.93E-02 |
| 31 | GO:0005774: vacuolar membrane | 4.23E-02 |