co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G24285

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0072722: response to amitrole	0.00E+00
2	GO:0071985: multivesicular body sorting pathway	0.00E+00
3	GO:0046680: response to DDT	0.00E+00
4	GO:0002084: protein depalmitoylation	0.00E+00
5	GO:0010499: proteasomal ubiquitin-independent protein catabolic process	0.00E+00
6	GO:0010053: root epidermal cell differentiation	7.30E-06
7	GO:0010421: hydrogen peroxide-mediated programmed cell death	1.04E-04
8	GO:0000032: cell wall mannoprotein biosynthetic process	1.04E-04
9	GO:0042964: thioredoxin reduction	1.04E-04
10	GO:1900384: regulation of flavonol biosynthetic process	1.04E-04
11	GO:0009805: coumarin biosynthetic process	2.44E-04
12	GO:0015709: thiosulfate transport	2.44E-04
13	GO:0071422: succinate transmembrane transport	2.44E-04
14	GO:0010272: response to silver ion	4.05E-04
15	GO:0033591: response to L-ascorbic acid	4.05E-04
16	GO:0006556: S-adenosylmethionine biosynthetic process	4.05E-04
17	GO:0072661: protein targeting to plasma membrane	4.05E-04
18	GO:0006517: protein deglycosylation	4.05E-04
19	GO:0016192: vesicle-mediated transport	4.41E-04
20	GO:0015729: oxaloacetate transport	5.82E-04
21	GO:0009298: GDP-mannose biosynthetic process	5.82E-04
22	GO:0070534: protein K63-linked ubiquitination	7.73E-04
23	GO:1902584: positive regulation of response to water deprivation	7.73E-04
24	GO:0010363: regulation of plant-type hypersensitive response	7.73E-04
25	GO:0033356: UDP-L-arabinose metabolic process	7.73E-04
26	GO:0030163: protein catabolic process	9.28E-04
27	GO:0045927: positive regulation of growth	9.77E-04
28	GO:0071423: malate transmembrane transport	9.77E-04
29	GO:0009823: cytokinin catabolic process	9.77E-04
30	GO:0006555: methionine metabolic process	1.19E-03
31	GO:0042176: regulation of protein catabolic process	1.19E-03
32	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	1.19E-03
33	GO:0035435: phosphate ion transmembrane transport	1.19E-03
34	GO:0006301: postreplication repair	1.19E-03
35	GO:0019509: L-methionine salvage from methylthioadenosine	1.43E-03
36	GO:0034389: lipid particle organization	1.43E-03
37	GO:0009554: megasporogenesis	1.43E-03
38	GO:0080186: developmental vegetative growth	1.67E-03
39	GO:0006614: SRP-dependent cotranslational protein targeting to membrane	1.67E-03
40	GO:0071669: plant-type cell wall organization or biogenesis	1.67E-03
41	GO:0008272: sulfate transport	1.67E-03
42	GO:0050829: defense response to Gram-negative bacterium	1.67E-03
43	GO:0006491: N-glycan processing	1.93E-03
44	GO:0006605: protein targeting	1.93E-03
45	GO:0006102: isocitrate metabolic process	1.93E-03
46	GO:0009699: phenylpropanoid biosynthetic process	2.21E-03
47	GO:0006002: fructose 6-phosphate metabolic process	2.21E-03
48	GO:0019430: removal of superoxide radicals	2.21E-03
49	GO:0046685: response to arsenic-containing substance	2.49E-03
50	GO:0009056: catabolic process	2.49E-03
51	GO:0046686: response to cadmium ion	2.56E-03
52	GO:0006511: ubiquitin-dependent protein catabolic process	2.78E-03
53	GO:0000103: sulfate assimilation	3.10E-03
54	GO:0006032: chitin catabolic process	3.10E-03
55	GO:0009688: abscisic acid biosynthetic process	3.10E-03
56	GO:0006886: intracellular protein transport	3.33E-03
57	GO:0000272: polysaccharide catabolic process	3.42E-03
58	GO:0006417: regulation of translation	3.62E-03
59	GO:0006790: sulfur compound metabolic process	3.75E-03
60	GO:0016925: protein sumoylation	3.75E-03
61	GO:0010102: lateral root morphogenesis	4.09E-03
62	GO:0007033: vacuole organization	4.80E-03
63	GO:0019853: L-ascorbic acid biosynthetic process	4.80E-03
64	GO:0010039: response to iron ion	4.80E-03
65	GO:0090351: seedling development	4.80E-03
66	GO:0046854: phosphatidylinositol phosphorylation	4.80E-03
67	GO:0000162: tryptophan biosynthetic process	5.18E-03
68	GO:0006874: cellular calcium ion homeostasis	5.95E-03
69	GO:0019915: lipid storage	6.35E-03
70	GO:0016998: cell wall macromolecule catabolic process	6.35E-03
71	GO:0019748: secondary metabolic process	6.76E-03
72	GO:0006730: one-carbon metabolic process	6.76E-03
73	GO:0009814: defense response, incompatible interaction	6.76E-03
74	GO:0009693: ethylene biosynthetic process	7.18E-03
75	GO:0006662: glycerol ether metabolic process	8.95E-03
76	GO:0009646: response to absence of light	9.42E-03
77	GO:0048544: recognition of pollen	9.42E-03
78	GO:0009851: auxin biosynthetic process	9.90E-03
79	GO:0071281: cellular response to iron ion	1.14E-02
80	GO:0009615: response to virus	1.35E-02
81	GO:0009627: systemic acquired resistance	1.45E-02
82	GO:0006906: vesicle fusion	1.45E-02
83	GO:0006974: cellular response to DNA damage stimulus	1.45E-02
84	GO:0006888: ER to Golgi vesicle-mediated transport	1.51E-02
85	GO:0016049: cell growth	1.57E-02
86	GO:0009817: defense response to fungus, incompatible interaction	1.62E-02
87	GO:0030244: cellulose biosynthetic process	1.62E-02
88	GO:0009832: plant-type cell wall biogenesis	1.68E-02
89	GO:0006499: N-terminal protein myristoylation	1.74E-02
90	GO:0009407: toxin catabolic process	1.74E-02
91	GO:0007568: aging	1.80E-02
92	GO:0010043: response to zinc ion	1.80E-02
93	GO:0045454: cell redox homeostasis	1.85E-02
94	GO:0006099: tricarboxylic acid cycle	1.98E-02
95	GO:0034599: cellular response to oxidative stress	1.98E-02
96	GO:0006839: mitochondrial transport	2.11E-02
97	GO:0006631: fatty acid metabolic process	2.17E-02
98	GO:0006887: exocytosis	2.17E-02
99	GO:0009744: response to sucrose	2.30E-02
100	GO:0051707: response to other organism	2.30E-02
101	GO:0009636: response to toxic substance	2.50E-02
102	GO:0009846: pollen germination	2.70E-02
103	GO:0006486: protein glycosylation	2.84E-02
104	GO:0015031: protein transport	2.85E-02
105	GO:0009909: regulation of flower development	3.06E-02
106	GO:0006096: glycolytic process	3.20E-02
107	GO:0048316: seed development	3.28E-02
108	GO:0009626: plant-type hypersensitive response	3.35E-02
109	GO:0009620: response to fungus	3.43E-02
110	GO:0016569: covalent chromatin modification	3.50E-02
111	GO:0042545: cell wall modification	3.58E-02
112	GO:0055114: oxidation-reduction process	4.01E-02
113	GO:0009416: response to light stimulus	4.03E-02

Rank	GO Term	Adjusted P value
1	GO:0070577: lysine-acetylated histone binding	0.00E+00
2	GO:0016504: peptidase activator activity	0.00E+00
3	GO:0008320: protein transmembrane transporter activity	4.66E-05
4	GO:0004425: indole-3-glycerol-phosphate synthase activity	1.04E-04
5	GO:0030942: endoplasmic reticulum signal peptide binding	1.04E-04
6	GO:0033925: mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	1.04E-04
7	GO:0032266: phosphatidylinositol-3-phosphate binding	1.04E-04
8	GO:0004476: mannose-6-phosphate isomerase activity	1.04E-04
9	GO:0004649: poly(ADP-ribose) glycohydrolase activity	1.04E-04
10	GO:0010297: heteropolysaccharide binding	2.44E-04
11	GO:0052740: 1-acyl-2-lysophosphatidylserine acylhydrolase activity	2.44E-04
12	GO:0052691: UDP-arabinopyranose mutase activity	2.44E-04
13	GO:0015117: thiosulfate transmembrane transporter activity	2.44E-04
14	GO:1901677: phosphate transmembrane transporter activity	2.44E-04
15	GO:0052739: phosphatidylserine 1-acylhydrolase activity	2.44E-04
16	GO:0004478: methionine adenosyltransferase activity	4.05E-04
17	GO:0010309: acireductone dioxygenase [iron(II)-requiring] activity	4.05E-04
18	GO:0005310: dicarboxylic acid transmembrane transporter activity	4.05E-04
19	GO:0015141: succinate transmembrane transporter activity	4.05E-04
20	GO:0004441: inositol-1,4-bisphosphate 1-phosphatase activity	4.05E-04
21	GO:0017077: oxidative phosphorylation uncoupler activity	5.82E-04
22	GO:0004449: isocitrate dehydrogenase (NAD+) activity	5.82E-04
23	GO:0015131: oxaloacetate transmembrane transporter activity	5.82E-04
24	GO:0004791: thioredoxin-disulfide reductase activity	7.18E-04
25	GO:0016866: intramolecular transferase activity	7.73E-04
26	GO:0070628: proteasome binding	7.73E-04
27	GO:0004607: phosphatidylcholine-sterol O-acyltransferase activity	7.73E-04
28	GO:0004031: aldehyde oxidase activity	7.73E-04
29	GO:0050302: indole-3-acetaldehyde oxidase activity	7.73E-04
30	GO:0008374: O-acyltransferase activity	9.77E-04
31	GO:0019139: cytokinin dehydrogenase activity	9.77E-04
32	GO:0031386: protein tag	9.77E-04
33	GO:0008474: palmitoyl-(protein) hydrolase activity	1.19E-03
34	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	1.43E-03
35	GO:0003950: NAD+ ADP-ribosyltransferase activity	1.43E-03
36	GO:0003872: 6-phosphofructokinase activity	1.67E-03
37	GO:0015140: malate transmembrane transporter activity	1.67E-03
38	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.73E-03
39	GO:0003746: translation elongation factor activity	1.90E-03
40	GO:0008312: 7S RNA binding	1.93E-03
41	GO:0008970: phosphatidylcholine 1-acylhydrolase activity	2.21E-03
42	GO:0050660: flavin adenine dinucleotide binding	2.34E-03
43	GO:0030234: enzyme regulator activity	3.10E-03
44	GO:0004568: chitinase activity	3.10E-03
45	GO:0031625: ubiquitin protein ligase binding	3.62E-03
46	GO:0015116: sulfate transmembrane transporter activity	3.75E-03
47	GO:0031072: heat shock protein binding	4.09E-03
48	GO:0008131: primary amine oxidase activity	4.44E-03
49	GO:0015035: protein disulfide oxidoreductase activity	4.77E-03
50	GO:0005217: intracellular ligand-gated ion channel activity	4.80E-03
51	GO:0008061: chitin binding	4.80E-03
52	GO:0004970: ionotropic glutamate receptor activity	4.80E-03
53	GO:0043130: ubiquitin binding	5.56E-03
54	GO:0004298: threonine-type endopeptidase activity	6.35E-03
55	GO:0016760: cellulose synthase (UDP-forming) activity	7.18E-03
56	GO:0004499: N,N-dimethylaniline monooxygenase activity	7.61E-03
57	GO:0047134: protein-disulfide reductase activity	8.05E-03
58	GO:0004518: nuclease activity	1.09E-02
59	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.14E-02
60	GO:0030246: carbohydrate binding	1.26E-02
61	GO:0051213: dioxygenase activity	1.35E-02
62	GO:0016798: hydrolase activity, acting on glycosyl bonds	1.51E-02
63	GO:0004497: monooxygenase activity	1.54E-02
64	GO:0061630: ubiquitin protein ligase activity	1.62E-02
65	GO:0052689: carboxylic ester hydrolase activity	1.70E-02
66	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	1.92E-02
67	GO:0004712: protein serine/threonine/tyrosine kinase activity	2.04E-02
68	GO:0000149: SNARE binding	2.04E-02
69	GO:0005506: iron ion binding	2.07E-02
70	GO:0050661: NADP binding	2.11E-02
71	GO:0042393: histone binding	2.11E-02
72	GO:0004364: glutathione transferase activity	2.24E-02
73	GO:0005484: SNAP receptor activity	2.30E-02
74	GO:0051537: 2 iron, 2 sulfur cluster binding	2.43E-02
75	GO:0051287: NAD binding	2.64E-02
76	GO:0045330: aspartyl esterase activity	3.06E-02
77	GO:0030599: pectinesterase activity	3.50E-02
78	GO:0016887: ATPase activity	3.53E-02
79	GO:0051082: unfolded protein binding	3.66E-02
80	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.37E-02

Rank	GO Term	Adjusted P value
1	GO:0005886: plasma membrane	1.94E-05
2	GO:0033116: endoplasmic reticulum-Golgi intermediate compartment membrane	4.66E-05
3	GO:0000138: Golgi trans cisterna	1.04E-04
4	GO:0000814: ESCRT II complex	2.44E-04
5	GO:0000502: proteasome complex	3.65E-04
6	GO:0030130: clathrin coat of trans-Golgi network vesicle	4.05E-04
7	GO:0030132: clathrin coat of coated pit	4.05E-04
8	GO:0005839: proteasome core complex	4.13E-04
9	GO:0005789: endoplasmic reticulum membrane	6.11E-04
10	GO:0031372: UBC13-MMS2 complex	7.73E-04
11	GO:0005945: 6-phosphofructokinase complex	9.77E-04
12	GO:0032580: Golgi cisterna membrane	9.85E-04
13	GO:0005829: cytosol	1.90E-03
14	GO:0019773: proteasome core complex, alpha-subunit complex	2.21E-03
15	GO:0005786: signal recognition particle, endoplasmic reticulum targeting	2.21E-03
16	GO:0005811: lipid particle	2.21E-03
17	GO:0005737: cytoplasm	2.27E-03
18	GO:0031901: early endosome membrane	2.49E-03
19	GO:0031090: organelle membrane	2.49E-03
20	GO:0008540: proteasome regulatory particle, base subcomplex	2.79E-03
21	GO:0008541: proteasome regulatory particle, lid subcomplex	3.42E-03
22	GO:0005795: Golgi stack	4.80E-03
23	GO:0005769: early endosome	5.18E-03
24	GO:0005773: vacuole	7.09E-03
25	GO:0005770: late endosome	8.95E-03
26	GO:0009504: cell plate	9.90E-03
27	GO:0071944: cell periphery	1.14E-02
28	GO:0031201: SNARE complex	2.17E-02
29	GO:0009505: plant-type cell wall	2.80E-02
30	GO:0005794: Golgi apparatus	2.98E-02
31	GO:0005774: vacuolar membrane	3.28E-02
32	GO:0005783: endoplasmic reticulum	3.39E-02
33	GO:0009506: plasmodesma	4.00E-02