Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G24270

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0005996: monosaccharide metabolic process0.00E+00
2GO:0035674: tricarboxylic acid transmembrane transport0.00E+00
3GO:0046471: phosphatidylglycerol metabolic process0.00E+00
4GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
5GO:1901918: negative regulation of exoribonuclease activity0.00E+00
6GO:0033494: ferulate metabolic process0.00E+00
7GO:0061635: regulation of protein complex stability0.00E+00
8GO:0009773: photosynthetic electron transport in photosystem I7.86E-11
9GO:0015995: chlorophyll biosynthetic process4.18E-09
10GO:0090391: granum assembly2.87E-08
11GO:0055114: oxidation-reduction process1.25E-06
12GO:0006094: gluconeogenesis1.30E-06
13GO:0006636: unsaturated fatty acid biosynthetic process2.94E-06
14GO:0015979: photosynthesis3.67E-06
15GO:0010196: nonphotochemical quenching4.97E-06
16GO:0006021: inositol biosynthetic process5.68E-05
17GO:0015994: chlorophyll metabolic process5.68E-05
18GO:0010207: photosystem II assembly6.35E-05
19GO:0009768: photosynthesis, light harvesting in photosystem I1.22E-04
20GO:0010190: cytochrome b6f complex assembly1.30E-04
21GO:0042549: photosystem II stabilization1.30E-04
22GO:0006631: fatty acid metabolic process1.87E-04
23GO:0010114: response to red light2.16E-04
24GO:0046467: membrane lipid biosynthetic process2.94E-04
25GO:0015671: oxygen transport2.94E-04
26GO:0071277: cellular response to calcium ion2.94E-04
27GO:0080093: regulation of photorespiration2.94E-04
28GO:0031998: regulation of fatty acid beta-oxidation2.94E-04
29GO:0010028: xanthophyll cycle2.94E-04
30GO:0034337: RNA folding2.94E-04
31GO:0006835: dicarboxylic acid transport2.94E-04
32GO:0000023: maltose metabolic process2.94E-04
33GO:0000025: maltose catabolic process2.94E-04
34GO:0005980: glycogen catabolic process2.94E-04
35GO:0019252: starch biosynthetic process3.43E-04
36GO:0032259: methylation3.52E-04
37GO:0006098: pentose-phosphate shunt4.36E-04
38GO:0006096: glycolytic process4.59E-04
39GO:0005982: starch metabolic process5.16E-04
40GO:0005976: polysaccharide metabolic process6.45E-04
41GO:0006898: receptor-mediated endocytosis6.45E-04
42GO:0071457: cellular response to ozone6.45E-04
43GO:0010353: response to trehalose6.45E-04
44GO:0016122: xanthophyll metabolic process6.45E-04
45GO:0030388: fructose 1,6-bisphosphate metabolic process6.45E-04
46GO:0080029: cellular response to boron-containing substance levels6.45E-04
47GO:0005983: starch catabolic process7.93E-04
48GO:0019253: reductive pentose-phosphate cycle1.01E-03
49GO:0010143: cutin biosynthetic process1.01E-03
50GO:0009735: response to cytokinin1.02E-03
51GO:0006518: peptide metabolic process1.04E-03
52GO:0006000: fructose metabolic process1.04E-03
53GO:0006810: transport1.13E-03
54GO:0006633: fatty acid biosynthetic process1.21E-03
55GO:0046713: borate transport1.50E-03
56GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly1.50E-03
57GO:1902358: sulfate transmembrane transport1.50E-03
58GO:0006020: inositol metabolic process1.50E-03
59GO:0071484: cellular response to light intensity1.50E-03
60GO:0061077: chaperone-mediated protein folding1.68E-03
61GO:0071483: cellular response to blue light2.01E-03
62GO:0010021: amylopectin biosynthetic process2.01E-03
63GO:0071486: cellular response to high light intensity2.01E-03
64GO:0009765: photosynthesis, light harvesting2.01E-03
65GO:0045727: positive regulation of translation2.01E-03
66GO:0016120: carotene biosynthetic process2.56E-03
67GO:0006656: phosphatidylcholine biosynthetic process2.56E-03
68GO:0009904: chloroplast accumulation movement2.56E-03
69GO:0006097: glyoxylate cycle2.56E-03
70GO:0071493: cellular response to UV-B2.56E-03
71GO:0009228: thiamine biosynthetic process3.16E-03
72GO:0046855: inositol phosphate dephosphorylation3.16E-03
73GO:0010304: PSII associated light-harvesting complex II catabolic process3.16E-03
74GO:0010264: myo-inositol hexakisphosphate biosynthetic process3.16E-03
75GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.16E-03
76GO:1902456: regulation of stomatal opening3.16E-03
77GO:0080167: response to karrikin3.77E-03
78GO:1901259: chloroplast rRNA processing3.81E-03
79GO:0009903: chloroplast avoidance movement3.81E-03
80GO:0010189: vitamin E biosynthetic process3.81E-03
81GO:0009854: oxidative photosynthetic carbon pathway3.81E-03
82GO:0008272: sulfate transport4.49E-03
83GO:0009769: photosynthesis, light harvesting in photosystem II4.49E-03
84GO:1900057: positive regulation of leaf senescence4.49E-03
85GO:0009645: response to low light intensity stimulus4.49E-03
86GO:0009610: response to symbiotic fungus4.49E-03
87GO:0009395: phospholipid catabolic process4.49E-03
88GO:0009772: photosynthetic electron transport in photosystem II4.49E-03
89GO:0051607: defense response to virus4.61E-03
90GO:0010027: thylakoid membrane organization4.88E-03
91GO:0070413: trehalose metabolism in response to stress5.21E-03
92GO:0009704: de-etiolation5.21E-03
93GO:0019827: stem cell population maintenance5.21E-03
94GO:0008610: lipid biosynthetic process5.21E-03
95GO:0005978: glycogen biosynthetic process5.21E-03
96GO:0030091: protein repair5.21E-03
97GO:0009642: response to light intensity5.21E-03
98GO:0009657: plastid organization5.98E-03
99GO:0032544: plastid translation5.98E-03
100GO:2000031: regulation of salicylic acid mediated signaling pathway5.98E-03
101GO:0006002: fructose 6-phosphate metabolic process5.98E-03
102GO:0015996: chlorophyll catabolic process5.98E-03
103GO:0019430: removal of superoxide radicals5.98E-03
104GO:0018298: protein-chromophore linkage6.37E-03
105GO:0010206: photosystem II repair6.77E-03
106GO:0019432: triglyceride biosynthetic process6.77E-03
107GO:0090333: regulation of stomatal closure6.77E-03
108GO:0006783: heme biosynthetic process6.77E-03
109GO:0006754: ATP biosynthetic process6.77E-03
110GO:0009821: alkaloid biosynthetic process6.77E-03
111GO:0010218: response to far red light7.03E-03
112GO:0009631: cold acclimation7.37E-03
113GO:0010205: photoinhibition7.60E-03
114GO:0006779: porphyrin-containing compound biosynthetic process7.60E-03
115GO:0009637: response to blue light8.08E-03
116GO:0034599: cellular response to oxidative stress8.45E-03
117GO:0006782: protoporphyrinogen IX biosynthetic process8.48E-03
118GO:0009641: shade avoidance8.48E-03
119GO:0043085: positive regulation of catalytic activity9.38E-03
120GO:0000272: polysaccharide catabolic process9.38E-03
121GO:0018119: peptidyl-cysteine S-nitrosylation9.38E-03
122GO:0006790: sulfur compound metabolic process1.03E-02
123GO:0002213: defense response to insect1.03E-02
124GO:0006108: malate metabolic process1.13E-02
125GO:0006006: glucose metabolic process1.13E-02
126GO:0018107: peptidyl-threonine phosphorylation1.13E-02
127GO:0009725: response to hormone1.13E-02
128GO:0005986: sucrose biosynthetic process1.13E-02
129GO:0009644: response to high light intensity1.13E-02
130GO:0007015: actin filament organization1.23E-02
131GO:0010223: secondary shoot formation1.23E-02
132GO:0009266: response to temperature stimulus1.23E-02
133GO:0005985: sucrose metabolic process1.33E-02
134GO:0046854: phosphatidylinositol phosphorylation1.33E-02
135GO:0006364: rRNA processing1.41E-02
136GO:0010025: wax biosynthetic process1.44E-02
137GO:0005992: trehalose biosynthetic process1.55E-02
138GO:0006979: response to oxidative stress1.57E-02
139GO:0009695: jasmonic acid biosynthetic process1.66E-02
140GO:0016114: terpenoid biosynthetic process1.78E-02
141GO:0016998: cell wall macromolecule catabolic process1.78E-02
142GO:0009269: response to desiccation1.78E-02
143GO:2000022: regulation of jasmonic acid mediated signaling pathway1.90E-02
144GO:0030433: ubiquitin-dependent ERAD pathway1.90E-02
145GO:0019748: secondary metabolic process1.90E-02
146GO:0016226: iron-sulfur cluster assembly1.90E-02
147GO:0016117: carotenoid biosynthetic process2.27E-02
148GO:0070417: cellular response to cold2.27E-02
149GO:0042335: cuticle development2.40E-02
150GO:0000413: protein peptidyl-prolyl isomerization2.40E-02
151GO:0042631: cellular response to water deprivation2.40E-02
152GO:0071472: cellular response to salt stress2.53E-02
153GO:0006662: glycerol ether metabolic process2.53E-02
154GO:0009741: response to brassinosteroid2.53E-02
155GO:0009409: response to cold2.58E-02
156GO:0015986: ATP synthesis coupled proton transport2.66E-02
157GO:0009408: response to heat2.68E-02
158GO:0008654: phospholipid biosynthetic process2.80E-02
159GO:0032502: developmental process3.08E-02
160GO:0009630: gravitropism3.08E-02
161GO:0005975: carbohydrate metabolic process3.12E-02
162GO:0009788: negative regulation of abscisic acid-activated signaling pathway3.97E-02
163GO:0042128: nitrate assimilation4.13E-02
164GO:0010411: xyloglucan metabolic process4.29E-02
165GO:0016311: dephosphorylation4.44E-02
166GO:0042742: defense response to bacterium4.57E-02
167GO:0010311: lateral root formation4.77E-02
168GO:0000160: phosphorelay signal transduction system4.77E-02
169GO:0009813: flavonoid biosynthetic process4.77E-02
RankGO TermAdjusted P value
1GO:0052667: phosphomethylethanolamine N-methyltransferase activity0.00E+00
2GO:0008887: glycerate kinase activity0.00E+00
3GO:0045550: geranylgeranyl reductase activity0.00E+00
4GO:0016166: phytoene dehydrogenase activity0.00E+00
5GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
6GO:0033840: NDP-glucose-starch glucosyltransferase activity0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
10GO:0015142: tricarboxylic acid transmembrane transporter activity0.00E+00
11GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
12GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
13GO:0030794: (S)-coclaurine-N-methyltransferase activity0.00E+00
14GO:0046422: violaxanthin de-epoxidase activity0.00E+00
15GO:0009011: starch synthase activity4.05E-07
16GO:0004332: fructose-bisphosphate aldolase activity1.78E-06
17GO:0010297: heteropolysaccharide binding3.96E-06
18GO:0004373: glycogen (starch) synthase activity1.41E-05
19GO:0004565: beta-galactosidase activity5.23E-05
20GO:0031409: pigment binding9.00E-05
21GO:0016491: oxidoreductase activity2.58E-04
22GO:0004645: phosphorylase activity2.94E-04
23GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity2.94E-04
24GO:0045485: omega-6 fatty acid desaturase activity2.94E-04
25GO:0034256: chlorophyll(ide) b reductase activity2.94E-04
26GO:0031957: very long-chain fatty acid-CoA ligase activity2.94E-04
27GO:0015168: glycerol transmembrane transporter activity2.94E-04
28GO:0045486: naringenin 3-dioxygenase activity2.94E-04
29GO:0005344: oxygen transporter activity2.94E-04
30GO:0035671: enone reductase activity2.94E-04
31GO:0050521: alpha-glucan, water dikinase activity2.94E-04
32GO:0008184: glycogen phosphorylase activity2.94E-04
33GO:0004134: 4-alpha-glucanotransferase activity2.94E-04
34GO:0047066: phospholipid-hydroperoxide glutathione peroxidase activity2.94E-04
35GO:0008168: methyltransferase activity5.34E-04
36GO:0052833: inositol monophosphate 4-phosphatase activity6.45E-04
37GO:0019172: glyoxalase III activity6.45E-04
38GO:0004512: inositol-3-phosphate synthase activity6.45E-04
39GO:0047100: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity6.45E-04
40GO:0000234: phosphoethanolamine N-methyltransferase activity6.45E-04
41GO:0008883: glutamyl-tRNA reductase activity6.45E-04
42GO:0047746: chlorophyllase activity6.45E-04
43GO:0042389: omega-3 fatty acid desaturase activity6.45E-04
44GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity6.45E-04
45GO:0052832: inositol monophosphate 3-phosphatase activity6.45E-04
46GO:0033201: alpha-1,4-glucan synthase activity6.45E-04
47GO:0042132: fructose 1,6-bisphosphate 1-phosphatase activity6.45E-04
48GO:0018708: thiol S-methyltransferase activity6.45E-04
49GO:0003844: 1,4-alpha-glucan branching enzyme activity6.45E-04
50GO:0008934: inositol monophosphate 1-phosphatase activity6.45E-04
51GO:0016168: chlorophyll binding6.48E-04
52GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor1.04E-03
53GO:0010277: chlorophyllide a oxygenase [overall] activity1.04E-03
54GO:0043169: cation binding1.04E-03
55GO:0005310: dicarboxylic acid transmembrane transporter activity1.04E-03
56GO:0050734: hydroxycinnamoyltransferase activity1.04E-03
57GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.50E-03
58GO:0016851: magnesium chelatase activity1.50E-03
59GO:0046715: borate transmembrane transporter activity1.50E-03
60GO:0017077: oxidative phosphorylation uncoupler activity1.50E-03
61GO:0019201: nucleotide kinase activity1.50E-03
62GO:0051537: 2 iron, 2 sulfur cluster binding1.72E-03
63GO:0015204: urea transmembrane transporter activity2.01E-03
64GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor2.01E-03
65GO:0045300: acyl-[acyl-carrier-protein] desaturase activity2.56E-03
66GO:0016788: hydrolase activity, acting on ester bonds2.79E-03
67GO:0004784: superoxide dismutase activity3.16E-03
68GO:0004462: lactoylglutathione lyase activity3.16E-03
69GO:0016615: malate dehydrogenase activity3.16E-03
70GO:0008200: ion channel inhibitor activity3.16E-03
71GO:2001070: starch binding3.16E-03
72GO:0048038: quinone binding3.38E-03
73GO:0102391: decanoate--CoA ligase activity3.81E-03
74GO:0030060: L-malate dehydrogenase activity3.81E-03
75GO:0004602: glutathione peroxidase activity3.81E-03
76GO:0033743: peptide-methionine (R)-S-oxide reductase activity3.81E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity3.81E-03
78GO:0004017: adenylate kinase activity3.81E-03
79GO:0004467: long-chain fatty acid-CoA ligase activity4.49E-03
80GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water5.98E-03
81GO:0008271: secondary active sulfate transmembrane transporter activity5.98E-03
82GO:0016844: strictosidine synthase activity7.60E-03
83GO:0003993: acid phosphatase activity8.45E-03
84GO:0030234: enzyme regulator activity8.48E-03
85GO:0008047: enzyme activator activity8.48E-03
86GO:0050661: NADP binding9.22E-03
87GO:0044183: protein binding involved in protein folding9.38E-03
88GO:0047372: acylglycerol lipase activity9.38E-03
89GO:0015116: sulfate transmembrane transporter activity1.03E-02
90GO:0004022: alcohol dehydrogenase (NAD) activity1.13E-02
91GO:0031072: heat shock protein binding1.13E-02
92GO:0003755: peptidyl-prolyl cis-trans isomerase activity1.22E-02
93GO:0051536: iron-sulfur cluster binding1.55E-02
94GO:0031418: L-ascorbic acid binding1.55E-02
95GO:0005528: FK506 binding1.55E-02
96GO:0003727: single-stranded RNA binding2.14E-02
97GO:0016787: hydrolase activity2.14E-02
98GO:0047134: protein-disulfide reductase activity2.27E-02
99GO:0019843: rRNA binding2.52E-02
100GO:0030246: carbohydrate binding2.52E-02
101GO:0046933: proton-transporting ATP synthase activity, rotational mechanism2.53E-02
102GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen2.59E-02
103GO:0050662: coenzyme binding2.66E-02
104GO:0004791: thioredoxin-disulfide reductase activity2.66E-02
105GO:0016853: isomerase activity2.66E-02
106GO:0004872: receptor activity2.80E-02
107GO:0016762: xyloglucan:xyloglucosyl transferase activity2.94E-02
108GO:0000156: phosphorelay response regulator activity3.22E-02
109GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.22E-02
110GO:0016791: phosphatase activity3.37E-02
111GO:0015250: water channel activity3.82E-02
112GO:0016798: hydrolase activity, acting on glycosyl bonds4.29E-02
113GO:0042802: identical protein binding4.41E-02
114GO:0004222: metalloendopeptidase activity4.94E-02
RankGO TermAdjusted P value
1GO:0009515: granal stacked thylakoid0.00E+00
2GO:0042579: microbody0.00E+00
3GO:0009507: chloroplast1.20E-44
4GO:0009534: chloroplast thylakoid3.68E-36
5GO:0009535: chloroplast thylakoid membrane1.35E-29
6GO:0009941: chloroplast envelope4.01E-21
7GO:0009579: thylakoid6.43E-14
8GO:0009570: chloroplast stroma1.76E-12
9GO:0031977: thylakoid lumen9.15E-10
10GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)1.89E-09
11GO:0009543: chloroplast thylakoid lumen2.27E-09
12GO:0010287: plastoglobule7.59E-07
13GO:0031969: chloroplast membrane2.27E-05
14GO:0048046: apoplast4.70E-05
15GO:0030076: light-harvesting complex7.60E-05
16GO:0042651: thylakoid membrane1.22E-04
17GO:0009501: amyloplast2.94E-04
18GO:0010319: stromule5.21E-04
19GO:0031357: integral component of chloroplast inner membrane6.45E-04
20GO:0000427: plastid-encoded plastid RNA polymerase complex6.45E-04
21GO:0009569: chloroplast starch grain6.45E-04
22GO:0009509: chromoplast1.04E-03
23GO:0010007: magnesium chelatase complex1.04E-03
24GO:0009544: chloroplast ATP synthase complex2.01E-03
25GO:0009517: PSII associated light-harvesting complex II2.01E-03
26GO:0009522: photosystem I2.94E-03
27GO:0009523: photosystem II3.16E-03
28GO:0045261: proton-transporting ATP synthase complex, catalytic core F(1)3.16E-03
29GO:0031982: vesicle5.21E-03
30GO:0008180: COP9 signalosome6.77E-03
31GO:0032040: small-subunit processome1.03E-02
32GO:0030095: chloroplast photosystem II1.23E-02
33GO:0043234: protein complex1.44E-02
34GO:0009654: photosystem II oxygen evolving complex1.66E-02
35GO:0015935: small ribosomal subunit1.78E-02
36GO:0009706: chloroplast inner membrane2.01E-02
37GO:0005773: vacuole2.28E-02
38GO:0019898: extrinsic component of membrane2.80E-02
39GO:0019005: SCF ubiquitin ligase complex4.61E-02
<
Gene type



Gene DE type