co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G24150

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0070125: mitochondrial translational elongation	0.00E+00
2	GO:0061157: mRNA destabilization	0.00E+00
3	GO:2000505: regulation of energy homeostasis	0.00E+00
4	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
5	GO:0090706: specification of plant organ position	0.00E+00
6	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
7	GO:0017038: protein import	0.00E+00
8	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
9	GO:0010068: protoderm histogenesis	0.00E+00
10	GO:0007638: mechanosensory behavior	0.00E+00
11	GO:0080127: fruit septum development	0.00E+00
12	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
13	GO:0009733: response to auxin	2.15E-08
14	GO:0040008: regulation of growth	6.31E-07
15	GO:0009734: auxin-activated signaling pathway	6.72E-07
16	GO:0046620: regulation of organ growth	7.61E-07
17	GO:1900865: chloroplast RNA modification	9.65E-05
18	GO:0009926: auxin polar transport	1.70E-04
19	GO:0010582: floral meristem determinacy	1.87E-04
20	GO:0016123: xanthophyll biosynthetic process	2.65E-04
21	GO:0010158: abaxial cell fate specification	2.65E-04
22	GO:0010207: photosystem II assembly	2.68E-04
23	GO:0016554: cytidine to uridine editing	3.71E-04
24	GO:0015995: chlorophyll biosynthetic process	4.14E-04
25	GO:0030488: tRNA methylation	4.94E-04
26	GO:0010480: microsporocyte differentiation	5.75E-04
27	GO:0010080: regulation of floral meristem growth	5.75E-04
28	GO:1902458: positive regulation of stomatal opening	5.75E-04
29	GO:0015904: tetracycline transport	5.75E-04
30	GO:0010450: inflorescence meristem growth	5.75E-04
31	GO:0000025: maltose catabolic process	5.75E-04
32	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.75E-04
33	GO:0006438: valyl-tRNA aminoacylation	5.75E-04
34	GO:0010497: plasmodesmata-mediated intercellular transport	9.57E-04
35	GO:0000373: Group II intron splicing	1.14E-03
36	GO:0001736: establishment of planar polarity	1.24E-03
37	GO:0009786: regulation of asymmetric cell division	1.24E-03
38	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.24E-03
39	GO:0006568: tryptophan metabolic process	1.24E-03
40	GO:2000123: positive regulation of stomatal complex development	1.24E-03
41	GO:0010024: phytochromobilin biosynthetic process	1.24E-03
42	GO:0048255: mRNA stabilization	1.24E-03
43	GO:0018026: peptidyl-lysine monomethylation	1.24E-03
44	GO:0006779: porphyrin-containing compound biosynthetic process	1.35E-03
45	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.42E-03
46	GO:0048829: root cap development	1.58E-03
47	GO:0009641: shade avoidance	1.58E-03
48	GO:0006782: protoporphyrinogen IX biosynthetic process	1.58E-03
49	GO:0051604: protein maturation	2.03E-03
50	GO:0071398: cellular response to fatty acid	2.03E-03
51	GO:2001295: malonyl-CoA biosynthetic process	2.03E-03
52	GO:0045165: cell fate commitment	2.03E-03
53	GO:0045910: negative regulation of DNA recombination	2.03E-03
54	GO:0033591: response to L-ascorbic acid	2.03E-03
55	GO:0010022: meristem determinacy	2.03E-03
56	GO:0045037: protein import into chloroplast stroma	2.09E-03
57	GO:0005983: starch catabolic process	2.09E-03
58	GO:0010027: thylakoid membrane organization	2.12E-03
59	GO:1990019: protein storage vacuole organization	2.95E-03
60	GO:0016556: mRNA modification	2.95E-03
61	GO:0010371: regulation of gibberellin biosynthetic process	2.95E-03
62	GO:0051513: regulation of monopolar cell growth	2.95E-03
63	GO:0007231: osmosensory signaling pathway	2.95E-03
64	GO:0009102: biotin biosynthetic process	2.95E-03
65	GO:0051639: actin filament network formation	2.95E-03
66	GO:0010239: chloroplast mRNA processing	2.95E-03
67	GO:0010306: rhamnogalacturonan II biosynthetic process	2.95E-03
68	GO:0048645: animal organ formation	2.95E-03
69	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.95E-03
70	GO:0046739: transport of virus in multicellular host	2.95E-03
71	GO:0051017: actin filament bundle assembly	3.73E-03
72	GO:0010109: regulation of photosynthesis	3.97E-03
73	GO:0051764: actin crosslink formation	3.97E-03
74	GO:0009765: photosynthesis, light harvesting	3.97E-03
75	GO:0033500: carbohydrate homeostasis	3.97E-03
76	GO:2000038: regulation of stomatal complex development	3.97E-03
77	GO:0010431: seed maturation	4.53E-03
78	GO:0010236: plastoquinone biosynthetic process	5.10E-03
79	GO:0045038: protein import into chloroplast thylakoid membrane	5.10E-03
80	GO:0045487: gibberellin catabolic process	5.10E-03
81	GO:0048497: maintenance of floral organ identity	5.10E-03
82	GO:0009107: lipoate biosynthetic process	5.10E-03
83	GO:1902183: regulation of shoot apical meristem development	5.10E-03
84	GO:0000304: response to singlet oxygen	5.10E-03
85	GO:0080110: sporopollenin biosynthetic process	5.10E-03
86	GO:0010375: stomatal complex patterning	5.10E-03
87	GO:0016120: carotene biosynthetic process	5.10E-03
88	GO:0009831: plant-type cell wall modification involved in multidimensional cell growth	5.42E-03
89	GO:0018258: protein O-linked glycosylation via hydroxyproline	6.33E-03
90	GO:0010405: arabinogalactan protein metabolic process	6.33E-03
91	GO:0009913: epidermal cell differentiation	6.33E-03
92	GO:1902456: regulation of stomatal opening	6.33E-03
93	GO:0042793: transcription from plastid promoter	6.33E-03
94	GO:0010190: cytochrome b6f complex assembly	6.33E-03
95	GO:0033365: protein localization to organelle	6.33E-03
96	GO:0003006: developmental process involved in reproduction	6.33E-03
97	GO:0016117: carotenoid biosynthetic process	6.40E-03
98	GO:0009793: embryo development ending in seed dormancy	6.65E-03
99	GO:0009451: RNA modification	6.71E-03
100	GO:0045892: negative regulation of transcription, DNA-templated	6.93E-03
101	GO:0010182: sugar mediated signaling pathway	7.47E-03
102	GO:0009958: positive gravitropism	7.47E-03
103	GO:1901259: chloroplast rRNA processing	7.65E-03
104	GO:0009099: valine biosynthetic process	7.65E-03
105	GO:0010019: chloroplast-nucleus signaling pathway	7.65E-03
106	GO:0080086: stamen filament development	7.65E-03
107	GO:0009648: photoperiodism	7.65E-03
108	GO:0071333: cellular response to glucose stimulus	7.65E-03
109	GO:0009082: branched-chain amino acid biosynthetic process	7.65E-03
110	GO:0006458: 'de novo' protein folding	7.65E-03
111	GO:0042026: protein refolding	7.65E-03
112	GO:0017148: negative regulation of translation	7.65E-03
113	GO:0048544: recognition of pollen	8.04E-03
114	GO:0009416: response to light stimulus	8.96E-03
115	GO:0006955: immune response	9.06E-03
116	GO:0010098: suspensor development	9.06E-03
117	GO:0010050: vegetative phase change	9.06E-03
118	GO:0048437: floral organ development	9.06E-03
119	GO:0000302: response to reactive oxygen species	9.25E-03
120	GO:0032502: developmental process	9.89E-03
121	GO:0010583: response to cyclopentenone	9.89E-03
122	GO:0007275: multicellular organism development	1.04E-02
123	GO:0006353: DNA-templated transcription, termination	1.06E-02
124	GO:2000070: regulation of response to water deprivation	1.06E-02
125	GO:0000105: histidine biosynthetic process	1.06E-02
126	GO:0009850: auxin metabolic process	1.06E-02
127	GO:0006605: protein targeting	1.06E-02
128	GO:0009828: plant-type cell wall loosening	1.12E-02
129	GO:0006526: arginine biosynthetic process	1.21E-02
130	GO:0010093: specification of floral organ identity	1.21E-02
131	GO:0015996: chlorophyll catabolic process	1.21E-02
132	GO:0007186: G-protein coupled receptor signaling pathway	1.21E-02
133	GO:0009657: plastid organization	1.21E-02
134	GO:0009097: isoleucine biosynthetic process	1.21E-02
135	GO:0009658: chloroplast organization	1.26E-02
136	GO:0006098: pentose-phosphate shunt	1.38E-02
137	GO:2000024: regulation of leaf development	1.38E-02
138	GO:0048507: meristem development	1.38E-02
139	GO:0009742: brassinosteroid mediated signaling pathway	1.39E-02
140	GO:0031425: chloroplast RNA processing	1.55E-02
141	GO:0042761: very long-chain fatty acid biosynthetic process	1.55E-02
142	GO:0009098: leucine biosynthetic process	1.55E-02
143	GO:0006298: mismatch repair	1.73E-02
144	GO:0016441: posttranscriptional gene silencing	1.73E-02
145	GO:0006949: syncytium formation	1.73E-02
146	GO:0010629: negative regulation of gene expression	1.73E-02
147	GO:0009299: mRNA transcription	1.73E-02
148	GO:0010311: lateral root formation	1.85E-02
149	GO:0006415: translational termination	1.92E-02
150	GO:0009750: response to fructose	1.92E-02
151	GO:0048229: gametophyte development	1.92E-02
152	GO:0048765: root hair cell differentiation	1.92E-02
153	GO:0006816: calcium ion transport	1.92E-02
154	GO:0009073: aromatic amino acid family biosynthetic process	1.92E-02
155	GO:0006865: amino acid transport	2.14E-02
156	GO:0006006: glucose metabolic process	2.32E-02
157	GO:0009691: cytokinin biosynthetic process	2.32E-02
158	GO:0010075: regulation of meristem growth	2.32E-02
159	GO:0009725: response to hormone	2.32E-02
160	GO:0006094: gluconeogenesis	2.32E-02
161	GO:0030048: actin filament-based movement	2.32E-02
162	GO:0010588: cotyledon vascular tissue pattern formation	2.32E-02
163	GO:0010628: positive regulation of gene expression	2.32E-02
164	GO:0010102: lateral root morphogenesis	2.32E-02
165	GO:0009934: regulation of meristem structural organization	2.53E-02
166	GO:0048467: gynoecium development	2.53E-02
167	GO:0009933: meristem structural organization	2.53E-02
168	GO:0006631: fatty acid metabolic process	2.66E-02
169	GO:0010030: positive regulation of seed germination	2.74E-02
170	GO:0070588: calcium ion transmembrane transport	2.74E-02
171	GO:0000162: tryptophan biosynthetic process	2.96E-02
172	GO:0010025: wax biosynthetic process	2.96E-02
173	GO:0016042: lipid catabolic process	2.98E-02
174	GO:0007166: cell surface receptor signaling pathway	3.05E-02
175	GO:0005992: trehalose biosynthetic process	3.19E-02
176	GO:0009944: polarity specification of adaxial/abaxial axis	3.19E-02
177	GO:0006418: tRNA aminoacylation for protein translation	3.42E-02
178	GO:0071555: cell wall organization	3.43E-02
179	GO:0009664: plant-type cell wall organization	3.62E-02
180	GO:0003333: amino acid transmembrane transport	3.66E-02
181	GO:0016998: cell wall macromolecule catabolic process	3.66E-02
182	GO:0048511: rhythmic process	3.66E-02
183	GO:0061077: chaperone-mediated protein folding	3.66E-02
184	GO:0031408: oxylipin biosynthetic process	3.66E-02
185	GO:0030245: cellulose catabolic process	3.90E-02
186	GO:0010082: regulation of root meristem growth	4.15E-02
187	GO:0009693: ethylene biosynthetic process	4.15E-02
188	GO:0009686: gibberellin biosynthetic process	4.15E-02
189	GO:0006351: transcription, DNA-templated	4.17E-02
190	GO:0009826: unidimensional cell growth	4.23E-02
191	GO:0009909: regulation of flower development	4.29E-02
192	GO:0010584: pollen exine formation	4.41E-02
193	GO:0006284: base-excision repair	4.41E-02
194	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	4.67E-02
195	GO:0048367: shoot system development	4.73E-02
196	GO:0048316: seed development	4.73E-02
197	GO:0080022: primary root development	4.93E-02
198	GO:0042335: cuticle development	4.93E-02
199	GO:0008033: tRNA processing	4.93E-02
200	GO:0034220: ion transmembrane transport	4.93E-02
201	GO:0010501: RNA secondary structure unwinding	4.93E-02
202	GO:0010087: phloem or xylem histogenesis	4.93E-02
203	GO:0010118: stomatal movement	4.93E-02
204	GO:0048653: anther development	4.93E-02
205	GO:0042631: cellular response to water deprivation	4.93E-02

Rank	GO Term	Adjusted P value
1	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
2	GO:0010355: homogentisate farnesyltransferase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0004076: biotin synthase activity	0.00E+00
5	GO:0010356: homogentisate geranylgeranyltransferase activity	0.00E+00
6	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
7	GO:0071633: dihydroceramidase activity	0.00E+00
8	GO:0010357: homogentisate solanesyltransferase activity	0.00E+00
9	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
10	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
11	GO:0004519: endonuclease activity	6.13E-05
12	GO:0001872: (1->3)-beta-D-glucan binding	1.01E-04
13	GO:0005528: FK506 binding	4.18E-04
14	GO:0052381: tRNA dimethylallyltransferase activity	5.75E-04
15	GO:0004832: valine-tRNA ligase activity	5.75E-04
16	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	5.75E-04
17	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	5.75E-04
18	GO:0050139: nicotinate-N-glucosyltransferase activity	5.75E-04
19	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.75E-04
20	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.75E-04
21	GO:0005227: calcium activated cation channel activity	5.75E-04
22	GO:0004425: indole-3-glycerol-phosphate synthase activity	5.75E-04
23	GO:0042834: peptidoglycan binding	5.75E-04
24	GO:0004134: 4-alpha-glucanotransferase activity	5.75E-04
25	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.75E-04
26	GO:0050308: sugar-phosphatase activity	5.75E-04
27	GO:0019203: carbohydrate phosphatase activity	5.75E-04
28	GO:0017118: lipoyltransferase activity	1.24E-03
29	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.24E-03
30	GO:0043425: bHLH transcription factor binding	1.24E-03
31	GO:0016415: octanoyltransferase activity	1.24E-03
32	GO:0008493: tetracycline transporter activity	1.24E-03
33	GO:0004557: alpha-galactosidase activity	2.03E-03
34	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	2.03E-03
35	GO:0052692: raffinose alpha-galactosidase activity	2.03E-03
36	GO:0016765: transferase activity, transferring alkyl or aryl (other than methyl) groups	2.03E-03
37	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.03E-03
38	GO:0005504: fatty acid binding	2.03E-03
39	GO:0003913: DNA photolyase activity	2.03E-03
40	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	2.69E-03
41	GO:0052656: L-isoleucine transaminase activity	2.95E-03
42	GO:0016851: magnesium chelatase activity	2.95E-03
43	GO:0043023: ribosomal large subunit binding	2.95E-03
44	GO:0052654: L-leucine transaminase activity	2.95E-03
45	GO:0052655: L-valine transaminase activity	2.95E-03
46	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.95E-03
47	GO:0016149: translation release factor activity, codon specific	2.95E-03
48	GO:0016279: protein-lysine N-methyltransferase activity	3.97E-03
49	GO:0010011: auxin binding	3.97E-03
50	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.97E-03
51	GO:0045430: chalcone isomerase activity	3.97E-03
52	GO:0010328: auxin influx transmembrane transporter activity	3.97E-03
53	GO:0004084: branched-chain-amino-acid transaminase activity	3.97E-03
54	GO:0019199: transmembrane receptor protein kinase activity	3.97E-03
55	GO:0003989: acetyl-CoA carboxylase activity	5.10E-03
56	GO:0008725: DNA-3-methyladenine glycosylase activity	5.10E-03
57	GO:2001070: starch binding	6.33E-03
58	GO:0030983: mismatched DNA binding	6.33E-03
59	GO:0080030: methyl indole-3-acetate esterase activity	6.33E-03
60	GO:1990714: hydroxyproline O-galactosyltransferase activity	6.33E-03
61	GO:0004332: fructose-bisphosphate aldolase activity	6.33E-03
62	GO:0004709: MAP kinase kinase kinase activity	6.33E-03
63	GO:0004130: cytochrome-c peroxidase activity	6.33E-03
64	GO:0016688: L-ascorbate peroxidase activity	6.33E-03
65	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	6.81E-03
66	GO:0004017: adenylate kinase activity	7.65E-03
67	GO:0016832: aldehyde-lyase activity	7.65E-03
68	GO:0009881: photoreceptor activity	9.06E-03
69	GO:0051015: actin filament binding	1.06E-02
70	GO:0003723: RNA binding	1.14E-02
71	GO:0003724: RNA helicase activity	1.21E-02
72	GO:0008173: RNA methyltransferase activity	1.21E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	1.30E-02
74	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.38E-02
75	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.38E-02
76	GO:0003747: translation release factor activity	1.38E-02
77	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	1.53E-02
78	GO:0030247: polysaccharide binding	1.59E-02
79	GO:0004721: phosphoprotein phosphatase activity	1.59E-02
80	GO:0004805: trehalose-phosphatase activity	1.73E-02
81	GO:0044183: protein binding involved in protein folding	1.92E-02
82	GO:0004161: dimethylallyltranstransferase activity	1.92E-02
83	GO:0005089: Rho guanyl-nucleotide exchange factor activity	1.92E-02
84	GO:0052689: carboxylic ester hydrolase activity	2.03E-02
85	GO:0005262: calcium channel activity	2.32E-02
86	GO:0015266: protein channel activity	2.32E-02
87	GO:0004674: protein serine/threonine kinase activity	2.33E-02
88	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.36E-02
89	GO:0004871: signal transducer activity	2.45E-02
90	GO:0008266: poly(U) RNA binding	2.53E-02
91	GO:0003774: motor activity	2.53E-02
92	GO:0003712: transcription cofactor activity	2.74E-02
93	GO:0008146: sulfotransferase activity	2.74E-02
94	GO:0005524: ATP binding	2.91E-02
95	GO:0043621: protein self-association	3.12E-02
96	GO:0051536: iron-sulfur cluster binding	3.19E-02
97	GO:0031418: L-ascorbic acid binding	3.19E-02
98	GO:0009055: electron carrier activity	3.44E-02
99	GO:0004176: ATP-dependent peptidase activity	3.66E-02
100	GO:0033612: receptor serine/threonine kinase binding	3.66E-02
101	GO:0016298: lipase activity	4.02E-02
102	GO:0008810: cellulase activity	4.15E-02
103	GO:0003777: microtubule motor activity	4.29E-02
104	GO:0015171: amino acid transmembrane transporter activity	4.29E-02
105	GO:0003727: single-stranded RNA binding	4.41E-02
106	GO:0004812: aminoacyl-tRNA ligase activity	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	1.14E-12
3	GO:0009570: chloroplast stroma	5.98E-08
4	GO:0009941: chloroplast envelope	1.21E-06
5	GO:0046658: anchored component of plasma membrane	1.36E-04
6	GO:0009534: chloroplast thylakoid	1.36E-04
7	GO:0009986: cell surface	6.32E-04
8	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.24E-03
9	GO:0009317: acetyl-CoA carboxylase complex	2.03E-03
10	GO:0009528: plastid inner membrane	2.03E-03
11	GO:0010007: magnesium chelatase complex	2.03E-03
12	GO:0030139: endocytic vesicle	2.03E-03
13	GO:0031225: anchored component of membrane	2.74E-03
14	GO:0032585: multivesicular body membrane	2.95E-03
15	GO:0032432: actin filament bundle	2.95E-03
16	GO:0009543: chloroplast thylakoid lumen	3.96E-03
17	GO:0009527: plastid outer membrane	3.97E-03
18	GO:0009526: plastid envelope	3.97E-03
19	GO:0031969: chloroplast membrane	4.92E-03
20	GO:0055035: plastid thylakoid membrane	5.10E-03
21	GO:0015629: actin cytoskeleton	5.42E-03
22	GO:0009535: chloroplast thylakoid membrane	6.09E-03
23	GO:0042807: central vacuole	9.06E-03
24	GO:0009501: amyloplast	1.06E-02
25	GO:0010319: stromule	1.20E-02
26	GO:0000326: protein storage vacuole	1.21E-02
27	GO:0010494: cytoplasmic stress granule	1.38E-02
28	GO:0005886: plasma membrane	1.70E-02
29	GO:0016459: myosin complex	1.73E-02
30	GO:0005884: actin filament	1.92E-02
31	GO:0000311: plastid large ribosomal subunit	2.12E-02
32	GO:0005578: proteinaceous extracellular matrix	2.32E-02
33	GO:0009508: plastid chromosome	2.32E-02
34	GO:0030095: chloroplast photosystem II	2.53E-02
35	GO:0031977: thylakoid lumen	2.66E-02
36	GO:0043234: protein complex	2.96E-02
37	GO:0009654: photosystem II oxygen evolving complex	3.42E-02
38	GO:0042651: thylakoid membrane	3.42E-02
39	GO:0043231: intracellular membrane-bounded organelle	3.58E-02
40	GO:0009532: plastid stroma	3.66E-02
41	GO:0005744: mitochondrial inner membrane presequence translocase complex	4.41E-02
42	GO:0005871: kinesin complex	4.67E-02