co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G23690

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0090071: negative regulation of ribosome biogenesis	0.00E+00
2	GO:0017038: protein import	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:1903224: regulation of endodermal cell differentiation	0.00E+00
5	GO:0007638: mechanosensory behavior	0.00E+00
6	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
7	GO:0080127: fruit septum development	0.00E+00
8	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
9	GO:0045184: establishment of protein localization	0.00E+00
10	GO:0070125: mitochondrial translational elongation	0.00E+00
11	GO:0031222: arabinan catabolic process	0.00E+00
12	GO:0061157: mRNA destabilization	0.00E+00
13	GO:0043392: negative regulation of DNA binding	0.00E+00
14	GO:0010081: regulation of inflorescence meristem growth	0.00E+00
15	GO:0046620: regulation of organ growth	1.70E-06
16	GO:0040008: regulation of growth	1.48E-04
17	GO:1900865: chloroplast RNA modification	1.62E-04
18	GO:0009733: response to auxin	3.60E-04
19	GO:0016123: xanthophyll biosynthetic process	3.81E-04
20	GO:0016554: cytidine to uridine editing	5.30E-04
21	GO:0048509: regulation of meristem development	7.00E-04
22	GO:0030488: tRNA methylation	7.00E-04
23	GO:0000025: maltose catabolic process	7.28E-04
24	GO:0006285: base-excision repair, AP site formation	7.28E-04
25	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	7.28E-04
26	GO:0090558: plant epidermis development	7.28E-04
27	GO:0043266: regulation of potassium ion transport	7.28E-04
28	GO:0046520: sphingoid biosynthetic process	7.28E-04
29	GO:0010480: microsporocyte differentiation	7.28E-04
30	GO:0010080: regulation of floral meristem growth	7.28E-04
31	GO:2000021: regulation of ion homeostasis	7.28E-04
32	GO:0035987: endodermal cell differentiation	7.28E-04
33	GO:1902458: positive regulation of stomatal opening	7.28E-04
34	GO:0015904: tetracycline transport	7.28E-04
35	GO:0034757: negative regulation of iron ion transport	7.28E-04
36	GO:0042659: regulation of cell fate specification	7.28E-04
37	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.48E-04
38	GO:2000070: regulation of response to water deprivation	1.11E-03
39	GO:0009734: auxin-activated signaling pathway	1.29E-03
40	GO:0010497: plasmodesmata-mediated intercellular transport	1.35E-03
41	GO:0048255: mRNA stabilization	1.57E-03
42	GO:0010271: regulation of chlorophyll catabolic process	1.57E-03
43	GO:0018026: peptidyl-lysine monomethylation	1.57E-03
44	GO:0071497: cellular response to freezing	1.57E-03
45	GO:1900033: negative regulation of trichome patterning	1.57E-03
46	GO:0080009: mRNA methylation	1.57E-03
47	GO:0009786: regulation of asymmetric cell division	1.57E-03
48	GO:0031648: protein destabilization	1.57E-03
49	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.57E-03
50	GO:0006568: tryptophan metabolic process	1.57E-03
51	GO:2000123: positive regulation of stomatal complex development	1.57E-03
52	GO:0010024: phytochromobilin biosynthetic process	1.57E-03
53	GO:0010182: sugar mediated signaling pathway	1.59E-03
54	GO:0000373: Group II intron splicing	1.62E-03
55	GO:0009098: leucine biosynthetic process	1.92E-03
56	GO:0031425: chloroplast RNA processing	1.92E-03
57	GO:0009641: shade avoidance	2.25E-03
58	GO:0010583: response to cyclopentenone	2.27E-03
59	GO:0032502: developmental process	2.27E-03
60	GO:0080117: secondary growth	2.60E-03
61	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	2.60E-03
62	GO:0006788: heme oxidation	2.60E-03
63	GO:0010022: meristem determinacy	2.60E-03
64	GO:0071398: cellular response to fatty acid	2.60E-03
65	GO:0033591: response to L-ascorbic acid	2.60E-03
66	GO:0090708: specification of plant organ axis polarity	2.60E-03
67	GO:0005983: starch catabolic process	2.99E-03
68	GO:0010582: floral meristem determinacy	2.99E-03
69	GO:0009451: RNA modification	3.07E-03
70	GO:0009909: regulation of flower development	3.32E-03
71	GO:0010027: thylakoid membrane organization	3.36E-03
72	GO:0009725: response to hormone	3.40E-03
73	GO:0010306: rhamnogalacturonan II biosynthetic process	3.78E-03
74	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	3.78E-03
75	GO:0046739: transport of virus in multicellular host	3.78E-03
76	GO:1990019: protein storage vacuole organization	3.78E-03
77	GO:0016556: mRNA modification	3.78E-03
78	GO:0010371: regulation of gibberellin biosynthetic process	3.78E-03
79	GO:0051513: regulation of monopolar cell growth	3.78E-03
80	GO:0007231: osmosensory signaling pathway	3.78E-03
81	GO:0009102: biotin biosynthetic process	3.78E-03
82	GO:0034059: response to anoxia	3.78E-03
83	GO:0030104: water homeostasis	5.10E-03
84	GO:0033500: carbohydrate homeostasis	5.10E-03
85	GO:2000038: regulation of stomatal complex development	5.10E-03
86	GO:0008295: spermidine biosynthetic process	5.10E-03
87	GO:0009755: hormone-mediated signaling pathway	5.10E-03
88	GO:1901141: regulation of lignin biosynthetic process	5.10E-03
89	GO:0048629: trichome patterning	5.10E-03
90	GO:0010109: regulation of photosynthesis	5.10E-03
91	GO:0042274: ribosomal small subunit biogenesis	5.10E-03
92	GO:0009765: photosynthesis, light harvesting	5.10E-03
93	GO:0016042: lipid catabolic process	5.61E-03
94	GO:0010431: seed maturation	6.52E-03
95	GO:0010375: stomatal complex patterning	6.57E-03
96	GO:0080110: sporopollenin biosynthetic process	6.57E-03
97	GO:0016120: carotene biosynthetic process	6.57E-03
98	GO:0045038: protein import into chloroplast thylakoid membrane	6.57E-03
99	GO:0045487: gibberellin catabolic process	6.57E-03
100	GO:0048497: maintenance of floral organ identity	6.57E-03
101	GO:0010438: cellular response to sulfur starvation	6.57E-03
102	GO:0030245: cellulose catabolic process	7.15E-03
103	GO:0071215: cellular response to abscisic acid stimulus	7.80E-03
104	GO:0006631: fatty acid metabolic process	8.01E-03
105	GO:0009913: epidermal cell differentiation	8.16E-03
106	GO:0010358: leaf shaping	8.16E-03
107	GO:1902456: regulation of stomatal opening	8.16E-03
108	GO:0042793: transcription from plastid promoter	8.16E-03
109	GO:0048831: regulation of shoot system development	8.16E-03
110	GO:0003006: developmental process involved in reproduction	8.16E-03
111	GO:0018258: protein O-linked glycosylation via hydroxyproline	8.16E-03
112	GO:0000741: karyogamy	8.16E-03
113	GO:0010405: arabinogalactan protein metabolic process	8.16E-03
114	GO:0009926: auxin polar transport	8.89E-03
115	GO:0042372: phylloquinone biosynthetic process	9.88E-03
116	GO:0009082: branched-chain amino acid biosynthetic process	9.88E-03
117	GO:0006458: 'de novo' protein folding	9.88E-03
118	GO:0017148: negative regulation of translation	9.88E-03
119	GO:0042026: protein refolding	9.88E-03
120	GO:2000033: regulation of seed dormancy process	9.88E-03
121	GO:0009099: valine biosynthetic process	9.88E-03
122	GO:0031930: mitochondria-nucleus signaling pathway	9.88E-03
123	GO:0009648: photoperiodism	9.88E-03
124	GO:2000067: regulation of root morphogenesis	9.88E-03
125	GO:0010087: phloem or xylem histogenesis	9.98E-03
126	GO:0006855: drug transmembrane transport	1.08E-02
127	GO:0009741: response to brassinosteroid	1.08E-02
128	GO:0048544: recognition of pollen	1.16E-02
129	GO:0048437: floral organ development	1.17E-02
130	GO:0010444: guard mother cell differentiation	1.17E-02
131	GO:0006955: immune response	1.17E-02
132	GO:0045892: negative regulation of transcription, DNA-templated	1.31E-02
133	GO:0000302: response to reactive oxygen species	1.34E-02
134	GO:0010439: regulation of glucosinolate biosynthetic process	1.37E-02
135	GO:0009819: drought recovery	1.37E-02
136	GO:0009690: cytokinin metabolic process	1.37E-02
137	GO:0006605: protein targeting	1.37E-02
138	GO:0009704: de-etiolation	1.37E-02
139	GO:0055075: potassium ion homeostasis	1.37E-02
140	GO:0000105: histidine biosynthetic process	1.37E-02
141	GO:1901657: glycosyl compound metabolic process	1.52E-02
142	GO:0007186: G-protein coupled receptor signaling pathway	1.57E-02
143	GO:0009657: plastid organization	1.57E-02
144	GO:0009097: isoleucine biosynthetic process	1.57E-02
145	GO:0015996: chlorophyll catabolic process	1.57E-02
146	GO:0009828: plant-type cell wall loosening	1.62E-02
147	GO:0006351: transcription, DNA-templated	1.71E-02
148	GO:0051865: protein autoubiquitination	1.79E-02
149	GO:0006098: pentose-phosphate shunt	1.79E-02
150	GO:0048507: meristem development	1.79E-02
151	GO:0009056: catabolic process	1.79E-02
152	GO:0009416: response to light stimulus	1.81E-02
153	GO:2000280: regulation of root development	2.01E-02
154	GO:0009638: phototropism	2.01E-02
155	GO:0009826: unidimensional cell growth	2.06E-02
156	GO:0009658: chloroplast organization	2.18E-02
157	GO:0009742: brassinosteroid mediated signaling pathway	2.20E-02
158	GO:0010162: seed dormancy process	2.25E-02
159	GO:0009299: mRNA transcription	2.25E-02
160	GO:0009870: defense response signaling pathway, resistance gene-dependent	2.25E-02
161	GO:0048829: root cap development	2.25E-02
162	GO:0016441: posttranscriptional gene silencing	2.25E-02
163	GO:0006816: calcium ion transport	2.49E-02
164	GO:0009773: photosynthetic electron transport in photosystem I	2.49E-02
165	GO:0009073: aromatic amino acid family biosynthetic process	2.49E-02
166	GO:0009682: induced systemic resistance	2.49E-02
167	GO:0006415: translational termination	2.49E-02
168	GO:0048229: gametophyte development	2.49E-02
169	GO:0010015: root morphogenesis	2.49E-02
170	GO:0000160: phosphorelay signal transduction system	2.67E-02
171	GO:0010105: negative regulation of ethylene-activated signaling pathway	2.75E-02
172	GO:0045037: protein import into chloroplast stroma	2.75E-02
173	GO:0048366: leaf development	2.77E-02
174	GO:0010588: cotyledon vascular tissue pattern formation	3.01E-02
175	GO:0030048: actin filament-based movement	3.01E-02
176	GO:0010628: positive regulation of gene expression	3.01E-02
177	GO:0010102: lateral root morphogenesis	3.01E-02
178	GO:0006006: glucose metabolic process	3.01E-02
179	GO:0009691: cytokinin biosynthetic process	3.01E-02
180	GO:0050826: response to freezing	3.01E-02
181	GO:0010075: regulation of meristem growth	3.01E-02
182	GO:0006094: gluconeogenesis	3.01E-02
183	GO:0009767: photosynthetic electron transport chain	3.01E-02
184	GO:0006865: amino acid transport	3.08E-02
185	GO:0009867: jasmonic acid mediated signaling pathway	3.22E-02
186	GO:0010207: photosystem II assembly	3.28E-02
187	GO:0009934: regulation of meristem structural organization	3.28E-02
188	GO:0048467: gynoecium development	3.28E-02
189	GO:0009790: embryo development	3.29E-02
190	GO:0090351: seedling development	3.56E-02
191	GO:0010030: positive regulation of seed germination	3.56E-02
192	GO:0070588: calcium ion transmembrane transport	3.56E-02
193	GO:0006071: glycerol metabolic process	3.85E-02
194	GO:0006833: water transport	3.85E-02
195	GO:0019762: glucosinolate catabolic process	3.85E-02
196	GO:0000162: tryptophan biosynthetic process	3.85E-02
197	GO:0080147: root hair cell development	4.14E-02
198	GO:0009640: photomorphogenesis	4.14E-02
199	GO:0005992: trehalose biosynthetic process	4.14E-02
200	GO:0051302: regulation of cell division	4.44E-02
201	GO:0019953: sexual reproduction	4.44E-02
202	GO:0009636: response to toxic substance	4.65E-02
203	GO:0061077: chaperone-mediated protein folding	4.75E-02
204	GO:0048278: vesicle docking	4.75E-02
205	GO:0016998: cell wall macromolecule catabolic process	4.75E-02
206	GO:0048511: rhythmic process	4.75E-02
207	GO:0007166: cell surface receptor signaling pathway	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
3	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
4	GO:0047661: amino-acid racemase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0015267: channel activity	0.00E+00
7	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
8	GO:0004076: biotin synthase activity	0.00E+00
9	GO:0001872: (1->3)-beta-D-glucan binding	1.51E-04
10	GO:0004519: endonuclease activity	6.95E-04
11	GO:0042834: peptidoglycan binding	7.28E-04
12	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	7.28E-04
13	GO:0004134: 4-alpha-glucanotransferase activity	7.28E-04
14	GO:0050308: sugar-phosphatase activity	7.28E-04
15	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	7.28E-04
16	GO:0019203: carbohydrate phosphatase activity	7.28E-04
17	GO:0052381: tRNA dimethylallyltransferase activity	7.28E-04
18	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	7.28E-04
19	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	7.28E-04
20	GO:0010012: steroid 22-alpha hydroxylase activity	7.28E-04
21	GO:0000170: sphingosine hydroxylase activity	7.28E-04
22	GO:0050139: nicotinate-N-glucosyltransferase activity	7.28E-04
23	GO:0047259: glucomannan 4-beta-mannosyltransferase activity	7.28E-04
24	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	7.28E-04
25	GO:0004425: indole-3-glycerol-phosphate synthase activity	7.28E-04
26	GO:0042284: sphingolipid delta-4 desaturase activity	1.57E-03
27	GO:0008493: tetracycline transporter activity	1.57E-03
28	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.57E-03
29	GO:0009884: cytokinin receptor activity	1.57E-03
30	GO:0003852: 2-isopropylmalate synthase activity	1.57E-03
31	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.57E-03
32	GO:0043425: bHLH transcription factor binding	1.57E-03
33	GO:0010296: prenylcysteine methylesterase activity	1.57E-03
34	GO:0004766: spermidine synthase activity	1.57E-03
35	GO:0070330: aromatase activity	2.60E-03
36	GO:0003913: DNA photolyase activity	2.60E-03
37	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	2.60E-03
38	GO:0005034: osmosensor activity	2.60E-03
39	GO:0015462: ATPase-coupled protein transmembrane transporter activity	2.60E-03
40	GO:0003723: RNA binding	2.80E-03
41	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	3.78E-03
42	GO:0016149: translation release factor activity, codon specific	3.78E-03
43	GO:0052656: L-isoleucine transaminase activity	3.78E-03
44	GO:0016851: magnesium chelatase activity	3.78E-03
45	GO:0043023: ribosomal large subunit binding	3.78E-03
46	GO:0052654: L-leucine transaminase activity	3.78E-03
47	GO:0052655: L-valine transaminase activity	3.78E-03
48	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	4.38E-03
49	GO:0015238: drug transmembrane transporter activity	5.04E-03
50	GO:0004084: branched-chain-amino-acid transaminase activity	5.10E-03
51	GO:0019199: transmembrane receptor protein kinase activity	5.10E-03
52	GO:0004392: heme oxygenase (decyclizing) activity	5.10E-03
53	GO:0046556: alpha-L-arabinofuranosidase activity	5.10E-03
54	GO:0016279: protein-lysine N-methyltransferase activity	5.10E-03
55	GO:0019104: DNA N-glycosylase activity	5.10E-03
56	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	5.10E-03
57	GO:0018685: alkane 1-monooxygenase activity	6.57E-03
58	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	6.57E-03
59	GO:0016788: hydrolase activity, acting on ester bonds	6.58E-03
60	GO:0008810: cellulase activity	7.80E-03
61	GO:0016208: AMP binding	8.16E-03
62	GO:0004130: cytochrome-c peroxidase activity	8.16E-03
63	GO:0016688: L-ascorbate peroxidase activity	8.16E-03
64	GO:2001070: starch binding	8.16E-03
65	GO:0080030: methyl indole-3-acetate esterase activity	8.16E-03
66	GO:1990714: hydroxyproline O-galactosyltransferase activity	8.16E-03
67	GO:0004332: fructose-bisphosphate aldolase activity	8.16E-03
68	GO:0004709: MAP kinase kinase kinase activity	8.16E-03
69	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	9.88E-03
70	GO:0051753: mannan synthase activity	9.88E-03
71	GO:0016832: aldehyde-lyase activity	9.88E-03
72	GO:0019900: kinase binding	9.88E-03
73	GO:0052689: carboxylic ester hydrolase activity	1.11E-02
74	GO:0016298: lipase activity	1.36E-02
75	GO:0008173: RNA methyltransferase activity	1.57E-02
76	GO:0003724: RNA helicase activity	1.57E-02
77	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.79E-02
78	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	1.79E-02
79	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.79E-02
80	GO:0003747: translation release factor activity	1.79E-02
81	GO:0004673: protein histidine kinase activity	2.25E-02
82	GO:0004805: trehalose-phosphatase activity	2.25E-02
83	GO:0030234: enzyme regulator activity	2.25E-02
84	GO:0015020: glucuronosyltransferase activity	2.25E-02
85	GO:0102483: scopolin beta-glucosidase activity	2.29E-02
86	GO:0030247: polysaccharide binding	2.29E-02
87	GO:0044183: protein binding involved in protein folding	2.49E-02
88	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	2.80E-02
89	GO:0031072: heat shock protein binding	3.01E-02
90	GO:0000155: phosphorelay sensor kinase activity	3.01E-02
91	GO:0005262: calcium channel activity	3.01E-02
92	GO:0030246: carbohydrate binding	3.16E-02
93	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	3.19E-02
94	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	3.28E-02
95	GO:0008266: poly(U) RNA binding	3.28E-02
96	GO:0003774: motor activity	3.28E-02
97	GO:0008422: beta-glucosidase activity	3.51E-02
98	GO:0003712: transcription cofactor activity	3.56E-02
99	GO:0008146: sulfotransferase activity	3.56E-02
100	GO:0051539: 4 iron, 4 sulfur cluster binding	3.67E-02
101	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.71E-02
102	GO:0015297: antiporter activity	3.82E-02
103	GO:0005528: FK506 binding	4.14E-02
104	GO:0051536: iron-sulfur cluster binding	4.14E-02
105	GO:0031418: L-ascorbic acid binding	4.14E-02
106	GO:0004871: signal transducer activity	4.16E-02
107	GO:0042803: protein homodimerization activity	4.16E-02
108	GO:0043424: protein histidine kinase binding	4.44E-02
109	GO:0005345: purine nucleobase transmembrane transporter activity	4.44E-02
110	GO:0043621: protein self-association	4.48E-02
111	GO:0035091: phosphatidylinositol binding	4.48E-02
112	GO:0004176: ATP-dependent peptidase activity	4.75E-02
113	GO:0033612: receptor serine/threonine kinase binding	4.75E-02
114	GO:0003964: RNA-directed DNA polymerase activity	4.75E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009507: chloroplast	1.30E-04
3	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.57E-03
4	GO:0010007: magnesium chelatase complex	2.60E-03
5	GO:0030139: endocytic vesicle	2.60E-03
6	GO:0009528: plastid inner membrane	2.60E-03
7	GO:0009508: plastid chromosome	3.40E-03
8	GO:0005578: proteinaceous extracellular matrix	3.40E-03
9	GO:0009534: chloroplast thylakoid	3.55E-03
10	GO:0032585: multivesicular body membrane	3.78E-03
11	GO:0046658: anchored component of plasma membrane	4.84E-03
12	GO:0009544: chloroplast ATP synthase complex	5.10E-03
13	GO:0009527: plastid outer membrane	5.10E-03
14	GO:0009570: chloroplast stroma	5.65E-03
15	GO:0009654: photosystem II oxygen evolving complex	5.92E-03
16	GO:0031225: anchored component of membrane	6.49E-03
17	GO:0009986: cell surface	1.17E-02
18	GO:0019898: extrinsic component of membrane	1.25E-02
19	GO:0048226: Casparian strip	1.37E-02
20	GO:0009501: amyloplast	1.37E-02
21	GO:0009295: nucleoid	1.73E-02
22	GO:0010319: stromule	1.73E-02
23	GO:0042644: chloroplast nucleoid	1.79E-02
24	GO:0010494: cytoplasmic stress granule	1.79E-02
25	GO:0016459: myosin complex	2.25E-02
26	GO:0009707: chloroplast outer membrane	2.54E-02
27	GO:0009941: chloroplast envelope	2.84E-02
28	GO:0031969: chloroplast membrane	2.99E-02
29	GO:0030095: chloroplast photosystem II	3.28E-02
30	GO:0005886: plasma membrane	3.94E-02
31	GO:0009532: plastid stroma	4.75E-02