co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G23560

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0002949: tRNA threonylcarbamoyladenosine modification	0.00E+00
3	GO:0070921: regulation of production of siRNA involved in chromatin silencing by small RNA	0.00E+00
4	GO:0080127: fruit septum development	0.00E+00
5	GO:0032212: positive regulation of telomere maintenance via telomerase	0.00E+00
6	GO:0032206: positive regulation of telomere maintenance	0.00E+00
7	GO:0006907: pinocytosis	0.00E+00
8	GO:0070125: mitochondrial translational elongation	0.00E+00
9	GO:0019478: D-amino acid catabolic process	5.18E-04
10	GO:0043686: co-translational protein modification	5.18E-04
11	GO:0043087: regulation of GTPase activity	5.18E-04
12	GO:0034757: negative regulation of iron ion transport	5.18E-04
13	GO:0000105: histidine biosynthetic process	6.75E-04
14	GO:0009958: positive gravitropism	8.32E-04
15	GO:0000373: Group II intron splicing	9.82E-04
16	GO:0010271: regulation of chlorophyll catabolic process	1.11E-03
17	GO:0001736: establishment of planar polarity	1.11E-03
18	GO:0009786: regulation of asymmetric cell division	1.11E-03
19	GO:0031648: protein destabilization	1.11E-03
20	GO:0010024: phytochromobilin biosynthetic process	1.11E-03
21	GO:0010583: response to cyclopentenone	1.18E-03
22	GO:0048829: root cap development	1.35E-03
23	GO:0010582: floral meristem determinacy	1.79E-03
24	GO:0080117: secondary growth	1.82E-03
25	GO:0030029: actin filament-based process	1.82E-03
26	GO:0045910: negative regulation of DNA recombination	1.82E-03
27	GO:0051639: actin filament network formation	2.64E-03
28	GO:0034059: response to anoxia	2.64E-03
29	GO:0010239: chloroplast mRNA processing	2.64E-03
30	GO:0044211: CTP salvage	2.64E-03
31	GO:1990019: protein storage vacuole organization	2.64E-03
32	GO:0009800: cinnamic acid biosynthetic process	2.64E-03
33	GO:2000904: regulation of starch metabolic process	2.64E-03
34	GO:0051513: regulation of monopolar cell growth	2.64E-03
35	GO:0009102: biotin biosynthetic process	2.64E-03
36	GO:0008295: spermidine biosynthetic process	3.56E-03
37	GO:0044206: UMP salvage	3.56E-03
38	GO:0006021: inositol biosynthetic process	3.56E-03
39	GO:0009956: radial pattern formation	3.56E-03
40	GO:0009755: hormone-mediated signaling pathway	3.56E-03
41	GO:0051764: actin crosslink formation	3.56E-03
42	GO:0010438: cellular response to sulfur starvation	4.57E-03
43	GO:0010158: abaxial cell fate specification	4.57E-03
44	GO:0080110: sporopollenin biosynthetic process	4.57E-03
45	GO:0031365: N-terminal protein amino acid modification	4.57E-03
46	GO:0009107: lipoate biosynthetic process	4.57E-03
47	GO:0071215: cellular response to abscisic acid stimulus	4.62E-03
48	GO:0009451: RNA modification	5.25E-03
49	GO:0016554: cytidine to uridine editing	5.66E-03
50	GO:0009920: cell plate formation involved in plant-type cell wall biogenesis	5.66E-03
51	GO:0006559: L-phenylalanine catabolic process	5.66E-03
52	GO:0006206: pyrimidine nucleobase metabolic process	5.66E-03
53	GO:1902456: regulation of stomatal opening	5.66E-03
54	GO:0048831: regulation of shoot system development	5.66E-03
55	GO:0003006: developmental process involved in reproduction	5.66E-03
56	GO:0031930: mitochondria-nucleus signaling pathway	6.83E-03
57	GO:0048509: regulation of meristem development	6.83E-03
58	GO:0030488: tRNA methylation	6.83E-03
59	GO:0010019: chloroplast-nucleus signaling pathway	6.83E-03
60	GO:0000079: regulation of cyclin-dependent protein serine/threonine kinase activity	6.83E-03
61	GO:0009648: photoperiodism	6.83E-03
62	GO:0010050: vegetative phase change	8.09E-03
63	GO:0000082: G1/S transition of mitotic cell cycle	8.09E-03
64	GO:0010098: suspensor development	8.09E-03
65	GO:0010444: guard mother cell differentiation	8.09E-03
66	GO:0015693: magnesium ion transport	8.09E-03
67	GO:0009610: response to symbiotic fungus	8.09E-03
68	GO:0032502: developmental process	8.41E-03
69	GO:0009819: drought recovery	9.42E-03
70	GO:0010439: regulation of glucosinolate biosynthetic process	9.42E-03
71	GO:0009850: auxin metabolic process	9.42E-03
72	GO:0009690: cytokinin metabolic process	9.42E-03
73	GO:2000070: regulation of response to water deprivation	9.42E-03
74	GO:0009231: riboflavin biosynthetic process	9.42E-03
75	GO:0071482: cellular response to light stimulus	1.08E-02
76	GO:0007186: G-protein coupled receptor signaling pathway	1.08E-02
77	GO:0009657: plastid organization	1.08E-02
78	GO:0019430: removal of superoxide radicals	1.08E-02
79	GO:0032544: plastid translation	1.08E-02
80	GO:0051726: regulation of cell cycle	1.13E-02
81	GO:0048507: meristem development	1.23E-02
82	GO:0051865: protein autoubiquitination	1.23E-02
83	GO:0046916: cellular transition metal ion homeostasis	1.23E-02
84	GO:0009056: catabolic process	1.23E-02
85	GO:0009734: auxin-activated signaling pathway	1.33E-02
86	GO:0000723: telomere maintenance	1.38E-02
87	GO:1900865: chloroplast RNA modification	1.38E-02
88	GO:0016571: histone methylation	1.38E-02
89	GO:0016573: histone acetylation	1.38E-02
90	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.55E-02
91	GO:0006535: cysteine biosynthetic process from serine	1.55E-02
92	GO:0009641: shade avoidance	1.55E-02
93	GO:0006298: mismatch repair	1.55E-02
94	GO:0010192: mucilage biosynthetic process	1.55E-02
95	GO:0010311: lateral root formation	1.57E-02
96	GO:0000160: phosphorelay signal transduction system	1.57E-02
97	GO:0009682: induced systemic resistance	1.71E-02
98	GO:0009750: response to fructose	1.71E-02
99	GO:0016485: protein processing	1.71E-02
100	GO:0048765: root hair cell differentiation	1.71E-02
101	GO:0045892: negative regulation of transcription, DNA-templated	1.84E-02
102	GO:0006790: sulfur compound metabolic process	1.89E-02
103	GO:0045037: protein import into chloroplast stroma	1.89E-02
104	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.89E-02
105	GO:0009867: jasmonic acid mediated signaling pathway	1.90E-02
106	GO:0040008: regulation of growth	1.98E-02
107	GO:0010102: lateral root morphogenesis	2.07E-02
108	GO:0009691: cytokinin biosynthetic process	2.07E-02
109	GO:0048467: gynoecium development	2.25E-02
110	GO:0010020: chloroplast fission	2.25E-02
111	GO:0009933: meristem structural organization	2.25E-02
112	GO:0010207: photosystem II assembly	2.25E-02
113	GO:0010540: basipetal auxin transport	2.25E-02
114	GO:0009266: response to temperature stimulus	2.25E-02
115	GO:0006302: double-strand break repair	2.25E-02
116	GO:0009825: multidimensional cell growth	2.44E-02
117	GO:0080188: RNA-directed DNA methylation	2.44E-02
118	GO:0046854: phosphatidylinositol phosphorylation	2.44E-02
119	GO:0009926: auxin polar transport	2.45E-02
120	GO:0009744: response to sucrose	2.45E-02
121	GO:0042546: cell wall biogenesis	2.55E-02
122	GO:0000162: tryptophan biosynthetic process	2.64E-02
123	GO:0009833: plant-type primary cell wall biogenesis	2.64E-02
124	GO:0016310: phosphorylation	2.75E-02
125	GO:0009636: response to toxic substance	2.76E-02
126	GO:0009965: leaf morphogenesis	2.76E-02
127	GO:0030150: protein import into mitochondrial matrix	2.84E-02
128	GO:0006338: chromatin remodeling	2.84E-02
129	GO:0051017: actin filament bundle assembly	2.84E-02
130	GO:0005992: trehalose biosynthetic process	2.84E-02
131	GO:0019344: cysteine biosynthetic process	2.84E-02
132	GO:0006306: DNA methylation	3.26E-02
133	GO:0051321: meiotic cell cycle	3.26E-02
134	GO:0003333: amino acid transmembrane transport	3.26E-02
135	GO:0009736: cytokinin-activated signaling pathway	3.31E-02
136	GO:0035428: hexose transmembrane transport	3.48E-02
137	GO:0016226: iron-sulfur cluster assembly	3.48E-02
138	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.48E-02
139	GO:0009658: chloroplast organization	3.63E-02
140	GO:0009686: gibberellin biosynthetic process	3.70E-02
141	GO:0010082: regulation of root meristem growth	3.70E-02
142	GO:0009625: response to insect	3.70E-02
143	GO:0010584: pollen exine formation	3.93E-02
144	GO:0006284: base-excision repair	3.93E-02
145	GO:0042127: regulation of cell proliferation	3.93E-02
146	GO:0048316: seed development	4.03E-02
147	GO:0070417: cellular response to cold	4.16E-02
148	GO:0016117: carotenoid biosynthetic process	4.16E-02
149	GO:0008033: tRNA processing	4.40E-02
150	GO:0010087: phloem or xylem histogenesis	4.40E-02
151	GO:0010118: stomatal movement	4.40E-02
152	GO:0010305: leaf vascular tissue pattern formation	4.64E-02
153	GO:0010182: sugar mediated signaling pathway	4.64E-02
154	GO:0046323: glucose import	4.64E-02
155	GO:0009741: response to brassinosteroid	4.64E-02
156	GO:0048544: recognition of pollen	4.88E-02
157	GO:0007018: microtubule-based movement	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0050619: phytochromobilin:ferredoxin oxidoreductase activity	0.00E+00
2	GO:0004401: histidinol-phosphatase activity	0.00E+00
3	GO:0071633: dihydroceramidase activity	0.00E+00
4	GO:0008710: 8-amino-7-oxononanoate synthase activity	0.00E+00
5	GO:0061711: N(6)-L-threonylcarbamoyladenine synthase	0.00E+00
6	GO:0016636: oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor	0.00E+00
7	GO:0047793: cycloeucalenol cycloisomerase activity	0.00E+00
8	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
9	GO:0000906: 6,7-dimethyl-8-ribityllumazine synthase activity	0.00E+00
10	GO:0052834: inositol monophosphate phosphatase activity	0.00E+00
11	GO:0008805: carbon-monoxide oxygenase activity	1.18E-05
12	GO:0001872: (1->3)-beta-D-glucan binding	8.48E-05
13	GO:0042586: peptide deformylase activity	5.18E-04
14	GO:0052381: tRNA dimethylallyltransferase activity	5.18E-04
15	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	5.18E-04
16	GO:0010347: L-galactose-1-phosphate phosphatase activity	5.18E-04
17	GO:0004519: endonuclease activity	7.07E-04
18	GO:0052832: inositol monophosphate 3-phosphatase activity	1.11E-03
19	GO:0008934: inositol monophosphate 1-phosphatase activity	1.11E-03
20	GO:0052833: inositol monophosphate 4-phosphatase activity	1.11E-03
21	GO:0050736: O-malonyltransferase activity	1.11E-03
22	GO:0009884: cytokinin receptor activity	1.11E-03
23	GO:0050017: L-3-cyanoalanine synthase activity	1.11E-03
24	GO:0017118: lipoyltransferase activity	1.11E-03
25	GO:0010296: prenylcysteine methylesterase activity	1.11E-03
26	GO:0016415: octanoyltransferase activity	1.11E-03
27	GO:0004047: aminomethyltransferase activity	1.11E-03
28	GO:0004766: spermidine synthase activity	1.11E-03
29	GO:0045548: phenylalanine ammonia-lyase activity	1.82E-03
30	GO:0005034: osmosensor activity	1.82E-03
31	GO:0016707: gibberellin 3-beta-dioxygenase activity	1.82E-03
32	GO:0016301: kinase activity	1.88E-03
33	GO:0005096: GTPase activator activity	2.59E-03
34	GO:0043047: single-stranded telomeric DNA binding	2.64E-03
35	GO:0010328: auxin influx transmembrane transporter activity	3.56E-03
36	GO:0019199: transmembrane receptor protein kinase activity	3.56E-03
37	GO:0004845: uracil phosphoribosyltransferase activity	3.56E-03
38	GO:0010011: auxin binding	3.56E-03
39	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.57E-03
40	GO:0008725: DNA-3-methyladenine glycosylase activity	4.57E-03
41	GO:0043621: protein self-association	5.04E-03
42	GO:0042803: protein homodimerization activity	5.52E-03
43	GO:0004709: MAP kinase kinase kinase activity	5.66E-03
44	GO:0004784: superoxide dismutase activity	5.66E-03
45	GO:0030983: mismatched DNA binding	5.66E-03
46	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	6.36E-03
47	GO:0003723: RNA binding	6.67E-03
48	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	6.83E-03
49	GO:0016832: aldehyde-lyase activity	6.83E-03
50	GO:0004849: uridine kinase activity	6.83E-03
51	GO:0019900: kinase binding	6.83E-03
52	GO:0004124: cysteine synthase activity	6.83E-03
53	GO:0042162: telomeric DNA binding	8.09E-03
54	GO:0005200: structural constituent of cytoskeleton	1.02E-02
55	GO:0046914: transition metal ion binding	1.08E-02
56	GO:0030247: polysaccharide binding	1.35E-02
57	GO:0004673: protein histidine kinase activity	1.55E-02
58	GO:0004805: trehalose-phosphatase activity	1.55E-02
59	GO:0004222: metalloendopeptidase activity	1.65E-02
60	GO:0005525: GTP binding	1.72E-02
61	GO:0004871: signal transducer activity	1.92E-02
62	GO:0015266: protein channel activity	2.07E-02
63	GO:0015095: magnesium ion transmembrane transporter activity	2.07E-02
64	GO:0000155: phosphorelay sensor kinase activity	2.07E-02
65	GO:0009982: pseudouridine synthase activity	2.07E-02
66	GO:0008061: chitin binding	2.44E-02
67	GO:0003712: transcription cofactor activity	2.44E-02
68	GO:0003924: GTPase activity	2.45E-02
69	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	2.64E-02
70	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	2.64E-02
71	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	2.64E-02
72	GO:0016740: transferase activity	2.77E-02
73	GO:0008134: transcription factor binding	2.84E-02
74	GO:0051536: iron-sulfur cluster binding	2.84E-02
75	GO:0043424: protein histidine kinase binding	3.05E-02
76	GO:0051087: chaperone binding	3.05E-02
77	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	3.16E-02
78	GO:0003964: RNA-directed DNA polymerase activity	3.26E-02
79	GO:0008408: 3'-5' exonuclease activity	3.26E-02
80	GO:0016760: cellulose synthase (UDP-forming) activity	3.70E-02
81	GO:0010181: FMN binding	4.88E-02
82	GO:0005355: glucose transmembrane transporter activity	4.88E-02
83	GO:0050662: coenzyme binding	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0000408: EKC/KEOPS complex	0.00E+00
2	GO:0009537: proplastid	0.00E+00
3	GO:0009349: riboflavin synthase complex	0.00E+00
4	GO:0035452: extrinsic component of plastid membrane	0.00E+00
5	GO:0009507: chloroplast	2.24E-05
6	GO:0000791: euchromatin	5.18E-04
7	GO:0009986: cell surface	5.41E-04
8	GO:0005697: telomerase holoenzyme complex	1.11E-03
9	GO:0009513: etioplast	1.11E-03
10	GO:0030870: Mre11 complex	1.11E-03
11	GO:0009509: chromoplast	1.82E-03
12	GO:0030139: endocytic vesicle	1.82E-03
13	GO:0042646: plastid nucleoid	2.64E-03
14	GO:0032585: multivesicular body membrane	2.64E-03
15	GO:0032432: actin filament bundle	2.64E-03
16	GO:0000795: synaptonemal complex	4.57E-03
17	GO:0031305: integral component of mitochondrial inner membrane	9.42E-03
18	GO:0009501: amyloplast	9.42E-03
19	GO:0000784: nuclear chromosome, telomeric region	1.08E-02
20	GO:0046930: pore complex	1.08E-02
21	GO:0042644: chloroplast nucleoid	1.23E-02
22	GO:0009707: chloroplast outer membrane	1.50E-02
23	GO:0005886: plasma membrane	1.67E-02
24	GO:0005884: actin filament	1.71E-02
25	GO:0005759: mitochondrial matrix	1.87E-02
26	GO:0016602: CCAAT-binding factor complex	2.07E-02
27	GO:0009574: preprophase band	2.07E-02
28	GO:0030095: chloroplast photosystem II	2.25E-02
29	GO:0000419: DNA-directed RNA polymerase V complex	2.64E-02
30	GO:0046658: anchored component of plasma membrane	2.99E-02
31	GO:0009654: photosystem II oxygen evolving complex	3.05E-02
32	GO:0009570: chloroplast stroma	3.23E-02
33	GO:0015629: actin cytoskeleton	3.70E-02
34	GO:0005744: mitochondrial inner membrane presequence translocase complex	3.93E-02
35	GO:0005871: kinesin complex	4.16E-02