co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21650

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905157: positive regulation of photosynthesis	0.00E+00
2	GO:1902171: regulation of tocopherol cyclase activity	0.00E+00
3	GO:1901918: negative regulation of exoribonuclease activity	0.00E+00
4	GO:0033494: ferulate metabolic process	0.00E+00
5	GO:0016118: carotenoid catabolic process	0.00E+00
6	GO:0033614: chloroplast proton-transporting ATP synthase complex assembly	0.00E+00
7	GO:0046471: phosphatidylglycerol metabolic process	0.00E+00
8	GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process	0.00E+00
9	GO:0009773: photosynthetic electron transport in photosystem I	7.68E-07
10	GO:0015994: chlorophyll metabolic process	6.01E-05
11	GO:0015995: chlorophyll biosynthetic process	8.16E-05
12	GO:0034599: cellular response to oxidative stress	1.63E-04
13	GO:1901259: chloroplast rRNA processing	1.88E-04
14	GO:0010196: nonphotochemical quenching	2.45E-04
15	GO:0031998: regulation of fatty acid beta-oxidation	3.04E-04
16	GO:0010028: xanthophyll cycle	3.04E-04
17	GO:0034337: RNA folding	3.04E-04
18	GO:0006047: UDP-N-acetylglucosamine metabolic process	3.04E-04
19	GO:0080112: seed growth	3.04E-04
20	GO:0005980: glycogen catabolic process	3.04E-04
21	GO:0000476: maturation of 4.5S rRNA	3.04E-04
22	GO:0000967: rRNA 5'-end processing	3.04E-04
23	GO:0043953: protein transport by the Tat complex	3.04E-04
24	GO:1905039: carboxylic acid transmembrane transport	3.04E-04
25	GO:1905200: gibberellic acid transmembrane transport	3.04E-04
26	GO:0046467: membrane lipid biosynthetic process	3.04E-04
27	GO:0071277: cellular response to calcium ion	3.04E-04
28	GO:0065002: intracellular protein transmembrane transport	3.04E-04
29	GO:0080093: regulation of photorespiration	3.04E-04
30	GO:0019276: UDP-N-acetylgalactosamine metabolic process	3.04E-04
31	GO:0019252: starch biosynthetic process	3.65E-04
32	GO:0006098: pentose-phosphate shunt	4.57E-04
33	GO:1901657: glycosyl compound metabolic process	4.73E-04
34	GO:0005982: starch metabolic process	5.40E-04
35	GO:0010027: thylakoid membrane organization	6.42E-04
36	GO:0016122: xanthophyll metabolic process	6.66E-04
37	GO:0016121: carotene catabolic process	6.66E-04
38	GO:0034470: ncRNA processing	6.66E-04
39	GO:0080029: cellular response to boron-containing substance levels	6.66E-04
40	GO:0006898: receptor-mediated endocytosis	6.66E-04
41	GO:0016124: xanthophyll catabolic process	6.66E-04
42	GO:0071457: cellular response to ozone	6.66E-04
43	GO:0055114: oxidation-reduction process	7.10E-04
44	GO:0006094: gluconeogenesis	9.40E-04
45	GO:0010207: photosystem II assembly	1.06E-03
46	GO:0006048: UDP-N-acetylglucosamine biosynthetic process	1.08E-03
47	GO:0090391: granum assembly	1.08E-03
48	GO:0006696: ergosterol biosynthetic process	1.08E-03
49	GO:0015979: photosynthesis	1.15E-03
50	GO:0006636: unsaturated fatty acid biosynthetic process	1.31E-03
51	GO:0005975: carbohydrate metabolic process	1.37E-03
52	GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly	1.55E-03
53	GO:1902358: sulfate transmembrane transport	1.55E-03
54	GO:0045338: farnesyl diphosphate metabolic process	1.55E-03
55	GO:0006020: inositol metabolic process	1.55E-03
56	GO:0071484: cellular response to light intensity	1.55E-03
57	GO:0009152: purine ribonucleotide biosynthetic process	1.55E-03
58	GO:0046653: tetrahydrofolate metabolic process	1.55E-03
59	GO:0009052: pentose-phosphate shunt, non-oxidative branch	1.55E-03
60	GO:0071786: endoplasmic reticulum tubular network organization	1.55E-03
61	GO:0046713: borate transport	1.55E-03
62	GO:0009768: photosynthesis, light harvesting in photosystem I	1.60E-03
63	GO:0032259: methylation	1.67E-03
64	GO:0019748: secondary metabolic process	1.92E-03
65	GO:0071486: cellular response to high light intensity	2.07E-03
66	GO:0009765: photosynthesis, light harvesting	2.07E-03
67	GO:0006021: inositol biosynthetic process	2.07E-03
68	GO:0071483: cellular response to blue light	2.07E-03
69	GO:0010021: amylopectin biosynthetic process	2.07E-03
70	GO:0009306: protein secretion	2.28E-03
71	GO:0071493: cellular response to UV-B	2.65E-03
72	GO:0006656: phosphatidylcholine biosynthetic process	2.65E-03
73	GO:0006564: L-serine biosynthetic process	2.65E-03
74	GO:0009904: chloroplast accumulation movement	2.65E-03
75	GO:0006097: glyoxylate cycle	2.65E-03
76	GO:0006662: glycerol ether metabolic process	2.88E-03
77	GO:0042549: photosystem II stabilization	3.27E-03
78	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.27E-03
79	GO:1902456: regulation of stomatal opening	3.27E-03
80	GO:0009228: thiamine biosynthetic process	3.27E-03
81	GO:0010190: cytochrome b6f complex assembly	3.27E-03
82	GO:0046855: inositol phosphate dephosphorylation	3.27E-03
83	GO:0009643: photosynthetic acclimation	3.27E-03
84	GO:0010304: PSII associated light-harvesting complex II catabolic process	3.27E-03
85	GO:0032502: developmental process	3.79E-03
86	GO:0071333: cellular response to glucose stimulus	3.93E-03
87	GO:0009955: adaxial/abaxial pattern specification	3.93E-03
88	GO:0009903: chloroplast avoidance movement	3.93E-03
89	GO:1900056: negative regulation of leaf senescence	4.64E-03
90	GO:0008272: sulfate transport	4.64E-03
91	GO:0009769: photosynthesis, light harvesting in photosystem II	4.64E-03
92	GO:0009645: response to low light intensity stimulus	4.64E-03
93	GO:0016126: sterol biosynthetic process	5.13E-03
94	GO:0052543: callose deposition in cell wall	5.39E-03
95	GO:0019827: stem cell population maintenance	5.39E-03
96	GO:0005978: glycogen biosynthetic process	5.39E-03
97	GO:0009642: response to light intensity	5.39E-03
98	GO:0042255: ribosome assembly	5.39E-03
99	GO:0006353: DNA-templated transcription, termination	5.39E-03
100	GO:0070413: trehalose metabolism in response to stress	5.39E-03
101	GO:0009704: de-etiolation	5.39E-03
102	GO:0050821: protein stabilization	5.39E-03
103	GO:0015996: chlorophyll catabolic process	6.18E-03
104	GO:0019430: removal of superoxide radicals	6.18E-03
105	GO:0009657: plastid organization	6.18E-03
106	GO:0032544: plastid translation	6.18E-03
107	GO:0009821: alkaloid biosynthetic process	7.01E-03
108	GO:0090333: regulation of stomatal closure	7.01E-03
109	GO:0042761: very long-chain fatty acid biosynthetic process	7.87E-03
110	GO:0010380: regulation of chlorophyll biosynthetic process	7.87E-03
111	GO:0009641: shade avoidance	8.77E-03
112	GO:0015770: sucrose transport	9.71E-03
113	GO:0072593: reactive oxygen species metabolic process	9.71E-03
114	GO:0043085: positive regulation of catalytic activity	9.71E-03
115	GO:0006790: sulfur compound metabolic process	1.07E-02
116	GO:0010114: response to red light	1.10E-02
117	GO:0006810: transport	1.14E-02
118	GO:0018107: peptidyl-threonine phosphorylation	1.17E-02
119	GO:0030048: actin filament-based movement	1.17E-02
120	GO:0006108: malate metabolic process	1.17E-02
121	GO:0009266: response to temperature stimulus	1.27E-02
122	GO:0010143: cutin biosynthetic process	1.27E-02
123	GO:0007015: actin filament organization	1.27E-02
124	GO:0010223: secondary shoot formation	1.27E-02
125	GO:0046686: response to cadmium ion	1.28E-02
126	GO:0009901: anther dehiscence	1.38E-02
127	GO:0046854: phosphatidylinositol phosphorylation	1.38E-02
128	GO:0005992: trehalose biosynthetic process	1.60E-02
129	GO:0006096: glycolytic process	1.75E-02
130	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.82E-02
131	GO:0009269: response to desiccation	1.84E-02
132	GO:0016114: terpenoid biosynthetic process	1.84E-02
133	GO:0016226: iron-sulfur cluster assembly	1.96E-02
134	GO:0030433: ubiquitin-dependent ERAD pathway	1.96E-02
135	GO:0071215: cellular response to abscisic acid stimulus	2.09E-02
136	GO:0045454: cell redox homeostasis	2.19E-02
137	GO:0016117: carotenoid biosynthetic process	2.35E-02
138	GO:0000413: protein peptidyl-prolyl isomerization	2.48E-02
139	GO:0009741: response to brassinosteroid	2.62E-02
140	GO:0071472: cellular response to salt stress	2.62E-02
141	GO:0006520: cellular amino acid metabolic process	2.62E-02
142	GO:0009058: biosynthetic process	2.79E-02
143	GO:0009567: double fertilization forming a zygote and endosperm	3.49E-02
144	GO:0001666: response to hypoxia	3.95E-02
145	GO:0006906: vesicle fusion	4.27E-02
146	GO:0018298: protein-chromophore linkage	4.77E-02
147	GO:0000160: phosphorelay signal transduction system	4.94E-02
148	GO:0009813: flavonoid biosynthetic process	4.94E-02

Rank	GO Term	Adjusted P value
1	GO:0047668: amygdalin beta-glucosidase activity	0.00E+00
2	GO:0035798: 2-alkenal reductase (NADP+) activity	0.00E+00
3	GO:0080083: beta-gentiobiose beta-glucosidase activity	0.00E+00
4	GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity	0.00E+00
5	GO:0046422: violaxanthin de-epoxidase activity	0.00E+00
6	GO:0004567: beta-mannosidase activity	0.00E+00
7	GO:0052667: phosphomethylethanolamine N-methyltransferase activity	0.00E+00
8	GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors	0.00E+00
9	GO:0036361: racemase activity, acting on amino acids and derivatives	0.00E+00
10	GO:0033840: NDP-glucose-starch glucosyltransferase activity	0.00E+00
11	GO:0080082: esculin beta-glucosidase activity	0.00E+00
12	GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity	0.00E+00
13	GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives	0.00E+00
14	GO:0046408: chlorophyll synthetase activity	0.00E+00
15	GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	0.00E+00
16	GO:0004373: glycogen (starch) synthase activity	1.50E-05
17	GO:0009011: starch synthase activity	6.01E-05
18	GO:0004332: fructose-bisphosphate aldolase activity	1.37E-04
19	GO:0035671: enone reductase activity	3.04E-04
20	GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity	3.04E-04
21	GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity	3.04E-04
22	GO:0030794: (S)-coclaurine-N-methyltransferase activity	3.04E-04
23	GO:0080079: cellobiose glucosidase activity	3.04E-04
24	GO:1905201: gibberellin transmembrane transporter activity	3.04E-04
25	GO:0008184: glycogen phosphorylase activity	3.04E-04
26	GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity	3.04E-04
27	GO:0004645: phosphorylase activity	3.04E-04
28	GO:0034256: chlorophyll(ide) b reductase activity	3.04E-04
29	GO:0015168: glycerol transmembrane transporter activity	3.04E-04
30	GO:0045486: naringenin 3-dioxygenase activity	3.04E-04
31	GO:0009977: proton motive force dependent protein transmembrane transporter activity	6.66E-04
32	GO:0004617: phosphoglycerate dehydrogenase activity	6.66E-04
33	GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity	6.66E-04
34	GO:0052832: inositol monophosphate 3-phosphatase activity	6.66E-04
35	GO:0033201: alpha-1,4-glucan synthase activity	6.66E-04
36	GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity	6.66E-04
37	GO:0008934: inositol monophosphate 1-phosphatase activity	6.66E-04
38	GO:0018708: thiol S-methyltransferase activity	6.66E-04
39	GO:0052833: inositol monophosphate 4-phosphatase activity	6.66E-04
40	GO:0003844: 1,4-alpha-glucan branching enzyme activity	6.66E-04
41	GO:0019172: glyoxalase III activity	6.66E-04
42	GO:0004310: farnesyl-diphosphate farnesyltransferase activity	6.66E-04
43	GO:0000234: phosphoethanolamine N-methyltransferase activity	6.66E-04
44	GO:0047746: chlorophyllase activity	6.66E-04
45	GO:0042389: omega-3 fatty acid desaturase activity	6.66E-04
46	GO:0102483: scopolin beta-glucosidase activity	7.89E-04
47	GO:0004565: beta-galactosidase activity	9.40E-04
48	GO:0008864: formyltetrahydrofolate deformylase activity	1.08E-03
49	GO:0043169: cation binding	1.08E-03
50	GO:0050734: hydroxycinnamoyltransferase activity	1.08E-03
51	GO:0004751: ribose-5-phosphate isomerase activity	1.08E-03
52	GO:0016742: hydroxymethyl-, formyl- and related transferase activity	1.08E-03
53	GO:0031409: pigment binding	1.31E-03
54	GO:0008422: beta-glucosidase activity	1.34E-03
55	GO:0019201: nucleotide kinase activity	1.55E-03
56	GO:0016851: magnesium chelatase activity	1.55E-03
57	GO:0022890: inorganic cation transmembrane transporter activity	1.55E-03
58	GO:0046715: borate transmembrane transporter activity	1.55E-03
59	GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	2.07E-03
60	GO:0015204: urea transmembrane transporter activity	2.07E-03
61	GO:0003727: single-stranded RNA binding	2.28E-03
62	GO:0047134: protein-disulfide reductase activity	2.47E-03
63	GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity	2.65E-03
64	GO:0008168: methyltransferase activity	2.76E-03
65	GO:0004791: thioredoxin-disulfide reductase activity	3.09E-03
66	GO:0004784: superoxide dismutase activity	3.27E-03
67	GO:0004462: lactoylglutathione lyase activity	3.27E-03
68	GO:0016615: malate dehydrogenase activity	3.27E-03
69	GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity	3.93E-03
70	GO:0004017: adenylate kinase activity	3.93E-03
71	GO:0030060: L-malate dehydrogenase activity	3.93E-03
72	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	4.04E-03
73	GO:0019843: rRNA binding	5.05E-03
74	GO:0016168: chlorophyll binding	5.42E-03
75	GO:0008271: secondary active sulfate transmembrane transporter activity	6.18E-03
76	GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	6.18E-03
77	GO:0071949: FAD binding	7.01E-03
78	GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity	7.87E-03
79	GO:0016844: strictosidine synthase activity	7.87E-03
80	GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds	8.02E-03
81	GO:0008047: enzyme activator activity	8.77E-03
82	GO:0016491: oxidoreductase activity	9.25E-03
83	GO:0047372: acylglycerol lipase activity	9.71E-03
84	GO:0015386: potassium:proton antiporter activity	9.71E-03
85	GO:0008515: sucrose transmembrane transporter activity	9.71E-03
86	GO:0015116: sulfate transmembrane transporter activity	1.07E-02
87	GO:0004185: serine-type carboxypeptidase activity	1.10E-02
88	GO:0031072: heat shock protein binding	1.17E-02
89	GO:0003725: double-stranded RNA binding	1.17E-02
90	GO:0004022: alcohol dehydrogenase (NAD) activity	1.17E-02
91	GO:0003774: motor activity	1.27E-02
92	GO:0042973: glucan endo-1,3-beta-D-glucosidase activity	1.27E-02
93	GO:0051119: sugar transmembrane transporter activity	1.38E-02
94	GO:0051536: iron-sulfur cluster binding	1.60E-02
95	GO:0031418: L-ascorbic acid binding	1.60E-02
96	GO:0015079: potassium ion transmembrane transporter activity	1.72E-02
97	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	1.81E-02
98	GO:0016779: nucleotidyltransferase activity	1.96E-02
99	GO:0015035: protein disulfide oxidoreductase activity	2.18E-02
100	GO:0003756: protein disulfide isomerase activity	2.22E-02
101	GO:0015299: solute:proton antiporter activity	2.76E-02
102	GO:0048038: quinone binding	3.04E-02
103	GO:0000156: phosphorelay response regulator activity	3.33E-02
104	GO:0016791: phosphatase activity	3.49E-02
105	GO:0016597: amino acid binding	3.79E-02
106	GO:0015250: water channel activity	3.95E-02
107	GO:0003743: translation initiation factor activity	4.26E-02
108	GO:0008236: serine-type peptidase activity	4.60E-02
109	GO:0042802: identical protein binding	4.62E-02
110	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	4.77E-02

Rank	GO Term	Adjusted P value
1	GO:0042579: microbody	0.00E+00
2	GO:0043235: receptor complex	0.00E+00
3	GO:0009507: chloroplast	3.92E-30
4	GO:0009534: chloroplast thylakoid	2.51E-21
5	GO:0009535: chloroplast thylakoid membrane	1.95E-18
6	GO:0009579: thylakoid	3.14E-09
7	GO:0009941: chloroplast envelope	1.48E-08
8	GO:0009570: chloroplast stroma	3.42E-08
9	GO:0010287: plastoglobule	1.32E-05
10	GO:0033281: TAT protein transport complex	1.50E-05
11	GO:0009543: chloroplast thylakoid lumen	1.54E-05
12	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	1.63E-05
13	GO:0031977: thylakoid lumen	1.71E-05
14	GO:0031969: chloroplast membrane	2.63E-05
15	GO:0031361: integral component of thylakoid membrane	3.04E-04
16	GO:0009515: granal stacked thylakoid	3.04E-04
17	GO:0009501: amyloplast	3.09E-04
18	GO:0009569: chloroplast starch grain	6.66E-04
19	GO:0010007: magnesium chelatase complex	1.08E-03
20	GO:0030076: light-harvesting complex	1.18E-03
21	GO:0071782: endoplasmic reticulum tubular network	1.55E-03
22	GO:0042651: thylakoid membrane	1.60E-03
23	GO:0009517: PSII associated light-harvesting complex II	2.07E-03
24	GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane	5.39E-03
25	GO:0031982: vesicle	5.39E-03
26	GO:0005763: mitochondrial small ribosomal subunit	7.01E-03
27	GO:0031901: early endosome membrane	7.01E-03
28	GO:0016459: myosin complex	8.77E-03
29	GO:0032040: small-subunit processome	1.07E-02
30	GO:0009508: plastid chromosome	1.17E-02
31	GO:0030095: chloroplast photosystem II	1.27E-02
32	GO:0009654: photosystem II oxygen evolving complex	1.72E-02
33	GO:0015935: small ribosomal subunit	1.84E-02
34	GO:0048046: apoplast	2.65E-02
35	GO:0005623: cell	2.72E-02
36	GO:0009522: photosystem I	2.76E-02
37	GO:0019898: extrinsic component of membrane	2.90E-02
38	GO:0009523: photosystem II	2.90E-02
39	GO:0010319: stromule	3.64E-02
40	GO:0009295: nucleoid	3.64E-02
41	GO:0005887: integral component of plasma membrane	4.15E-02