co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21385

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0006429: leucyl-tRNA aminoacylation	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0006849: plasma membrane pyruvate transport	0.00E+00
4	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
5	GO:0015742: alpha-ketoglutarate transport	0.00E+00
6	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
7	GO:0006642: triglyceride mobilization	0.00E+00
8	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
9	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
10	GO:1905157: positive regulation of photosynthesis	0.00E+00
11	GO:0009658: chloroplast organization	9.25E-08
12	GO:1901259: chloroplast rRNA processing	3.64E-05
13	GO:0006353: DNA-templated transcription, termination	6.41E-05
14	GO:0032544: plastid translation	8.11E-05
15	GO:0010027: thylakoid membrane organization	8.92E-05
16	GO:0010206: photosystem II repair	1.00E-04
17	GO:0034337: RNA folding	1.08E-04
18	GO:0005980: glycogen catabolic process	1.08E-04
19	GO:0046166: glyceraldehyde-3-phosphate biosynthetic process	1.08E-04
20	GO:0042371: vitamin K biosynthetic process	1.08E-04
21	GO:0043686: co-translational protein modification	1.08E-04
22	GO:0043007: maintenance of rDNA	1.08E-04
23	GO:0015995: chlorophyll biosynthetic process	1.13E-04
24	GO:0071452: cellular response to singlet oxygen	2.52E-04
25	GO:0019388: galactose catabolic process	2.52E-04
26	GO:0018026: peptidyl-lysine monomethylation	2.52E-04
27	GO:0090342: regulation of cell aging	2.52E-04
28	GO:0042325: regulation of phosphorylation	2.52E-04
29	GO:0006418: tRNA aminoacylation for protein translation	3.94E-04
30	GO:0032504: multicellular organism reproduction	4.19E-04
31	GO:0019563: glycerol catabolic process	4.19E-04
32	GO:0016050: vesicle organization	4.19E-04
33	GO:0015729: oxaloacetate transport	6.01E-04
34	GO:0010601: positive regulation of auxin biosynthetic process	6.01E-04
35	GO:0010731: protein glutathionylation	6.01E-04
36	GO:0046739: transport of virus in multicellular host	6.01E-04
37	GO:0009590: detection of gravity	6.01E-04
38	GO:0043572: plastid fission	6.01E-04
39	GO:0006814: sodium ion transport	7.52E-04
40	GO:0019676: ammonia assimilation cycle	7.98E-04
41	GO:0015743: malate transport	7.98E-04
42	GO:0022622: root system development	7.98E-04
43	GO:1901657: glycosyl compound metabolic process	9.72E-04
44	GO:0071423: malate transmembrane transport	1.01E-03
45	GO:0032543: mitochondrial translation	1.01E-03
46	GO:0010236: plastoquinone biosynthetic process	1.01E-03
47	GO:0031365: N-terminal protein amino acid modification	1.01E-03
48	GO:0000470: maturation of LSU-rRNA	1.23E-03
49	GO:0000741: karyogamy	1.23E-03
50	GO:0006086: acetyl-CoA biosynthetic process from pyruvate	1.23E-03
51	GO:0009643: photosynthetic acclimation	1.23E-03
52	GO:0010304: PSII associated light-harvesting complex II catabolic process	1.23E-03
53	GO:0010310: regulation of hydrogen peroxide metabolic process	1.47E-03
54	GO:0042372: phylloquinone biosynthetic process	1.47E-03
55	GO:0009772: photosynthetic electron transport in photosystem II	1.73E-03
56	GO:0048437: floral organ development	1.73E-03
57	GO:0032880: regulation of protein localization	1.73E-03
58	GO:0048564: photosystem I assembly	2.00E-03
59	GO:0005978: glycogen biosynthetic process	2.00E-03
60	GO:0042255: ribosome assembly	2.00E-03
61	GO:0010497: plasmodesmata-mediated intercellular transport	2.28E-03
62	GO:0009657: plastid organization	2.28E-03
63	GO:0046685: response to arsenic-containing substance	2.57E-03
64	GO:0046916: cellular transition metal ion homeostasis	2.57E-03
65	GO:0006783: heme biosynthetic process	2.57E-03
66	GO:0006508: proteolysis	2.67E-03
67	GO:0010205: photoinhibition	2.88E-03
68	GO:0009638: phototropism	2.88E-03
69	GO:0031425: chloroplast RNA processing	2.88E-03
70	GO:0010629: negative regulation of gene expression	3.20E-03
71	GO:0015979: photosynthesis	3.20E-03
72	GO:0006782: protoporphyrinogen IX biosynthetic process	3.20E-03
73	GO:0045036: protein targeting to chloroplast	3.20E-03
74	GO:0009773: photosynthetic electron transport in photosystem I	3.53E-03
75	GO:0006415: translational termination	3.53E-03
76	GO:0006820: anion transport	3.87E-03
77	GO:0006094: gluconeogenesis	4.23E-03
78	GO:2000012: regulation of auxin polar transport	4.23E-03
79	GO:0006006: glucose metabolic process	4.23E-03
80	GO:0009266: response to temperature stimulus	4.59E-03
81	GO:0010020: chloroplast fission	4.59E-03
82	GO:0019253: reductive pentose-phosphate cycle	4.59E-03
83	GO:0061077: chaperone-mediated protein folding	6.56E-03
84	GO:0006730: one-carbon metabolic process	6.99E-03
85	GO:0009790: embryo development	7.10E-03
86	GO:0009735: response to cytokinin	8.20E-03
87	GO:0008284: positive regulation of cell proliferation	8.32E-03
88	GO:0080022: primary root development	8.79E-03
89	GO:0009958: positive gravitropism	9.26E-03
90	GO:0006662: glycerol ether metabolic process	9.26E-03
91	GO:0010197: polar nucleus fusion	9.26E-03
92	GO:0019252: starch biosynthetic process	1.02E-02
93	GO:0009556: microsporogenesis	1.02E-02
94	GO:0005975: carbohydrate metabolic process	1.03E-02
95	GO:0030163: protein catabolic process	1.18E-02
96	GO:0009607: response to biotic stimulus	1.45E-02
97	GO:0009817: defense response to fungus, incompatible interaction	1.68E-02
98	GO:0048481: plant ovule development	1.68E-02
99	GO:0006499: N-terminal protein myristoylation	1.80E-02
100	GO:0048527: lateral root development	1.86E-02
101	GO:0045454: cell redox homeostasis	1.94E-02
102	GO:0009793: embryo development ending in seed dormancy	1.94E-02
103	GO:0034599: cellular response to oxidative stress	2.05E-02
104	GO:0030001: metal ion transport	2.18E-02
105	GO:0006412: translation	2.25E-02
106	GO:0016042: lipid catabolic process	2.32E-02
107	GO:0042538: hyperosmotic salinity response	2.80E-02
108	GO:0006364: rRNA processing	2.94E-02
109	GO:0009585: red, far-red light phototransduction	2.94E-02
110	GO:0006813: potassium ion transport	2.94E-02
111	GO:0006857: oligopeptide transport	3.09E-02
112	GO:0006096: glycolytic process	3.32E-02
113	GO:0009553: embryo sac development	3.70E-02
114	GO:0009624: response to nematode	3.78E-02
115	GO:0009742: brassinosteroid mediated signaling pathway	3.94E-02
116	GO:0035556: intracellular signal transduction	4.46E-02
117	GO:0042744: hydrogen peroxide catabolic process	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0015139: alpha-ketoglutarate transmembrane transporter activity	0.00E+00
2	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
3	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
4	GO:0004823: leucine-tRNA ligase activity	0.00E+00
5	GO:0002161: aminoacyl-tRNA editing activity	2.29E-06
6	GO:0008237: metallopeptidase activity	7.48E-05
7	GO:0019843: rRNA binding	8.51E-05
8	GO:0004807: triose-phosphate isomerase activity	1.08E-04
9	GO:0008184: glycogen phosphorylase activity	1.08E-04
10	GO:0004853: uroporphyrinogen decarboxylase activity	1.08E-04
11	GO:0042586: peptide deformylase activity	1.08E-04
12	GO:0004856: xylulokinase activity	1.08E-04
13	GO:0004645: phosphorylase activity	1.08E-04
14	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	1.08E-04
15	GO:0004222: metalloendopeptidase activity	1.52E-04
16	GO:0015367: oxoglutarate:malate antiporter activity	2.52E-04
17	GO:0016630: protochlorophyllide reductase activity	2.52E-04
18	GO:0004614: phosphoglucomutase activity	2.52E-04
19	GO:0004148: dihydrolipoyl dehydrogenase activity	4.19E-04
20	GO:0050833: pyruvate transmembrane transporter activity	4.19E-04
21	GO:0045174: glutathione dehydrogenase (ascorbate) activity	4.19E-04
22	GO:0004176: ATP-dependent peptidase activity	4.33E-04
23	GO:0008508: bile acid:sodium symporter activity	6.01E-04
24	GO:0016851: magnesium chelatase activity	6.01E-04
25	GO:0015131: oxaloacetate transmembrane transporter activity	6.01E-04
26	GO:0016149: translation release factor activity, codon specific	6.01E-04
27	GO:0022890: inorganic cation transmembrane transporter activity	6.01E-04
28	GO:0043023: ribosomal large subunit binding	6.01E-04
29	GO:0004812: aminoacyl-tRNA ligase activity	6.05E-04
30	GO:0004659: prenyltransferase activity	7.98E-04
31	GO:0016279: protein-lysine N-methyltransferase activity	7.98E-04
32	GO:0016773: phosphotransferase activity, alcohol group as acceptor	1.01E-03
33	GO:0003959: NADPH dehydrogenase activity	1.01E-03
34	GO:0004629: phospholipase C activity	1.23E-03
35	GO:0102483: scopolin beta-glucosidase activity	1.43E-03
36	GO:0004435: phosphatidylinositol phospholipase C activity	1.47E-03
37	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	1.47E-03
38	GO:0015140: malate transmembrane transporter activity	1.73E-03
39	GO:0008422: beta-glucosidase activity	2.17E-03
40	GO:0046914: transition metal ion binding	2.28E-03
41	GO:0071949: FAD binding	2.57E-03
42	GO:0003747: translation release factor activity	2.57E-03
43	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.97E-03
44	GO:0047372: acylglycerol lipase activity	3.53E-03
45	GO:0015386: potassium:proton antiporter activity	3.53E-03
46	GO:0008559: xenobiotic-transporting ATPase activity	3.53E-03
47	GO:0000049: tRNA binding	3.87E-03
48	GO:0005525: GTP binding	4.00E-03
49	GO:0019888: protein phosphatase regulator activity	4.23E-03
50	GO:0004089: carbonate dehydratase activity	4.23E-03
51	GO:0008083: growth factor activity	4.59E-03
52	GO:0005528: FK506 binding	5.75E-03
53	GO:0015079: potassium ion transmembrane transporter activity	6.15E-03
54	GO:0004252: serine-type endopeptidase activity	6.75E-03
55	GO:0016887: ATPase activity	7.73E-03
56	GO:0003727: single-stranded RNA binding	7.87E-03
57	GO:0047134: protein-disulfide reductase activity	8.32E-03
58	GO:0004791: thioredoxin-disulfide reductase activity	9.74E-03
59	GO:0015299: solute:proton antiporter activity	9.74E-03
60	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	1.18E-02
61	GO:0000287: magnesium ion binding	1.28E-02
62	GO:0008236: serine-type peptidase activity	1.62E-02
63	GO:0003723: RNA binding	1.64E-02
64	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	1.68E-02
65	GO:0004364: glutathione transferase activity	2.31E-02
66	GO:0003924: GTPase activity	2.39E-02
67	GO:0005215: transporter activity	2.55E-02
68	GO:0016298: lipase activity	3.02E-02
69	GO:0003690: double-stranded DNA binding	3.02E-02
70	GO:0016491: oxidoreductase activity	3.17E-02
71	GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups	3.39E-02
72	GO:0003729: mRNA binding	3.68E-02
73	GO:0015035: protein disulfide oxidoreductase activity	3.86E-02
74	GO:0030170: pyridoxal phosphate binding	4.78E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	5.67E-23
2	GO:0009570: chloroplast stroma	2.03E-17
3	GO:0009941: chloroplast envelope	9.18E-09
4	GO:0009534: chloroplast thylakoid	7.95E-07
5	GO:0009535: chloroplast thylakoid membrane	1.49E-06
6	GO:0031969: chloroplast membrane	5.20E-05
7	GO:0009706: chloroplast inner membrane	5.61E-05
8	GO:0009536: plastid	8.18E-05
9	GO:0009579: thylakoid	8.42E-05
10	GO:0010007: magnesium chelatase complex	4.19E-04
11	GO:0009543: chloroplast thylakoid lumen	8.04E-04
12	GO:0009840: chloroplastic endopeptidase Clp complex	1.47E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	2.57E-03
14	GO:0000159: protein phosphatase type 2A complex	3.53E-03
15	GO:0032040: small-subunit processome	3.87E-03
16	GO:0009508: plastid chromosome	4.23E-03
17	GO:0005840: ribosome	5.89E-03
18	GO:0015935: small ribosomal subunit	6.56E-03
19	GO:0009532: plastid stroma	6.56E-03
20	GO:0010319: stromule	1.28E-02
21	GO:0009295: nucleoid	1.28E-02
22	GO:0030529: intracellular ribonucleoprotein complex	1.39E-02
23	GO:0009707: chloroplast outer membrane	1.68E-02
24	GO:0000325: plant-type vacuole	1.86E-02
25	GO:0031977: thylakoid lumen	2.25E-02
26	GO:0005623: cell	4.52E-02