Gene type: Transcription factor Metabolic gene Others DE type: Up Down Slightly_up Slightly_down Mixeded Others

GO Enrichment Analysis of Co-expressed Genes with

AT2G21330

GO-BP
GO-MF
GO-CC
RankGO TermAdjusted P value
1GO:0033494: ferulate metabolic process0.00E+00
2GO:0042820: vitamin B6 catabolic process0.00E+00
3GO:0042821: pyridoxal biosynthetic process0.00E+00
4GO:0005996: monosaccharide metabolic process0.00E+00
5GO:0016118: carotenoid catabolic process0.00E+00
6GO:0046471: phosphatidylglycerol metabolic process0.00E+00
7GO:0009661: chromoplast organization0.00E+00
8GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process0.00E+00
9GO:1905157: positive regulation of photosynthesis0.00E+00
10GO:0015843: methylammonium transport0.00E+00
11GO:1902171: regulation of tocopherol cyclase activity0.00E+00
12GO:1901918: negative regulation of exoribonuclease activity0.00E+00
13GO:0033614: chloroplast proton-transporting ATP synthase complex assembly0.00E+00
14GO:0018131: oxazole or thiazole biosynthetic process0.00E+00
15GO:0009773: photosynthetic electron transport in photosystem I1.93E-08
16GO:0015979: photosynthesis9.37E-08
17GO:0010207: photosystem II assembly3.34E-06
18GO:0015995: chlorophyll biosynthetic process8.73E-06
19GO:0055114: oxidation-reduction process1.72E-05
20GO:0032544: plastid translation1.78E-05
21GO:0090391: granum assembly2.05E-05
22GO:0010258: NADH dehydrogenase complex (plastoquinone) assembly4.51E-05
23GO:0006810: transport6.51E-05
24GO:0006636: unsaturated fatty acid biosynthetic process1.39E-04
25GO:0010190: cytochrome b6f complex assembly1.80E-04
26GO:0009228: thiamine biosynthetic process1.80E-04
27GO:0042549: photosystem II stabilization1.80E-04
28GO:0009768: photosynthesis, light harvesting in photosystem I1.86E-04
29GO:1901259: chloroplast rRNA processing2.44E-04
30GO:0010189: vitamin E biosynthetic process2.44E-04
31GO:0010114: response to red light3.51E-04
32GO:1905200: gibberellic acid transmembrane transport3.60E-04
33GO:0046467: membrane lipid biosynthetic process3.60E-04
34GO:0080112: seed growth3.60E-04
35GO:0005980: glycogen catabolic process3.60E-04
36GO:0015671: oxygen transport3.60E-04
37GO:0043953: protein transport by the Tat complex3.60E-04
38GO:0019544: arginine catabolic process to glutamate3.60E-04
39GO:0071277: cellular response to calcium ion3.60E-04
40GO:0065002: intracellular protein transmembrane transport3.60E-04
41GO:0080093: regulation of photorespiration3.60E-04
42GO:0031998: regulation of fatty acid beta-oxidation3.60E-04
43GO:0034337: RNA folding3.60E-04
44GO:0000476: maturation of 4.5S rRNA3.60E-04
45GO:0009443: pyridoxal 5'-phosphate salvage3.60E-04
46GO:0000967: rRNA 5'-end processing3.60E-04
47GO:1905039: carboxylic acid transmembrane transport3.60E-04
48GO:0050821: protein stabilization3.97E-04
49GO:0019252: starch biosynthetic process5.03E-04
50GO:0090333: regulation of stomatal closure5.82E-04
51GO:0005982: starch metabolic process6.87E-04
52GO:0016124: xanthophyll catabolic process7.83E-04
53GO:0080029: cellular response to boron-containing substance levels7.83E-04
54GO:0060151: peroxisome localization7.83E-04
55GO:0006898: receptor-mediated endocytosis7.83E-04
56GO:0034755: iron ion transmembrane transport7.83E-04
57GO:0071457: cellular response to ozone7.83E-04
58GO:1904143: positive regulation of carotenoid biosynthetic process7.83E-04
59GO:0016121: carotene catabolic process7.83E-04
60GO:0034470: ncRNA processing7.83E-04
61GO:0051645: Golgi localization7.83E-04
62GO:0010027: thylakoid membrane organization8.76E-04
63GO:0009658: chloroplast organization9.68E-04
64GO:0030048: actin filament-based movement1.19E-03
65GO:0018298: protein-chromophore linkage1.22E-03
66GO:0090436: leaf pavement cell development1.27E-03
67GO:0051646: mitochondrion localization1.27E-03
68GO:0005977: glycogen metabolic process1.27E-03
69GO:0010143: cutin biosynthetic process1.34E-03
70GO:0010218: response to far red light1.38E-03
71GO:0009637: response to blue light1.65E-03
72GO:0009853: photorespiration1.65E-03
73GO:0034599: cellular response to oxidative stress1.74E-03
74GO:0015696: ammonium transport1.83E-03
75GO:0046713: borate transport1.83E-03
76GO:1902358: sulfate transmembrane transport1.83E-03
77GO:0006020: inositol metabolic process1.83E-03
78GO:0071484: cellular response to light intensity1.83E-03
79GO:0009152: purine ribonucleotide biosynthetic process1.83E-03
80GO:0046653: tetrahydrofolate metabolic process1.83E-03
81GO:0009052: pentose-phosphate shunt, non-oxidative branch1.83E-03
82GO:0006021: inositol biosynthetic process2.45E-03
83GO:0071483: cellular response to blue light2.45E-03
84GO:0010021: amylopectin biosynthetic process2.45E-03
85GO:0071486: cellular response to high light intensity2.45E-03
86GO:0009765: photosynthesis, light harvesting2.45E-03
87GO:0010107: potassium ion import2.45E-03
88GO:0045727: positive regulation of translation2.45E-03
89GO:0015994: chlorophyll metabolic process2.45E-03
90GO:0072488: ammonium transmembrane transport2.45E-03
91GO:0019748: secondary metabolic process2.46E-03
92GO:0071493: cellular response to UV-B3.14E-03
93GO:0098719: sodium ion import across plasma membrane3.14E-03
94GO:0016120: carotene biosynthetic process3.14E-03
95GO:0006564: L-serine biosynthetic process3.14E-03
96GO:0009904: chloroplast accumulation movement3.14E-03
97GO:0010236: plastoquinone biosynthetic process3.14E-03
98GO:0000278: mitotic cell cycle3.14E-03
99GO:0006097: glyoxylate cycle3.14E-03
100GO:0006465: signal peptide processing3.14E-03
101GO:0042631: cellular response to water deprivation3.42E-03
102GO:0009643: photosynthetic acclimation3.88E-03
103GO:0046855: inositol phosphate dephosphorylation3.88E-03
104GO:0010304: PSII associated light-harvesting complex II catabolic process3.88E-03
105GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway3.88E-03
106GO:1902456: regulation of stomatal opening3.88E-03
107GO:0009791: post-embryonic development4.25E-03
108GO:0009903: chloroplast avoidance movement4.67E-03
109GO:0009854: oxidative photosynthetic carbon pathway4.67E-03
110GO:0071333: cellular response to glucose stimulus4.67E-03
111GO:0009955: adaxial/abaxial pattern specification4.67E-03
112GO:0045737: positive regulation of cyclin-dependent protein serine/threonine kinase activity4.67E-03
113GO:0010196: nonphotochemical quenching5.52E-03
114GO:0009645: response to low light intensity stimulus5.52E-03
115GO:0008272: sulfate transport5.52E-03
116GO:0009769: photosynthesis, light harvesting in photosystem II5.52E-03
117GO:1900056: negative regulation of leaf senescence5.52E-03
118GO:0008610: lipid biosynthetic process6.41E-03
119GO:0009642: response to light intensity6.41E-03
120GO:0009704: de-etiolation6.41E-03
121GO:0070413: trehalose metabolism in response to stress6.41E-03
122GO:0055075: potassium ion homeostasis6.41E-03
123GO:0052543: callose deposition in cell wall6.41E-03
124GO:0005975: carbohydrate metabolic process7.19E-03
125GO:0009657: plastid organization7.36E-03
126GO:2000031: regulation of salicylic acid mediated signaling pathway7.36E-03
127GO:0071482: cellular response to light stimulus7.36E-03
128GO:0015996: chlorophyll catabolic process7.36E-03
129GO:0019430: removal of superoxide radicals7.36E-03
130GO:0006098: pentose-phosphate shunt8.35E-03
131GO:0019432: triglyceride biosynthetic process8.35E-03
132GO:0006783: heme biosynthetic process8.35E-03
133GO:0009821: alkaloid biosynthetic process8.35E-03
134GO:0007346: regulation of mitotic cell cycle9.38E-03
135GO:0010380: regulation of chlorophyll biosynthetic process9.38E-03
136GO:0051453: regulation of intracellular pH9.38E-03
137GO:0006779: porphyrin-containing compound biosynthetic process9.38E-03
138GO:0006782: protoporphyrinogen IX biosynthetic process1.05E-02
139GO:0009641: shade avoidance1.05E-02
140GO:0072593: reactive oxygen species metabolic process1.16E-02
141GO:0043085: positive regulation of catalytic activity1.16E-02
142GO:0006879: cellular iron ion homeostasis1.16E-02
143GO:0015770: sucrose transport1.16E-02
144GO:0000272: polysaccharide catabolic process1.16E-02
145GO:0006415: translational termination1.16E-02
146GO:0018119: peptidyl-cysteine S-nitrosylation1.16E-02
147GO:0002213: defense response to insect1.28E-02
148GO:0016024: CDP-diacylglycerol biosynthetic process1.28E-02
149GO:0006790: sulfur compound metabolic process1.28E-02
150GO:0006631: fatty acid metabolic process1.30E-02
151GO:0006108: malate metabolic process1.40E-02
152GO:0006094: gluconeogenesis1.40E-02
153GO:0009767: photosynthetic electron transport chain1.40E-02
154GO:0007015: actin filament organization1.52E-02
155GO:0010223: secondary shoot formation1.52E-02
156GO:0009266: response to temperature stimulus1.52E-02
157GO:0048467: gynoecium development1.52E-02
158GO:0009409: response to cold1.59E-02
159GO:0009901: anther dehiscence1.65E-02
160GO:0046854: phosphatidylinositol phosphorylation1.65E-02
161GO:0010025: wax biosynthetic process1.78E-02
162GO:0042023: DNA endoreduplication1.78E-02
163GO:0006364: rRNA processing1.91E-02
164GO:0005992: trehalose biosynthetic process1.92E-02
165GO:0009695: jasmonic acid biosynthetic process2.06E-02
166GO:0016114: terpenoid biosynthetic process2.20E-02
167GO:0003333: amino acid transmembrane transport2.20E-02
168GO:0016998: cell wall macromolecule catabolic process2.20E-02
169GO:0019915: lipid storage2.20E-02
170GO:0009269: response to desiccation2.20E-02
171GO:0009735: response to cytokinin2.22E-02
172GO:2000022: regulation of jasmonic acid mediated signaling pathway2.35E-02
173GO:0030433: ubiquitin-dependent ERAD pathway2.35E-02
174GO:0016226: iron-sulfur cluster assembly2.35E-02
175GO:0080167: response to karrikin2.39E-02
176GO:0071215: cellular response to abscisic acid stimulus2.50E-02
177GO:0042742: defense response to bacterium2.58E-02
178GO:0009624: response to nematode2.72E-02
179GO:0016117: carotenoid biosynthetic process2.81E-02
180GO:0042335: cuticle development2.97E-02
181GO:0000413: protein peptidyl-prolyl isomerization2.97E-02
182GO:0045893: positive regulation of transcription, DNA-templated3.11E-02
183GO:0071472: cellular response to salt stress3.13E-02
184GO:0010154: fruit development3.13E-02
185GO:0006662: glycerol ether metabolic process3.13E-02
186GO:0006885: regulation of pH3.13E-02
187GO:0006520: cellular amino acid metabolic process3.13E-02
188GO:0015986: ATP synthesis coupled proton transport3.30E-02
189GO:0006814: sodium ion transport3.30E-02
190GO:0006869: lipid transport3.36E-02
191GO:0009058: biosynthetic process3.58E-02
192GO:0032502: developmental process3.81E-02
193GO:0009630: gravitropism3.81E-02
194GO:0010090: trichome morphogenesis3.99E-02
195GO:1901657: glycosyl compound metabolic process3.99E-02
196GO:0009567: double fertilization forming a zygote and endosperm4.17E-02
197GO:0006633: fatty acid biosynthetic process4.26E-02
198GO:0051607: defense response to virus4.54E-02
199GO:0010150: leaf senescence4.68E-02
RankGO TermAdjusted P value
1GO:0045550: geranylgeranyl reductase activity0.00E+00
2GO:0102550: 2-methyl-6-geranylgeranyl-1,4-benzoquinol methyltransferase activity0.00E+00
3GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity0.00E+00
4GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives0.00E+00
5GO:0016730: oxidoreductase activity, acting on iron-sulfur proteins as donors0.00E+00
6GO:0008465: glycerate dehydrogenase activity0.00E+00
7GO:0046408: chlorophyll synthetase activity0.00E+00
8GO:0008942: nitrite reductase [NAD(P)H] activity0.00E+00
9GO:0004768: stearoyl-CoA 9-desaturase activity0.00E+00
10GO:0035798: 2-alkenal reductase (NADP+) activity0.00E+00
11GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity0.00E+00
12GO:0046863: ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity0.00E+00
13GO:0036361: racemase activity, acting on amino acids and derivatives0.00E+00
14GO:0050236: pyridoxine:NADP 4-dehydrogenase activity0.00E+00
15GO:0009011: starch synthase activity6.93E-07
16GO:0016655: oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor8.00E-05
17GO:0031409: pigment binding1.39E-04
18GO:0004645: phosphorylase activity3.60E-04
19GO:0034256: chlorophyll(ide) b reductase activity3.60E-04
20GO:0033946: xyloglucan-specific endo-beta-1,4-glucanase activity3.60E-04
21GO:0015168: glycerol transmembrane transporter activity3.60E-04
22GO:0045486: naringenin 3-dioxygenase activity3.60E-04
23GO:0051741: 2-methyl-6-phytyl-1,4-benzoquinone methyltransferase activity3.60E-04
24GO:0005344: oxygen transporter activity3.60E-04
25GO:0035671: enone reductase activity3.60E-04
26GO:0008886: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity3.60E-04
27GO:1905201: gibberellin transmembrane transporter activity3.60E-04
28GO:0008184: glycogen phosphorylase activity3.60E-04
29GO:0016491: oxidoreductase activity5.94E-04
30GO:0061575: cyclin-dependent protein serine/threonine kinase activator activity7.83E-04
31GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity7.83E-04
32GO:0019172: glyoxalase III activity7.83E-04
33GO:0019156: isoamylase activity7.83E-04
34GO:0008934: inositol monophosphate 1-phosphatase activity7.83E-04
35GO:0052833: inositol monophosphate 4-phosphatase activity7.83E-04
36GO:0008883: glutamyl-tRNA reductase activity7.83E-04
37GO:0047746: chlorophyllase activity7.83E-04
38GO:0042389: omega-3 fatty acid desaturase activity7.83E-04
39GO:0010297: heteropolysaccharide binding7.83E-04
40GO:0009977: proton motive force dependent protein transmembrane transporter activity7.83E-04
41GO:0004617: phosphoglycerate dehydrogenase activity7.83E-04
42GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity7.83E-04
43GO:0052832: inositol monophosphate 3-phosphatase activity7.83E-04
44GO:0033201: alpha-1,4-glucan synthase activity7.83E-04
45GO:0015386: potassium:proton antiporter activity9.22E-04
46GO:0016168: chlorophyll binding9.39E-04
47GO:0004565: beta-galactosidase activity1.19E-03
48GO:0004373: glycogen (starch) synthase activity1.27E-03
49GO:0050734: hydroxycinnamoyltransferase activity1.27E-03
50GO:0004751: ribose-5-phosphate isomerase activity1.27E-03
51GO:0016742: hydroxymethyl-, formyl- and related transferase activity1.27E-03
52GO:0070402: NADPH binding1.27E-03
53GO:0008864: formyltetrahydrofolate deformylase activity1.27E-03
54GO:0003774: motor activity1.34E-03
55GO:0016149: translation release factor activity, codon specific1.83E-03
56GO:0022890: inorganic cation transmembrane transporter activity1.83E-03
57GO:0016628: oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor1.83E-03
58GO:0016851: magnesium chelatase activity1.83E-03
59GO:0046715: borate transmembrane transporter activity1.83E-03
60GO:0015204: urea transmembrane transporter activity2.45E-03
61GO:0008453: alanine-glyoxylate transaminase activity2.45E-03
62GO:0045300: acyl-[acyl-carrier-protein] desaturase activity3.14E-03
63GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity3.14E-03
64GO:0042802: identical protein binding3.17E-03
65GO:0004556: alpha-amylase activity3.88E-03
66GO:0004462: lactoylglutathione lyase activity3.88E-03
67GO:0004366: glycerol-3-phosphate O-acyltransferase activity3.88E-03
68GO:0004784: superoxide dismutase activity3.88E-03
69GO:0015081: sodium ion transmembrane transporter activity3.88E-03
70GO:0016615: malate dehydrogenase activity3.88E-03
71GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity3.88E-03
72GO:0008519: ammonium transmembrane transporter activity3.88E-03
73GO:2001070: starch binding3.88E-03
74GO:0004332: fructose-bisphosphate aldolase activity3.88E-03
75GO:0048038: quinone binding4.55E-03
76GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity4.67E-03
77GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity4.67E-03
78GO:0030060: L-malate dehydrogenase activity4.67E-03
79GO:0016791: phosphatase activity5.52E-03
80GO:0004033: aldo-keto reductase (NADP) activity6.41E-03
81GO:0019843: rRNA binding6.95E-03
82GO:0016717: oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water7.36E-03
83GO:0008135: translation factor activity, RNA binding7.36E-03
84GO:0015078: hydrogen ion transmembrane transporter activity7.36E-03
85GO:0008271: secondary active sulfate transmembrane transporter activity7.36E-03
86GO:0003747: translation release factor activity8.35E-03
87GO:0005381: iron ion transmembrane transporter activity9.38E-03
88GO:0015174: basic amino acid transmembrane transporter activity9.38E-03
89GO:0016844: strictosidine synthase activity9.38E-03
90GO:0004028: 3-chloroallyl aldehyde dehydrogenase activity9.38E-03
91GO:0030234: enzyme regulator activity1.05E-02
92GO:0008047: enzyme activator activity1.05E-02
93GO:0003746: translation elongation factor activity1.09E-02
94GO:0047372: acylglycerol lipase activity1.16E-02
95GO:0008515: sucrose transmembrane transporter activity1.16E-02
96GO:0015116: sulfate transmembrane transporter activity1.28E-02
97GO:0004022: alcohol dehydrogenase (NAD) activity1.40E-02
98GO:0031072: heat shock protein binding1.40E-02
99GO:0003725: double-stranded RNA binding1.40E-02
100GO:0004185: serine-type carboxypeptidase activity1.41E-02
101GO:0042973: glucan endo-1,3-beta-D-glucosidase activity1.52E-02
102GO:0008266: poly(U) RNA binding1.52E-02
103GO:0051537: 2 iron, 2 sulfur cluster binding1.53E-02
104GO:0051119: sugar transmembrane transporter activity1.65E-02
105GO:0051287: NAD binding1.71E-02
106GO:0051536: iron-sulfur cluster binding1.92E-02
107GO:0031418: L-ascorbic acid binding1.92E-02
108GO:0043130: ubiquitin binding1.92E-02
109GO:0015079: potassium ion transmembrane transporter activity2.06E-02
110GO:0016747: transferase activity, transferring acyl groups other than amino-acyl groups2.33E-02
111GO:0003727: single-stranded RNA binding2.65E-02
112GO:0047134: protein-disulfide reductase activity2.81E-02
113GO:0015299: solute:proton antiporter activity3.30E-02
114GO:0050662: coenzyme binding3.30E-02
115GO:0004791: thioredoxin-disulfide reductase activity3.30E-02
116GO:0016853: isomerase activity3.30E-02
117GO:0019901: protein kinase binding3.47E-02
118GO:0016762: xyloglucan:xyloglucosyl transferase activity3.64E-02
119GO:0030170: pyridoxal phosphate binding3.77E-02
120GO:0015385: sodium:proton antiporter activity3.99E-02
121GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor3.99E-02
122GO:0016597: amino acid binding4.54E-02
123GO:0015250: water channel activity4.72E-02
RankGO TermAdjusted P value
1GO:0042579: microbody0.00E+00
2GO:0043235: receptor complex0.00E+00
3GO:0009507: chloroplast1.04E-38
4GO:0009535: chloroplast thylakoid membrane5.82E-25
5GO:0009534: chloroplast thylakoid2.08E-21
6GO:0009941: chloroplast envelope2.74E-15
7GO:0009579: thylakoid9.48E-12
8GO:0009570: chloroplast stroma2.85E-10
9GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)4.30E-09
10GO:0031969: chloroplast membrane4.98E-08
11GO:0010287: plastoglobule1.29E-07
12GO:0009543: chloroplast thylakoid lumen1.61E-07
13GO:0009654: photosystem II oxygen evolving complex8.79E-06
14GO:0031977: thylakoid lumen3.08E-05
15GO:0009522: photosystem I3.56E-05
16GO:0019898: extrinsic component of membrane4.10E-05
17GO:0010319: stromule7.64E-05
18GO:0030076: light-harvesting complex1.18E-04
19GO:0009515: granal stacked thylakoid3.60E-04
20GO:0005787: signal peptidase complex3.60E-04
21GO:0009344: nitrite reductase complex [NAD(P)H]3.60E-04
22GO:0031361: integral component of thylakoid membrane3.60E-04
23GO:0048046: apoplast4.88E-04
24GO:0009523: photosystem II5.03E-04
25GO:0043036: starch grain7.83E-04
26GO:0000427: plastid-encoded plastid RNA polymerase complex7.83E-04
27GO:0016459: myosin complex8.01E-04
28GO:0010007: magnesium chelatase complex1.27E-03
29GO:0033281: TAT protein transport complex1.27E-03
30GO:0009517: PSII associated light-harvesting complex II2.45E-03
31GO:0005773: vacuole3.85E-03
32GO:0045263: proton-transporting ATP synthase complex, coupling factor F(o)3.88E-03
33GO:0031982: vesicle6.41E-03
34GO:0009501: amyloplast6.41E-03
35GO:0000307: cyclin-dependent protein kinase holoenzyme complex7.36E-03
36GO:0005763: mitochondrial small ribosomal subunit8.35E-03
37GO:0032040: small-subunit processome1.28E-02
38GO:0030095: chloroplast photosystem II1.52E-02
39GO:0005887: integral component of plasma membrane1.70E-02
40GO:0043234: protein complex1.78E-02
41GO:0042651: thylakoid membrane2.06E-02
42GO:0005777: peroxisome3.11E-02
43GO:0005623: cell3.49E-02
44GO:0016021: integral component of membrane3.93E-02
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Gene type



Gene DE type