co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G21050

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:2000469: negative regulation of peroxidase activity	0.00E+00
3	GO:0010059: positive regulation of atrichoblast fate specification	0.00E+00
4	GO:0017038: protein import	0.00E+00
5	GO:0090697: post-embryonic plant organ morphogenesis	0.00E+00
6	GO:0042352: GDP-L-fucose salvage	0.00E+00
7	GO:0009733: response to auxin	1.96E-09
8	GO:0046620: regulation of organ growth	3.41E-09
9	GO:0009734: auxin-activated signaling pathway	1.19E-07
10	GO:0040008: regulation of growth	2.13E-05
11	GO:0015995: chlorophyll biosynthetic process	2.20E-05
12	GO:2000012: regulation of auxin polar transport	1.43E-04
13	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.69E-04
14	GO:0010020: chloroplast fission	1.71E-04
15	GO:0048497: maintenance of floral organ identity	1.89E-04
16	GO:0048437: floral organ development	4.62E-04
17	GO:0030307: positive regulation of cell growth	4.62E-04
18	GO:0006434: seryl-tRNA aminoacylation	4.64E-04
19	GO:0000025: maltose catabolic process	4.64E-04
20	GO:0070509: calcium ion import	4.64E-04
21	GO:0005980: glycogen catabolic process	4.64E-04
22	GO:0030198: extracellular matrix organization	4.64E-04
23	GO:0006438: valyl-tRNA aminoacylation	4.64E-04
24	GO:0097056: selenocysteinyl-tRNA(Sec) biosynthetic process	4.64E-04
25	GO:0046520: sphingoid biosynthetic process	4.64E-04
26	GO:0010063: positive regulation of trichoblast fate specification	4.64E-04
27	GO:0010480: microsporocyte differentiation	4.64E-04
28	GO:1902458: positive regulation of stomatal opening	4.64E-04
29	GO:0015904: tetracycline transport	4.64E-04
30	GO:0000305: response to oxygen radical	4.64E-04
31	GO:0000023: maltose metabolic process	4.64E-04
32	GO:0009926: auxin polar transport	6.35E-04
33	GO:0007275: multicellular organism development	6.54E-04
34	GO:0010305: leaf vascular tissue pattern formation	6.77E-04
35	GO:0009638: phototropism	9.90E-04
36	GO:0006779: porphyrin-containing compound biosynthetic process	9.90E-04
37	GO:0009629: response to gravity	1.00E-03
38	GO:0007154: cell communication	1.00E-03
39	GO:0018026: peptidyl-lysine monomethylation	1.00E-03
40	GO:0006423: cysteinyl-tRNA aminoacylation	1.00E-03
41	GO:0071497: cellular response to freezing	1.00E-03
42	GO:0080009: mRNA methylation	1.00E-03
43	GO:0009786: regulation of asymmetric cell division	1.00E-03
44	GO:1903426: regulation of reactive oxygen species biosynthetic process	1.00E-03
45	GO:0006568: tryptophan metabolic process	1.00E-03
46	GO:2000123: positive regulation of stomatal complex development	1.00E-03
47	GO:0043039: tRNA aminoacylation	1.00E-03
48	GO:0006782: protoporphyrinogen IX biosynthetic process	1.15E-03
49	GO:0010027: thylakoid membrane organization	1.40E-03
50	GO:0005983: starch catabolic process	1.52E-03
51	GO:0033591: response to L-ascorbic acid	1.63E-03
52	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.63E-03
53	GO:0071398: cellular response to fatty acid	1.63E-03
54	GO:0030261: chromosome condensation	1.63E-03
55	GO:0010102: lateral root morphogenesis	1.73E-03
56	GO:0009658: chloroplast organization	1.89E-03
57	GO:0019048: modulation by virus of host morphology or physiology	2.37E-03
58	GO:0009647: skotomorphogenesis	2.37E-03
59	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.37E-03
60	GO:0046739: transport of virus in multicellular host	2.37E-03
61	GO:0031048: chromatin silencing by small RNA	2.37E-03
62	GO:0043572: plastid fission	2.37E-03
63	GO:0010371: regulation of gibberellin biosynthetic process	2.37E-03
64	GO:0010071: root meristem specification	2.37E-03
65	GO:0009102: biotin biosynthetic process	2.37E-03
66	GO:0006418: tRNA aminoacylation for protein translation	2.99E-03
67	GO:0009765: photosynthesis, light harvesting	3.18E-03
68	GO:0022622: root system development	3.18E-03
69	GO:0006221: pyrimidine nucleotide biosynthetic process	3.18E-03
70	GO:2000038: regulation of stomatal complex development	3.18E-03
71	GO:0051567: histone H3-K9 methylation	3.18E-03
72	GO:0006749: glutathione metabolic process	3.18E-03
73	GO:1901141: regulation of lignin biosynthetic process	3.18E-03
74	GO:0010109: regulation of photosynthesis	3.18E-03
75	GO:0009640: photomorphogenesis	3.70E-03
76	GO:0009693: ethylene biosynthetic process	3.92E-03
77	GO:0010375: stomatal complex patterning	4.08E-03
78	GO:0016120: carotene biosynthetic process	4.08E-03
79	GO:0045038: protein import into chloroplast thylakoid membrane	4.08E-03
80	GO:0016123: xanthophyll biosynthetic process	4.08E-03
81	GO:0009416: response to light stimulus	4.73E-03
82	GO:0007166: cell surface receptor signaling pathway	4.84E-03
83	GO:0009913: epidermal cell differentiation	5.05E-03
84	GO:0016554: cytidine to uridine editing	5.05E-03
85	GO:1902456: regulation of stomatal opening	5.05E-03
86	GO:0042793: transcription from plastid promoter	5.05E-03
87	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.05E-03
88	GO:0016458: gene silencing	5.05E-03
89	GO:0010405: arabinogalactan protein metabolic process	5.05E-03
90	GO:0009959: negative gravitropism	5.05E-03
91	GO:0010182: sugar mediated signaling pathway	5.39E-03
92	GO:0009646: response to absence of light	5.80E-03
93	GO:0042372: phylloquinone biosynthetic process	6.09E-03
94	GO:0042026: protein refolding	6.09E-03
95	GO:0006458: 'de novo' protein folding	6.09E-03
96	GO:2000033: regulation of seed dormancy process	6.09E-03
97	GO:0030488: tRNA methylation	6.09E-03
98	GO:0080086: stamen filament development	6.09E-03
99	GO:0009793: embryo development ending in seed dormancy	6.84E-03
100	GO:0010583: response to cyclopentenone	7.13E-03
101	GO:0030497: fatty acid elongation	7.20E-03
102	GO:0010098: suspensor development	7.20E-03
103	GO:0000122: negative regulation of transcription from RNA polymerase II promoter	7.20E-03
104	GO:0010444: guard mother cell differentiation	7.20E-03
105	GO:0032880: regulation of protein localization	7.20E-03
106	GO:0010161: red light signaling pathway	7.20E-03
107	GO:0048528: post-embryonic root development	7.20E-03
108	GO:1901657: glycosyl compound metabolic process	7.60E-03
109	GO:0006468: protein phosphorylation	7.83E-03
110	GO:0006605: protein targeting	8.39E-03
111	GO:2000070: regulation of response to water deprivation	8.39E-03
112	GO:0000105: histidine biosynthetic process	8.39E-03
113	GO:0051607: defense response to virus	9.13E-03
114	GO:0009742: brassinosteroid mediated signaling pathway	9.16E-03
115	GO:0015996: chlorophyll catabolic process	9.63E-03
116	GO:0007186: G-protein coupled receptor signaling pathway	9.63E-03
117	GO:0010497: plasmodesmata-mediated intercellular transport	9.63E-03
118	GO:0010100: negative regulation of photomorphogenesis	9.63E-03
119	GO:0006526: arginine biosynthetic process	9.63E-03
120	GO:0010099: regulation of photomorphogenesis	9.63E-03
121	GO:0006351: transcription, DNA-templated	9.69E-03
122	GO:0048366: leaf development	9.85E-03
123	GO:0048507: meristem development	1.09E-02
124	GO:0006783: heme biosynthetic process	1.09E-02
125	GO:0000373: Group II intron splicing	1.09E-02
126	GO:0000902: cell morphogenesis	1.09E-02
127	GO:0009835: fruit ripening	1.09E-02
128	GO:0009098: leucine biosynthetic process	1.23E-02
129	GO:1900865: chloroplast RNA modification	1.23E-02
130	GO:0031425: chloroplast RNA processing	1.23E-02
131	GO:0048481: plant ovule development	1.27E-02
132	GO:0010162: seed dormancy process	1.37E-02
133	GO:0009299: mRNA transcription	1.37E-02
134	GO:0030422: production of siRNA involved in RNA interference	1.37E-02
135	GO:0048829: root cap development	1.37E-02
136	GO:0009641: shade avoidance	1.37E-02
137	GO:0006949: syncytium formation	1.37E-02
138	GO:0045892: negative regulation of transcription, DNA-templated	1.43E-02
139	GO:0048527: lateral root development	1.47E-02
140	GO:0009773: photosynthetic electron transport in photosystem I	1.52E-02
141	GO:0009073: aromatic amino acid family biosynthetic process	1.52E-02
142	GO:0048229: gametophyte development	1.52E-02
143	GO:0012501: programmed cell death	1.68E-02
144	GO:0045037: protein import into chloroplast stroma	1.68E-02
145	GO:0009451: RNA modification	1.76E-02
146	GO:0010588: cotyledon vascular tissue pattern formation	1.84E-02
147	GO:0030001: metal ion transport	1.84E-02
148	GO:0009785: blue light signaling pathway	1.84E-02
149	GO:0010628: positive regulation of gene expression	1.84E-02
150	GO:0016042: lipid catabolic process	1.84E-02
151	GO:0006006: glucose metabolic process	1.84E-02
152	GO:0009691: cytokinin biosynthetic process	1.84E-02
153	GO:0050826: response to freezing	1.84E-02
154	GO:0010075: regulation of meristem growth	1.84E-02
155	GO:0009725: response to hormone	1.84E-02
156	GO:0010207: photosystem II assembly	2.00E-02
157	GO:0009266: response to temperature stimulus	2.00E-02
158	GO:0009934: regulation of meristem structural organization	2.00E-02
159	GO:0090351: seedling development	2.17E-02
160	GO:0010030: positive regulation of seed germination	2.17E-02
161	GO:0070588: calcium ion transmembrane transport	2.17E-02
162	GO:0000162: tryptophan biosynthetic process	2.35E-02
163	GO:0006071: glycerol metabolic process	2.35E-02
164	GO:0006833: water transport	2.35E-02
165	GO:0010187: negative regulation of seed germination	2.53E-02
166	GO:0019953: sexual reproduction	2.71E-02
167	GO:0006825: copper ion transport	2.71E-02
168	GO:0061077: chaperone-mediated protein folding	2.90E-02
169	GO:0006306: DNA methylation	2.90E-02
170	GO:0048511: rhythmic process	2.90E-02
171	GO:0010431: seed maturation	2.90E-02
172	GO:0007005: mitochondrion organization	3.09E-02
173	GO:0010082: regulation of root meristem growth	3.29E-02
174	GO:0009686: gibberellin biosynthetic process	3.29E-02
175	GO:0048367: shoot system development	3.42E-02
176	GO:0010091: trichome branching	3.49E-02
177	GO:0042127: regulation of cell proliferation	3.49E-02
178	GO:0006355: regulation of transcription, DNA-templated	3.68E-02
179	GO:0016117: carotenoid biosynthetic process	3.70E-02
180	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	3.70E-02
181	GO:0008284: positive regulation of cell proliferation	3.70E-02
182	GO:0009740: gibberellic acid mediated signaling pathway	3.76E-02
183	GO:0048653: anther development	3.91E-02
184	GO:0042631: cellular response to water deprivation	3.91E-02
185	GO:0080022: primary root development	3.91E-02
186	GO:0008033: tRNA processing	3.91E-02
187	GO:0034220: ion transmembrane transport	3.91E-02
188	GO:0010087: phloem or xylem histogenesis	3.91E-02
189	GO:0010118: stomatal movement	3.91E-02
190	GO:0005975: carbohydrate metabolic process	4.04E-02
191	GO:0009958: positive gravitropism	4.12E-02
192	GO:0006520: cellular amino acid metabolic process	4.12E-02
193	GO:0006342: chromatin silencing	4.12E-02
194	GO:0007018: microtubule-based movement	4.34E-02
195	GO:0042752: regulation of circadian rhythm	4.34E-02
196	GO:0015979: photosynthesis	4.54E-02
197	GO:0048825: cotyledon development	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0005363: maltose transmembrane transporter activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0050201: fucokinase activity	0.00E+00
4	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
5	GO:0008756: o-succinylbenzoate-CoA ligase activity	0.00E+00
6	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
7	GO:0008922: long-chain fatty acid [acyl-carrier-protein] ligase activity	0.00E+00
8	GO:0005201: extracellular matrix structural constituent	0.00E+00
9	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
10	GO:0004076: biotin synthase activity	0.00E+00
11	GO:0001872: (1->3)-beta-D-glucan binding	7.03E-05
12	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	4.64E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	4.64E-04
14	GO:0008184: glycogen phosphorylase activity	4.64E-04
15	GO:0004828: serine-tRNA ligase activity	4.64E-04
16	GO:0004134: 4-alpha-glucanotransferase activity	4.64E-04
17	GO:0016422: mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity	4.64E-04
18	GO:0004645: phosphorylase activity	4.64E-04
19	GO:0009374: biotin binding	4.64E-04
20	GO:0052381: tRNA dimethylallyltransferase activity	4.64E-04
21	GO:0010313: phytochrome binding	4.64E-04
22	GO:0004832: valine-tRNA ligase activity	4.64E-04
23	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	4.64E-04
24	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	4.64E-04
25	GO:0000170: sphingosine hydroxylase activity	4.64E-04
26	GO:0050139: nicotinate-N-glucosyltransferase activity	4.64E-04
27	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	4.64E-04
28	GO:0001085: RNA polymerase II transcription factor binding	6.77E-04
29	GO:0004817: cysteine-tRNA ligase activity	1.00E-03
30	GO:0016630: protochlorophyllide reductase activity	1.00E-03
31	GO:0042284: sphingolipid delta-4 desaturase activity	1.00E-03
32	GO:0008493: tetracycline transporter activity	1.00E-03
33	GO:0000179: rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.00E-03
34	GO:0004362: glutathione-disulfide reductase activity	1.00E-03
35	GO:0003852: 2-isopropylmalate synthase activity	1.00E-03
36	GO:0043425: bHLH transcription factor binding	1.00E-03
37	GO:0004180: carboxypeptidase activity	1.63E-03
38	GO:0016805: dipeptidase activity	1.63E-03
39	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.63E-03
40	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.63E-03
41	GO:0005524: ATP binding	1.91E-03
42	GO:0009041: uridylate kinase activity	2.37E-03
43	GO:0035197: siRNA binding	2.37E-03
44	GO:0016851: magnesium chelatase activity	2.37E-03
45	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	2.38E-03
46	GO:0005528: FK506 binding	2.70E-03
47	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.18E-03
48	GO:0019199: transmembrane receptor protein kinase activity	3.18E-03
49	GO:0004335: galactokinase activity	3.18E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	3.18E-03
51	GO:0004176: ATP-dependent peptidase activity	3.28E-03
52	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	3.54E-03
53	GO:0003989: acetyl-CoA carboxylase activity	4.08E-03
54	GO:0004674: protein serine/threonine kinase activity	4.22E-03
55	GO:0003727: single-stranded RNA binding	4.27E-03
56	GO:0004812: aminoacyl-tRNA ligase activity	4.62E-03
57	GO:0016208: AMP binding	5.05E-03
58	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.05E-03
59	GO:0016832: aldehyde-lyase activity	6.09E-03
60	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	6.09E-03
61	GO:0003723: RNA binding	8.07E-03
62	GO:0003682: chromatin binding	8.37E-03
63	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	8.39E-03
64	GO:0008237: metallopeptidase activity	8.60E-03
65	GO:0008173: RNA methyltransferase activity	9.63E-03
66	GO:0008889: glycerophosphodiester phosphodiesterase activity	1.09E-02
67	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.09E-02
68	GO:0102483: scopolin beta-glucosidase activity	1.14E-02
69	GO:0030247: polysaccharide binding	1.14E-02
70	GO:0052689: carboxylic ester hydrolase activity	1.24E-02
71	GO:0030170: pyridoxal phosphate binding	1.29E-02
72	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.34E-02
73	GO:0003700: transcription factor activity, sequence-specific DNA binding	1.44E-02
74	GO:0004871: signal transducer activity	1.50E-02
75	GO:0044183: protein binding involved in protein folding	1.52E-02
76	GO:0047372: acylglycerol lipase activity	1.52E-02
77	GO:0004521: endoribonuclease activity	1.68E-02
78	GO:0000976: transcription regulatory region sequence-specific DNA binding	1.68E-02
79	GO:0008422: beta-glucosidase activity	1.76E-02
80	GO:0003725: double-stranded RNA binding	1.84E-02
81	GO:0005262: calcium channel activity	1.84E-02
82	GO:0008083: growth factor activity	2.00E-02
83	GO:0003712: transcription cofactor activity	2.17E-02
84	GO:0008146: sulfotransferase activity	2.17E-02
85	GO:0004519: endonuclease activity	2.17E-02
86	GO:0004190: aspartic-type endopeptidase activity	2.17E-02
87	GO:0043621: protein self-association	2.25E-02
88	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.43E-02
89	GO:0031418: L-ascorbic acid binding	2.53E-02
90	GO:0005345: purine nucleobase transmembrane transporter activity	2.71E-02
91	GO:0005507: copper ion binding	2.72E-02
92	GO:0033612: receptor serine/threonine kinase binding	2.90E-02
93	GO:0008408: 3'-5' exonuclease activity	2.90E-02
94	GO:0016298: lipase activity	2.90E-02
95	GO:0016788: hydrolase activity, acting on ester bonds	3.03E-02
96	GO:0003777: microtubule motor activity	3.11E-02
97	GO:0008289: lipid binding	3.13E-02
98	GO:0046983: protein dimerization activity	3.20E-02
99	GO:0005515: protein binding	3.50E-02
100	GO:0004650: polygalacturonase activity	3.64E-02
101	GO:0008080: N-acetyltransferase activity	4.12E-02
102	GO:0004527: exonuclease activity	4.12E-02
103	GO:0005199: structural constituent of cell wall	4.12E-02
104	GO:0019901: protein kinase binding	4.56E-02

Rank	GO Term	Adjusted P value
1	GO:0009534: chloroplast thylakoid	4.25E-05
2	GO:0009507: chloroplast	5.48E-05
3	GO:0009941: chloroplast envelope	9.54E-05
4	GO:0009570: chloroplast stroma	1.62E-04
5	GO:0000796: condensin complex	4.64E-04
6	GO:0031357: integral component of chloroplast inner membrane	1.00E-03
7	GO:0000427: plastid-encoded plastid RNA polymerase complex	1.00E-03
8	GO:0005886: plasma membrane	1.44E-03
9	GO:0005667: transcription factor complex	1.62E-03
10	GO:0009528: plastid inner membrane	1.63E-03
11	GO:0019897: extrinsic component of plasma membrane	1.63E-03
12	GO:0010007: magnesium chelatase complex	1.63E-03
13	GO:0030139: endocytic vesicle	1.63E-03
14	GO:0009317: acetyl-CoA carboxylase complex	1.63E-03
15	GO:0009508: plastid chromosome	1.73E-03
16	GO:0032585: multivesicular body membrane	2.37E-03
17	GO:0005719: nuclear euchromatin	2.37E-03
18	GO:0009527: plastid outer membrane	3.18E-03
19	GO:0046658: anchored component of plasma membrane	6.06E-03
20	GO:0009986: cell surface	7.20E-03
21	GO:0009501: amyloplast	8.39E-03
22	GO:0009706: chloroplast inner membrane	8.50E-03
23	GO:0009295: nucleoid	8.60E-03
24	GO:0009543: chloroplast thylakoid lumen	1.13E-02
25	GO:0015030: Cajal body	1.23E-02
26	GO:0000418: DNA-directed RNA polymerase IV complex	1.37E-02
27	GO:0090404: pollen tube tip	1.52E-02
28	GO:0005884: actin filament	1.52E-02
29	GO:0030095: chloroplast photosystem II	2.00E-02
30	GO:0009654: photosystem II oxygen evolving complex	2.71E-02
31	GO:0009532: plastid stroma	2.90E-02
32	GO:0031225: anchored component of membrane	3.17E-02
33	GO:0015629: actin cytoskeleton	3.29E-02
34	GO:0005871: kinesin complex	3.70E-02
35	GO:0031969: chloroplast membrane	3.86E-02
36	GO:0019898: extrinsic component of membrane	4.56E-02