co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G20670

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0017038: protein import	0.00E+00
2	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
3	GO:0018023: peptidyl-lysine trimethylation	0.00E+00
4	GO:0009069: serine family amino acid metabolic process	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0002184: cytoplasmic translational termination	0.00E+00
7	GO:0043392: negative regulation of DNA binding	0.00E+00
8	GO:0032194: ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate	0.00E+00
9	GO:0070178: D-serine metabolic process	0.00E+00
10	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
11	GO:0006428: isoleucyl-tRNA aminoacylation	0.00E+00
12	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
13	GO:0042407: cristae formation	0.00E+00
14	GO:0009658: chloroplast organization	9.02E-07
15	GO:0005983: starch catabolic process	9.09E-07
16	GO:0015995: chlorophyll biosynthetic process	7.13E-05
17	GO:0042026: protein refolding	1.74E-04
18	GO:0046620: regulation of organ growth	2.87E-04
19	GO:0010480: microsporocyte differentiation	2.89E-04
20	GO:0042759: long-chain fatty acid biosynthetic process	2.89E-04
21	GO:0042371: vitamin K biosynthetic process	2.89E-04
22	GO:0043007: maintenance of rDNA	2.89E-04
23	GO:0015904: tetracycline transport	2.89E-04
24	GO:0005991: trehalose metabolic process	2.89E-04
25	GO:0000023: maltose metabolic process	2.89E-04
26	GO:0000025: maltose catabolic process	2.89E-04
27	GO:0005980: glycogen catabolic process	2.89E-04
28	GO:0030198: extracellular matrix organization	2.89E-04
29	GO:0032544: plastid translation	3.53E-04
30	GO:0006783: heme biosynthetic process	4.25E-04
31	GO:0019388: galactose catabolic process	6.34E-04
32	GO:0006423: cysteinyl-tRNA aminoacylation	6.34E-04
33	GO:0007154: cell communication	6.34E-04
34	GO:0018026: peptidyl-lysine monomethylation	6.34E-04
35	GO:0071497: cellular response to freezing	6.34E-04
36	GO:0006568: tryptophan metabolic process	6.34E-04
37	GO:0010275: NAD(P)H dehydrogenase complex assembly	6.34E-04
38	GO:0009629: response to gravity	6.34E-04
39	GO:0009773: photosynthetic electron transport in photosystem I	6.77E-04
40	GO:0006006: glucose metabolic process	8.76E-04
41	GO:2000012: regulation of auxin polar transport	8.76E-04
42	GO:0009409: response to cold	8.77E-04
43	GO:0015979: photosynthesis	1.01E-03
44	GO:0010731: protein glutathionylation	1.47E-03
45	GO:0046739: transport of virus in multicellular host	1.47E-03
46	GO:0009590: detection of gravity	1.47E-03
47	GO:0043572: plastid fission	1.47E-03
48	GO:0051085: chaperone mediated protein folding requiring cofactor	1.47E-03
49	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.47E-03
50	GO:0061077: chaperone-mediated protein folding	1.64E-03
51	GO:0006855: drug transmembrane transport	1.84E-03
52	GO:1901141: regulation of lignin biosynthetic process	1.97E-03
53	GO:0010109: regulation of photosynthesis	1.97E-03
54	GO:0019464: glycine decarboxylation via glycine cleavage system	1.97E-03
55	GO:0022622: root system development	1.97E-03
56	GO:0046907: intracellular transport	2.52E-03
57	GO:0010236: plastoquinone biosynthetic process	2.52E-03
58	GO:0016120: carotene biosynthetic process	2.52E-03
59	GO:0010197: polar nucleus fusion	2.67E-03
60	GO:0010182: sugar mediated signaling pathway	2.67E-03
61	GO:0019252: starch biosynthetic process	3.08E-03
62	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.11E-03
63	GO:0010190: cytochrome b6f complex assembly	3.11E-03
64	GO:0000741: karyogamy	3.11E-03
65	GO:0006563: L-serine metabolic process	3.11E-03
66	GO:0010405: arabinogalactan protein metabolic process	3.11E-03
67	GO:0006751: glutathione catabolic process	3.11E-03
68	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.11E-03
69	GO:0009959: negative gravitropism	3.11E-03
70	GO:0000470: maturation of LSU-rRNA	3.11E-03
71	GO:2000033: regulation of seed dormancy process	3.74E-03
72	GO:0006458: 'de novo' protein folding	3.74E-03
73	GO:0048509: regulation of meristem development	3.74E-03
74	GO:0030488: tRNA methylation	3.74E-03
75	GO:0080086: stamen filament development	3.74E-03
76	GO:0042372: phylloquinone biosynthetic process	3.74E-03
77	GO:0010444: guard mother cell differentiation	4.41E-03
78	GO:0032880: regulation of protein localization	4.41E-03
79	GO:0010161: red light signaling pathway	4.41E-03
80	GO:0009772: photosynthetic electron transport in photosystem II	4.41E-03
81	GO:0048437: floral organ development	4.41E-03
82	GO:0009607: response to biotic stimulus	5.03E-03
83	GO:0070413: trehalose metabolism in response to stress	5.12E-03
84	GO:0006605: protein targeting	5.12E-03
85	GO:0005978: glycogen biosynthetic process	5.12E-03
86	GO:0010100: negative regulation of photomorphogenesis	5.87E-03
87	GO:0006526: arginine biosynthetic process	5.87E-03
88	GO:0010099: regulation of photomorphogenesis	5.87E-03
89	GO:0010497: plasmodesmata-mediated intercellular transport	5.87E-03
90	GO:0006508: proteolysis	6.14E-03
91	GO:0006633: fatty acid biosynthetic process	6.14E-03
92	GO:0009817: defense response to fungus, incompatible interaction	6.21E-03
93	GO:0040008: regulation of growth	6.53E-03
94	GO:0009813: flavonoid biosynthetic process	6.53E-03
95	GO:0010206: photosystem II repair	6.65E-03
96	GO:0046916: cellular transition metal ion homeostasis	6.65E-03
97	GO:0009638: phototropism	7.48E-03
98	GO:0043067: regulation of programmed cell death	7.48E-03
99	GO:0009641: shade avoidance	8.33E-03
100	GO:0010162: seed dormancy process	8.33E-03
101	GO:0006782: protoporphyrinogen IX biosynthetic process	8.33E-03
102	GO:0009073: aromatic amino acid family biosynthetic process	9.22E-03
103	GO:0006415: translational termination	9.22E-03
104	GO:0048229: gametophyte development	9.22E-03
105	GO:0010015: root morphogenesis	9.22E-03
106	GO:0000038: very long-chain fatty acid metabolic process	9.22E-03
107	GO:0006631: fatty acid metabolic process	9.37E-03
108	GO:0016024: CDP-diacylglycerol biosynthetic process	1.01E-02
109	GO:0010628: positive regulation of gene expression	1.11E-02
110	GO:0050826: response to freezing	1.11E-02
111	GO:0010075: regulation of meristem growth	1.11E-02
112	GO:0009767: photosynthetic electron transport chain	1.11E-02
113	GO:0010588: cotyledon vascular tissue pattern formation	1.11E-02
114	GO:0010102: lateral root morphogenesis	1.11E-02
115	GO:0010207: photosystem II assembly	1.21E-02
116	GO:0009266: response to temperature stimulus	1.21E-02
117	GO:0009934: regulation of meristem structural organization	1.21E-02
118	GO:0010143: cutin biosynthetic process	1.21E-02
119	GO:0010020: chloroplast fission	1.21E-02
120	GO:0009735: response to cytokinin	1.37E-02
121	GO:0010025: wax biosynthetic process	1.41E-02
122	GO:0010187: negative regulation of seed germination	1.52E-02
123	GO:0005992: trehalose biosynthetic process	1.52E-02
124	GO:0006418: tRNA aminoacylation for protein translation	1.63E-02
125	GO:0048367: shoot system development	1.68E-02
126	GO:0048511: rhythmic process	1.75E-02
127	GO:0048278: vesicle docking	1.75E-02
128	GO:0009733: response to auxin	1.80E-02
129	GO:0006730: one-carbon metabolic process	1.86E-02
130	GO:0007005: mitochondrion organization	1.86E-02
131	GO:0031348: negative regulation of defense response	1.86E-02
132	GO:0030245: cellulose catabolic process	1.86E-02
133	GO:0009686: gibberellin biosynthetic process	1.98E-02
134	GO:0016117: carotenoid biosynthetic process	2.23E-02
135	GO:0051028: mRNA transport	2.23E-02
136	GO:0008284: positive regulation of cell proliferation	2.23E-02
137	GO:0006457: protein folding	2.30E-02
138	GO:0042335: cuticle development	2.35E-02
139	GO:0080022: primary root development	2.35E-02
140	GO:0000413: protein peptidyl-prolyl isomerization	2.35E-02
141	GO:0010087: phloem or xylem histogenesis	2.35E-02
142	GO:0048653: anther development	2.35E-02
143	GO:0006520: cellular amino acid metabolic process	2.48E-02
144	GO:0010305: leaf vascular tissue pattern formation	2.48E-02
145	GO:0009741: response to brassinosteroid	2.48E-02
146	GO:0009958: positive gravitropism	2.48E-02
147	GO:0016042: lipid catabolic process	2.50E-02
148	GO:0048544: recognition of pollen	2.61E-02
149	GO:0061025: membrane fusion	2.61E-02
150	GO:0042752: regulation of circadian rhythm	2.61E-02
151	GO:0009646: response to absence of light	2.61E-02
152	GO:0009790: embryo development	2.87E-02
153	GO:0005975: carbohydrate metabolic process	3.00E-02
154	GO:0032502: developmental process	3.02E-02
155	GO:0010583: response to cyclopentenone	3.02E-02
156	GO:0010090: trichome morphogenesis	3.16E-02
157	GO:1901657: glycosyl compound metabolic process	3.16E-02
158	GO:0010252: auxin homeostasis	3.31E-02
159	GO:0007623: circadian rhythm	3.39E-02
160	GO:0010027: thylakoid membrane organization	3.75E-02
161	GO:0010029: regulation of seed germination	3.90E-02
162	GO:0009734: auxin-activated signaling pathway	3.97E-02
163	GO:0009627: systemic acquired resistance	4.05E-02
164	GO:0006906: vesicle fusion	4.05E-02
165	GO:0008219: cell death	4.53E-02
166	GO:0048481: plant ovule development	4.53E-02
167	GO:0009832: plant-type cell wall biogenesis	4.69E-02
168	GO:0000160: phosphorelay signal transduction system	4.69E-02

Rank	GO Term	Adjusted P value
1	GO:0004822: isoleucine-tRNA ligase activity	0.00E+00
2	GO:0008721: D-serine ammonia-lyase activity	0.00E+00
3	GO:0090471: 9,15,9'-tri-cis-zeta-carotene isomerase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
6	GO:0005363: maltose transmembrane transporter activity	0.00E+00
7	GO:0010303: limit dextrinase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0046428: 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity	0.00E+00
10	GO:0030378: serine racemase activity	0.00E+00
11	GO:0003941: L-serine ammonia-lyase activity	0.00E+00
12	GO:0051060: pullulanase activity	0.00E+00
13	GO:0005504: fatty acid binding	1.37E-05
14	GO:0045430: chalcone isomerase activity	5.52E-05
15	GO:0005528: FK506 binding	1.02E-04
16	GO:0019843: rRNA binding	1.27E-04
17	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.68E-04
18	GO:0004853: uroporphyrinogen decarboxylase activity	2.89E-04
19	GO:0004645: phosphorylase activity	2.89E-04
20	GO:0010313: phytochrome binding	2.89E-04
21	GO:0019203: carbohydrate phosphatase activity	2.89E-04
22	GO:0030785: [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity	2.89E-04
23	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.89E-04
24	GO:0050139: nicotinate-N-glucosyltransferase activity	2.89E-04
25	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.89E-04
26	GO:0008184: glycogen phosphorylase activity	2.89E-04
27	GO:0050308: sugar-phosphatase activity	2.89E-04
28	GO:0004134: 4-alpha-glucanotransferase activity	2.89E-04
29	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	6.34E-04
30	GO:0004614: phosphoglucomutase activity	6.34E-04
31	GO:0003839: gamma-glutamylcyclotransferase activity	6.34E-04
32	GO:0004817: cysteine-tRNA ligase activity	6.34E-04
33	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	6.34E-04
34	GO:0008493: tetracycline transporter activity	6.34E-04
35	GO:0016630: protochlorophyllide reductase activity	6.34E-04
36	GO:0044183: protein binding involved in protein folding	6.77E-04
37	GO:0015238: drug transmembrane transporter activity	8.71E-04
38	GO:0008266: poly(U) RNA binding	9.86E-04
39	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.03E-03
40	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	1.03E-03
41	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.03E-03
42	GO:0002161: aminoacyl-tRNA editing activity	1.03E-03
43	GO:0004148: dihydrolipoyl dehydrogenase activity	1.03E-03
44	GO:0016851: magnesium chelatase activity	1.47E-03
45	GO:0016149: translation release factor activity, codon specific	1.47E-03
46	GO:0043023: ribosomal large subunit binding	1.47E-03
47	GO:0003825: alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity	1.47E-03
48	GO:0004375: glycine dehydrogenase (decarboxylating) activity	1.47E-03
49	GO:0004659: prenyltransferase activity	1.97E-03
50	GO:0016279: protein-lysine N-methyltransferase activity	1.97E-03
51	GO:0003959: NADPH dehydrogenase activity	2.52E-03
52	GO:0004556: alpha-amylase activity	3.11E-03
53	GO:0090447: glycerol-3-phosphate 2-O-acyltransferase activity	3.11E-03
54	GO:2001070: starch binding	3.11E-03
55	GO:0080030: methyl indole-3-acetate esterase activity	3.11E-03
56	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.11E-03
57	GO:0004366: glycerol-3-phosphate O-acyltransferase activity	3.11E-03
58	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	3.74E-03
59	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.74E-03
60	GO:0016791: phosphatase activity	3.99E-03
61	GO:0008237: metallopeptidase activity	4.24E-03
62	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	4.75E-03
63	GO:0008173: RNA methyltransferase activity	5.87E-03
64	GO:0046914: transition metal ion binding	5.87E-03
65	GO:0015297: antiporter activity	6.53E-03
66	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	6.65E-03
67	GO:0003747: translation release factor activity	6.65E-03
68	GO:0004222: metalloendopeptidase activity	6.85E-03
69	GO:0047372: acylglycerol lipase activity	9.22E-03
70	GO:0000049: tRNA binding	1.01E-02
71	GO:0004089: carbonate dehydratase activity	1.11E-02
72	GO:0008083: growth factor activity	1.21E-02
73	GO:0016788: hydrolase activity, acting on ester bonds	1.24E-02
74	GO:0008146: sulfotransferase activity	1.31E-02
75	GO:0102337: 3-oxo-cerotoyl-CoA synthase activity	1.41E-02
76	GO:0102338: 3-oxo-lignoceronyl-CoA synthase activity	1.41E-02
77	GO:0003887: DNA-directed DNA polymerase activity	1.41E-02
78	GO:0102336: 3-oxo-arachidoyl-CoA synthase activity	1.41E-02
79	GO:0016298: lipase activity	1.42E-02
80	GO:0004497: monooxygenase activity	1.59E-02
81	GO:0043424: protein histidine kinase binding	1.63E-02
82	GO:0004176: ATP-dependent peptidase activity	1.75E-02
83	GO:0033612: receptor serine/threonine kinase binding	1.75E-02
84	GO:0051082: unfolded protein binding	1.96E-02
85	GO:0008810: cellulase activity	1.98E-02
86	GO:0003727: single-stranded RNA binding	2.10E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	2.23E-02
88	GO:0046983: protein dimerization activity	2.42E-02
89	GO:0001085: RNA polymerase II transcription factor binding	2.48E-02
90	GO:0005507: copper ion binding	2.64E-02
91	GO:0019825: oxygen binding	2.64E-02
92	GO:0030170: pyridoxal phosphate binding	2.73E-02
93	GO:0004252: serine-type endopeptidase activity	2.73E-02
94	GO:0009055: electron carrier activity	2.83E-02
95	GO:0000156: phosphorelay response regulator activity	3.16E-02
96	GO:0003684: damaged DNA binding	3.31E-02
97	GO:0016597: amino acid binding	3.60E-02
98	GO:0005509: calcium ion binding	3.93E-02
99	GO:0102483: scopolin beta-glucosidase activity	4.21E-02
100	GO:0008236: serine-type peptidase activity	4.37E-02
101	GO:0003735: structural constituent of ribosome	4.67E-02

Rank	GO Term	Adjusted P value
1	GO:0009571: proplastid stroma	0.00E+00
2	GO:0009507: chloroplast	1.37E-21
3	GO:0009570: chloroplast stroma	2.63E-21
4	GO:0009941: chloroplast envelope	2.24E-11
5	GO:0009535: chloroplast thylakoid membrane	1.81E-10
6	GO:0009579: thylakoid	2.29E-08
7	GO:0009534: chloroplast thylakoid	2.42E-08
8	GO:0009543: chloroplast thylakoid lumen	4.46E-08
9	GO:0031977: thylakoid lumen	1.43E-05
10	GO:0031969: chloroplast membrane	2.10E-05
11	GO:0009654: photosystem II oxygen evolving complex	1.18E-04
12	GO:0009547: plastid ribosome	2.89E-04
13	GO:0019898: extrinsic component of membrane	3.32E-04
14	GO:0010319: stromule	5.05E-04
15	GO:0010007: magnesium chelatase complex	1.03E-03
16	GO:0005960: glycine cleavage complex	1.47E-03
17	GO:0009544: chloroplast ATP synthase complex	1.97E-03
18	GO:0009536: plastid	2.22E-03
19	GO:0009840: chloroplastic endopeptidase Clp complex	3.74E-03
20	GO:0009533: chloroplast stromal thylakoid	4.41E-03
21	GO:0009501: amyloplast	5.12E-03
22	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.65E-03
23	GO:0090404: pollen tube tip	9.22E-03
24	GO:0046658: anchored component of plasma membrane	9.91E-03
25	GO:0000311: plastid large ribosomal subunit	1.01E-02
26	GO:0005840: ribosome	1.60E-02
27	GO:0009532: plastid stroma	1.75E-02
28	GO:0009706: chloroplast inner membrane	1.96E-02
29	GO:0005770: late endosome	2.48E-02
30	GO:0016020: membrane	3.13E-02
31	GO:0030529: intracellular ribonucleoprotein complex	3.75E-02
32	GO:0005667: transcription factor complex	4.05E-02
33	GO:0005643: nuclear pore	4.53E-02
34	GO:0009707: chloroplast outer membrane	4.53E-02