GO Enrichment Analysis of Co-expressed Genes with
AT2G20290
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0046471: phosphatidylglycerol metabolic process | 0.00E+00 |
| 2 | GO:0052865: 1-deoxy-D-xylulose 5-phosphate biosynthetic process | 0.00E+00 |
| 3 | GO:1905157: positive regulation of photosynthesis | 0.00E+00 |
| 4 | GO:1901918: negative regulation of exoribonuclease activity | 0.00E+00 |
| 5 | GO:0016118: carotenoid catabolic process | 0.00E+00 |
| 6 | GO:0009657: plastid organization | 6.03E-06 |
| 7 | GO:0015994: chlorophyll metabolic process | 3.78E-05 |
| 8 | GO:0006353: DNA-templated transcription, termination | 2.06E-04 |
| 9 | GO:0019252: starch biosynthetic process | 2.16E-04 |
| 10 | GO:0009090: homoserine biosynthetic process | 2.32E-04 |
| 11 | GO:0046467: membrane lipid biosynthetic process | 2.32E-04 |
| 12 | GO:0015671: oxygen transport | 2.32E-04 |
| 13 | GO:0065002: intracellular protein transmembrane transport | 2.32E-04 |
| 14 | GO:0019276: UDP-N-acetylgalactosamine metabolic process | 2.32E-04 |
| 15 | GO:0010028: xanthophyll cycle | 2.32E-04 |
| 16 | GO:0034337: RNA folding | 2.32E-04 |
| 17 | GO:0006047: UDP-N-acetylglucosamine metabolic process | 2.32E-04 |
| 18 | GO:0043953: protein transport by the Tat complex | 2.32E-04 |
| 19 | GO:0000476: maturation of 4.5S rRNA | 2.32E-04 |
| 20 | GO:0000967: rRNA 5'-end processing | 2.32E-04 |
| 21 | GO:0005982: starch metabolic process | 3.67E-04 |
| 22 | GO:0015995: chlorophyll biosynthetic process | 4.81E-04 |
| 23 | GO:0009773: photosynthetic electron transport in photosystem I | 4.97E-04 |
| 24 | GO:0071457: cellular response to ozone | 5.15E-04 |
| 25 | GO:0016124: xanthophyll catabolic process | 5.15E-04 |
| 26 | GO:0000256: allantoin catabolic process | 5.15E-04 |
| 27 | GO:0016122: xanthophyll metabolic process | 5.15E-04 |
| 28 | GO:0016121: carotene catabolic process | 5.15E-04 |
| 29 | GO:0034470: ncRNA processing | 5.15E-04 |
| 30 | GO:0080029: cellular response to boron-containing substance levels | 5.15E-04 |
| 31 | GO:0006898: receptor-mediated endocytosis | 5.15E-04 |
| 32 | GO:0010020: chloroplast fission | 7.26E-04 |
| 33 | GO:0006048: UDP-N-acetylglucosamine biosynthetic process | 8.37E-04 |
| 34 | GO:0090391: granum assembly | 8.37E-04 |
| 35 | GO:0010136: ureide catabolic process | 8.37E-04 |
| 36 | GO:0006696: ergosterol biosynthetic process | 8.37E-04 |
| 37 | GO:0005977: glycogen metabolic process | 8.37E-04 |
| 38 | GO:0010114: response to red light | 1.01E-03 |
| 39 | GO:0009768: photosynthesis, light harvesting in photosystem I | 1.09E-03 |
| 40 | GO:0071786: endoplasmic reticulum tubular network organization | 1.19E-03 |
| 41 | GO:0046713: borate transport | 1.19E-03 |
| 42 | GO:0009067: aspartate family amino acid biosynthetic process | 1.19E-03 |
| 43 | GO:1902358: sulfate transmembrane transport | 1.19E-03 |
| 44 | GO:0045338: farnesyl diphosphate metabolic process | 1.19E-03 |
| 45 | GO:0006020: inositol metabolic process | 1.19E-03 |
| 46 | GO:0071484: cellular response to light intensity | 1.19E-03 |
| 47 | GO:0009152: purine ribonucleotide biosynthetic process | 1.19E-03 |
| 48 | GO:0046653: tetrahydrofolate metabolic process | 1.19E-03 |
| 49 | GO:0006145: purine nucleobase catabolic process | 1.19E-03 |
| 50 | GO:0009052: pentose-phosphate shunt, non-oxidative branch | 1.19E-03 |
| 51 | GO:0006021: inositol biosynthetic process | 1.59E-03 |
| 52 | GO:0071483: cellular response to blue light | 1.59E-03 |
| 53 | GO:0010021: amylopectin biosynthetic process | 1.59E-03 |
| 54 | GO:0071486: cellular response to high light intensity | 1.59E-03 |
| 55 | GO:0009765: photosynthesis, light harvesting | 1.59E-03 |
| 56 | GO:0005975: carbohydrate metabolic process | 1.73E-03 |
| 57 | GO:0006564: L-serine biosynthetic process | 2.03E-03 |
| 58 | GO:0009904: chloroplast accumulation movement | 2.03E-03 |
| 59 | GO:0071493: cellular response to UV-B | 2.03E-03 |
| 60 | GO:1902456: regulation of stomatal opening | 2.50E-03 |
| 61 | GO:0046855: inositol phosphate dephosphorylation | 2.50E-03 |
| 62 | GO:0010190: cytochrome b6f complex assembly | 2.50E-03 |
| 63 | GO:0009643: photosynthetic acclimation | 2.50E-03 |
| 64 | GO:0010304: PSII associated light-harvesting complex II catabolic process | 2.50E-03 |
| 65 | GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | 2.50E-03 |
| 66 | GO:0009228: thiamine biosynthetic process | 2.50E-03 |
| 67 | GO:0032502: developmental process | 2.56E-03 |
| 68 | GO:0015979: photosynthesis | 2.71E-03 |
| 69 | GO:1901657: glycosyl compound metabolic process | 2.73E-03 |
| 70 | GO:1901259: chloroplast rRNA processing | 3.00E-03 |
| 71 | GO:0009903: chloroplast avoidance movement | 3.00E-03 |
| 72 | GO:0009088: threonine biosynthetic process | 3.00E-03 |
| 73 | GO:0071333: cellular response to glucose stimulus | 3.00E-03 |
| 74 | GO:0009645: response to low light intensity stimulus | 3.54E-03 |
| 75 | GO:0009395: phospholipid catabolic process | 3.54E-03 |
| 76 | GO:1900056: negative regulation of leaf senescence | 3.54E-03 |
| 77 | GO:0010196: nonphotochemical quenching | 3.54E-03 |
| 78 | GO:0008272: sulfate transport | 3.54E-03 |
| 79 | GO:0009769: photosynthesis, light harvesting in photosystem II | 3.54E-03 |
| 80 | GO:0070413: trehalose metabolism in response to stress | 4.10E-03 |
| 81 | GO:0010078: maintenance of root meristem identity | 4.10E-03 |
| 82 | GO:0016559: peroxisome fission | 4.10E-03 |
| 83 | GO:0042255: ribosome assembly | 4.10E-03 |
| 84 | GO:0043562: cellular response to nitrogen levels | 4.70E-03 |
| 85 | GO:0015996: chlorophyll catabolic process | 4.70E-03 |
| 86 | GO:0019430: removal of superoxide radicals | 4.70E-03 |
| 87 | GO:0009813: flavonoid biosynthetic process | 4.73E-03 |
| 88 | GO:0006098: pentose-phosphate shunt | 5.32E-03 |
| 89 | GO:0019432: triglyceride biosynthetic process | 5.32E-03 |
| 90 | GO:0009821: alkaloid biosynthetic process | 5.32E-03 |
| 91 | GO:0009086: methionine biosynthetic process | 5.97E-03 |
| 92 | GO:0010380: regulation of chlorophyll biosynthetic process | 5.97E-03 |
| 93 | GO:0009641: shade avoidance | 6.65E-03 |
| 94 | GO:0006631: fatty acid metabolic process | 6.78E-03 |
| 95 | GO:0009089: lysine biosynthetic process via diaminopimelate | 7.35E-03 |
| 96 | GO:0009684: indoleacetic acid biosynthetic process | 7.35E-03 |
| 97 | GO:0006790: sulfur compound metabolic process | 8.08E-03 |
| 98 | GO:0006094: gluconeogenesis | 8.84E-03 |
| 99 | GO:0010588: cotyledon vascular tissue pattern formation | 8.84E-03 |
| 100 | GO:0007015: actin filament organization | 9.62E-03 |
| 101 | GO:0010223: secondary shoot formation | 9.62E-03 |
| 102 | GO:0048467: gynoecium development | 9.62E-03 |
| 103 | GO:0046854: phosphatidylinositol phosphorylation | 1.04E-02 |
| 104 | GO:0080167: response to karrikin | 1.05E-02 |
| 105 | GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway | 1.10E-02 |
| 106 | GO:0006636: unsaturated fatty acid biosynthetic process | 1.13E-02 |
| 107 | GO:0009833: plant-type primary cell wall biogenesis | 1.13E-02 |
| 108 | GO:0019762: glucosinolate catabolic process | 1.13E-02 |
| 109 | GO:0005992: trehalose biosynthetic process | 1.21E-02 |
| 110 | GO:0016114: terpenoid biosynthetic process | 1.39E-02 |
| 111 | GO:0019915: lipid storage | 1.39E-02 |
| 112 | GO:0009269: response to desiccation | 1.39E-02 |
| 113 | GO:0030433: ubiquitin-dependent ERAD pathway | 1.48E-02 |
| 114 | GO:0019748: secondary metabolic process | 1.48E-02 |
| 115 | GO:0016226: iron-sulfur cluster assembly | 1.48E-02 |
| 116 | GO:0071215: cellular response to abscisic acid stimulus | 1.57E-02 |
| 117 | GO:0032259: methylation | 1.64E-02 |
| 118 | GO:0006810: transport | 1.64E-02 |
| 119 | GO:0009306: protein secretion | 1.67E-02 |
| 120 | GO:0080022: primary root development | 1.87E-02 |
| 121 | GO:0009058: biosynthetic process | 1.87E-02 |
| 122 | GO:0010087: phloem or xylem histogenesis | 1.87E-02 |
| 123 | GO:0006520: cellular amino acid metabolic process | 1.97E-02 |
| 124 | GO:0009741: response to brassinosteroid | 1.97E-02 |
| 125 | GO:0071472: cellular response to salt stress | 1.97E-02 |
| 126 | GO:0009958: positive gravitropism | 1.97E-02 |
| 127 | GO:0055114: oxidation-reduction process | 2.08E-02 |
| 128 | GO:0048825: cotyledon development | 2.18E-02 |
| 129 | GO:0009851: auxin biosynthetic process | 2.18E-02 |
| 130 | GO:0071554: cell wall organization or biogenesis | 2.29E-02 |
| 131 | GO:0009630: gravitropism | 2.40E-02 |
| 132 | GO:0009567: double fertilization forming a zygote and endosperm | 2.62E-02 |
| 133 | GO:0010027: thylakoid membrane organization | 2.98E-02 |
| 134 | GO:0016126: sterol biosynthetic process | 2.98E-02 |
| 135 | GO:0006906: vesicle fusion | 3.22E-02 |
| 136 | GO:0016311: dephosphorylation | 3.47E-02 |
| 137 | GO:0009416: response to light stimulus | 3.54E-02 |
| 138 | GO:0030244: cellulose biosynthetic process | 3.59E-02 |
| 139 | GO:0018298: protein-chromophore linkage | 3.59E-02 |
| 140 | GO:0009658: chloroplast organization | 3.79E-02 |
| 141 | GO:0010218: response to far red light | 3.85E-02 |
| 142 | GO:0006811: ion transport | 3.85E-02 |
| 143 | GO:0009910: negative regulation of flower development | 3.98E-02 |
| 144 | GO:0048527: lateral root development | 3.98E-02 |
| 145 | GO:0009637: response to blue light | 4.25E-02 |
| 146 | GO:0009853: photorespiration | 4.25E-02 |
| 147 | GO:0034599: cellular response to oxidative stress | 4.39E-02 |
| 148 | GO:0006887: exocytosis | 4.81E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0036361: racemase activity, acting on amino acids and derivatives | 0.00E+00 |
| 2 | GO:0080082: esculin beta-glucosidase activity | 0.00E+00 |
| 3 | GO:0008807: carboxyvinyl-carboxyphosphonate phosphorylmutase activity | 0.00E+00 |
| 4 | GO:0016855: racemase and epimerase activity, acting on amino acids and derivatives | 0.00E+00 |
| 5 | GO:0080081: 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity | 0.00E+00 |
| 6 | GO:0047668: amygdalin beta-glucosidase activity | 0.00E+00 |
| 7 | GO:0080083: beta-gentiobiose beta-glucosidase activity | 0.00E+00 |
| 8 | GO:0052637: delta 3-trans-hexadecenoic acid phosphatidylglycerol desaturase activity | 0.00E+00 |
| 9 | GO:0046422: violaxanthin de-epoxidase activity | 0.00E+00 |
| 10 | GO:0004567: beta-mannosidase activity | 0.00E+00 |
| 11 | GO:0009011: starch synthase activity | 3.78E-05 |
| 12 | GO:0003977: UDP-N-acetylglucosamine diphosphorylase activity | 2.32E-04 |
| 13 | GO:0034256: chlorophyll(ide) b reductase activity | 2.32E-04 |
| 14 | GO:0015168: glycerol transmembrane transporter activity | 2.32E-04 |
| 15 | GO:0045486: naringenin 3-dioxygenase activity | 2.32E-04 |
| 16 | GO:0005344: oxygen transporter activity | 2.32E-04 |
| 17 | GO:0052630: UDP-N-acetylgalactosamine diphosphorylase activity | 2.32E-04 |
| 18 | GO:0030794: (S)-coclaurine-N-methyltransferase activity | 2.32E-04 |
| 19 | GO:0080079: cellobiose glucosidase activity | 2.32E-04 |
| 20 | GO:0004856: xylulokinase activity | 2.32E-04 |
| 21 | GO:0080097: L-tryptophan:pyruvate aminotransferase activity | 5.15E-04 |
| 22 | GO:0019156: isoamylase activity | 5.15E-04 |
| 23 | GO:0004310: farnesyl-diphosphate farnesyltransferase activity | 5.15E-04 |
| 24 | GO:0047746: chlorophyllase activity | 5.15E-04 |
| 25 | GO:0050362: L-tryptophan:2-oxoglutarate aminotransferase activity | 5.15E-04 |
| 26 | GO:0009977: proton motive force dependent protein transmembrane transporter activity | 5.15E-04 |
| 27 | GO:0004617: phosphoglycerate dehydrogenase activity | 5.15E-04 |
| 28 | GO:0008661: 1-deoxy-D-xylulose-5-phosphate synthase activity | 5.15E-04 |
| 29 | GO:0052832: inositol monophosphate 3-phosphatase activity | 5.15E-04 |
| 30 | GO:0033201: alpha-1,4-glucan synthase activity | 5.15E-04 |
| 31 | GO:0047158: sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity | 5.15E-04 |
| 32 | GO:0008934: inositol monophosphate 1-phosphatase activity | 5.15E-04 |
| 33 | GO:0052833: inositol monophosphate 4-phosphatase activity | 5.15E-04 |
| 34 | GO:0018708: thiol S-methyltransferase activity | 5.15E-04 |
| 35 | GO:0004412: homoserine dehydrogenase activity | 5.15E-04 |
| 36 | GO:0004751: ribose-5-phosphate isomerase activity | 8.37E-04 |
| 37 | GO:0016742: hydroxymethyl-, formyl- and related transferase activity | 8.37E-04 |
| 38 | GO:0008864: formyltetrahydrofolate deformylase activity | 8.37E-04 |
| 39 | GO:0004373: glycogen (starch) synthase activity | 8.37E-04 |
| 40 | GO:0004848: ureidoglycolate hydrolase activity | 8.37E-04 |
| 41 | GO:0031409: pigment binding | 9.01E-04 |
| 42 | GO:0016851: magnesium chelatase activity | 1.19E-03 |
| 43 | GO:0022890: inorganic cation transmembrane transporter activity | 1.19E-03 |
| 44 | GO:0046715: borate transmembrane transporter activity | 1.19E-03 |
| 45 | GO:0004072: aspartate kinase activity | 1.19E-03 |
| 46 | GO:0003727: single-stranded RNA binding | 1.55E-03 |
| 47 | GO:0015204: urea transmembrane transporter activity | 1.59E-03 |
| 48 | GO:0045430: chalcone isomerase activity | 1.59E-03 |
| 49 | GO:0045549: 9-cis-epoxycarotenoid dioxygenase activity | 2.03E-03 |
| 50 | GO:0016846: carbon-sulfur lyase activity | 2.03E-03 |
| 51 | GO:0016773: phosphotransferase activity, alcohol group as acceptor | 2.03E-03 |
| 52 | GO:0004556: alpha-amylase activity | 2.50E-03 |
| 53 | GO:2001070: starch binding | 2.50E-03 |
| 54 | GO:0004332: fructose-bisphosphate aldolase activity | 2.50E-03 |
| 55 | GO:0004784: superoxide dismutase activity | 2.50E-03 |
| 56 | GO:0008441: 3'(2'),5'-bisphosphate nucleotidase activity | 3.00E-03 |
| 57 | GO:0016597: amino acid binding | 3.26E-03 |
| 58 | GO:0016168: chlorophyll binding | 3.65E-03 |
| 59 | GO:0102483: scopolin beta-glucosidase activity | 4.07E-03 |
| 60 | GO:0016491: oxidoreductase activity | 4.23E-03 |
| 61 | GO:0008271: secondary active sulfate transmembrane transporter activity | 4.70E-03 |
| 62 | GO:0016844: strictosidine synthase activity | 5.97E-03 |
| 63 | GO:0003993: acid phosphatase activity | 5.97E-03 |
| 64 | GO:0008422: beta-glucosidase activity | 6.23E-03 |
| 65 | GO:0008559: xenobiotic-transporting ATPase activity | 7.35E-03 |
| 66 | GO:0047372: acylglycerol lipase activity | 7.35E-03 |
| 67 | GO:0015386: potassium:proton antiporter activity | 7.35E-03 |
| 68 | GO:0008168: methyltransferase activity | 7.63E-03 |
| 69 | GO:0015116: sulfate transmembrane transporter activity | 8.08E-03 |
| 70 | GO:0016788: hydrolase activity, acting on ester bonds | 8.20E-03 |
| 71 | GO:0004022: alcohol dehydrogenase (NAD) activity | 8.84E-03 |
| 72 | GO:0004565: beta-galactosidase activity | 8.84E-03 |
| 73 | GO:0003725: double-stranded RNA binding | 8.84E-03 |
| 74 | GO:0042973: glucan endo-1,3-beta-D-glucosidase activity | 9.62E-03 |
| 75 | GO:0051536: iron-sulfur cluster binding | 1.21E-02 |
| 76 | GO:0031418: L-ascorbic acid binding | 1.21E-02 |
| 77 | GO:0015079: potassium ion transmembrane transporter activity | 1.30E-02 |
| 78 | GO:0005216: ion channel activity | 1.30E-02 |
| 79 | GO:0016779: nucleotidyltransferase activity | 1.48E-02 |
| 80 | GO:0030570: pectate lyase activity | 1.57E-02 |
| 81 | GO:0016760: cellulose synthase (UDP-forming) activity | 1.57E-02 |
| 82 | GO:0019843: rRNA binding | 1.78E-02 |
| 83 | GO:0005525: GTP binding | 2.02E-02 |
| 84 | GO:0015299: solute:proton antiporter activity | 2.07E-02 |
| 85 | GO:0016759: cellulose synthase activity | 2.62E-02 |
| 86 | GO:0016791: phosphatase activity | 2.62E-02 |
| 87 | GO:0008237: metallopeptidase activity | 2.74E-02 |
| 88 | GO:0016413: O-acetyltransferase activity | 2.86E-02 |
| 89 | GO:0015250: water channel activity | 2.98E-02 |
| 90 | GO:0042802: identical protein binding | 3.12E-02 |
| 91 | GO:0003824: catalytic activity | 3.16E-02 |
| 92 | GO:0008757: S-adenosylmethionine-dependent methyltransferase activity | 3.47E-02 |
| 93 | GO:0016614: oxidoreductase activity, acting on CH-OH group of donors | 3.98E-02 |
| 94 | GO:0003746: translation elongation factor activity | 4.25E-02 |
| 95 | GO:0000149: SNARE binding | 4.53E-02 |
| 96 | GO:0050661: NADP binding | 4.67E-02 |
| 97 | GO:0004553: hydrolase activity, hydrolyzing O-glycosyl compounds | 4.97E-02 |
| Rank | GO Term | Adjusted P value |
|---|---|---|
| 1 | GO:0043235: receptor complex | 0.00E+00 |
| 2 | GO:0009507: chloroplast | 1.26E-20 |
| 3 | GO:0009534: chloroplast thylakoid | 5.27E-07 |
| 4 | GO:0009535: chloroplast thylakoid membrane | 6.71E-07 |
| 5 | GO:0009570: chloroplast stroma | 8.12E-06 |
| 6 | GO:0033281: TAT protein transport complex | 9.11E-06 |
| 7 | GO:0031361: integral component of thylakoid membrane | 2.32E-04 |
| 8 | GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone) | 3.09E-04 |
| 9 | GO:0009941: chloroplast envelope | 3.79E-04 |
| 10 | GO:0031969: chloroplast membrane | 4.51E-04 |
| 11 | GO:0010287: plastoglobule | 4.66E-04 |
| 12 | GO:0043036: starch grain | 5.15E-04 |
| 13 | GO:0030076: light-harvesting complex | 8.11E-04 |
| 14 | GO:0010007: magnesium chelatase complex | 8.37E-04 |
| 15 | GO:0031977: thylakoid lumen | 9.15E-04 |
| 16 | GO:0071782: endoplasmic reticulum tubular network | 1.19E-03 |
| 17 | GO:0030658: transport vesicle membrane | 1.19E-03 |
| 18 | GO:0009526: plastid envelope | 1.59E-03 |
| 19 | GO:0009517: PSII associated light-harvesting complex II | 1.59E-03 |
| 20 | GO:0009543: chloroplast thylakoid lumen | 3.05E-03 |
| 21 | GO:0031982: vesicle | 4.10E-03 |
| 22 | GO:0009501: amyloplast | 4.10E-03 |
| 23 | GO:0071458: integral component of cytoplasmic side of endoplasmic reticulum membrane | 4.10E-03 |
| 24 | GO:0031901: early endosome membrane | 5.32E-03 |
| 25 | GO:0032040: small-subunit processome | 8.08E-03 |
| 26 | GO:0009508: plastid chromosome | 8.84E-03 |
| 27 | GO:0030095: chloroplast photosystem II | 9.62E-03 |
| 28 | GO:0005886: plasma membrane | 9.63E-03 |
| 29 | GO:0005773: vacuole | 1.02E-02 |
| 30 | GO:0009579: thylakoid | 1.26E-02 |
| 31 | GO:0042651: thylakoid membrane | 1.30E-02 |
| 32 | GO:0009654: photosystem II oxygen evolving complex | 1.30E-02 |
| 33 | GO:0015935: small ribosomal subunit | 1.39E-02 |
| 34 | GO:0009522: photosystem I | 2.07E-02 |
| 35 | GO:0009523: photosystem II | 2.18E-02 |
| 36 | GO:0019898: extrinsic component of membrane | 2.18E-02 |
| 37 | GO:0009295: nucleoid | 2.74E-02 |
| 38 | GO:0009707: chloroplast outer membrane | 3.59E-02 |
| 39 | GO:0000325: plant-type vacuole | 3.98E-02 |
| 40 | GO:0031201: SNARE complex | 4.81E-02 |