co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G19940

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0061157: mRNA destabilization	0.00E+00
2	GO:0002184: cytoplasmic translational termination	0.00E+00
3	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
4	GO:0007638: mechanosensory behavior	0.00E+00
5	GO:0017038: protein import	0.00E+00
6	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
7	GO:0015995: chlorophyll biosynthetic process	4.27E-07
8	GO:0009733: response to auxin	7.20E-07
9	GO:0009734: auxin-activated signaling pathway	1.82E-06
10	GO:0005983: starch catabolic process	2.04E-06
11	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	8.81E-06
12	GO:0046620: regulation of organ growth	1.33E-05
13	GO:0040008: regulation of growth	6.92E-05
14	GO:0030488: tRNA methylation	2.54E-04
15	GO:0015904: tetracycline transport	3.70E-04
16	GO:0000023: maltose metabolic process	3.70E-04
17	GO:0000025: maltose catabolic process	3.70E-04
18	GO:0005980: glycogen catabolic process	3.70E-04
19	GO:0030198: extracellular matrix organization	3.70E-04
20	GO:0006438: valyl-tRNA aminoacylation	3.70E-04
21	GO:0046520: sphingoid biosynthetic process	3.70E-04
22	GO:0070509: calcium ion import	3.70E-04
23	GO:0010480: microsporocyte differentiation	3.70E-04
24	GO:0009638: phototropism	7.16E-04
25	GO:0006779: porphyrin-containing compound biosynthetic process	7.16E-04
26	GO:0006568: tryptophan metabolic process	8.05E-04
27	GO:2000123: positive regulation of stomatal complex development	8.05E-04
28	GO:0010275: NAD(P)H dehydrogenase complex assembly	8.05E-04
29	GO:0009629: response to gravity	8.05E-04
30	GO:0019388: galactose catabolic process	8.05E-04
31	GO:0007154: cell communication	8.05E-04
32	GO:0018026: peptidyl-lysine monomethylation	8.05E-04
33	GO:0071497: cellular response to freezing	8.05E-04
34	GO:0009786: regulation of asymmetric cell division	8.05E-04
35	GO:0031648: protein destabilization	8.05E-04
36	GO:0009641: shade avoidance	8.35E-04
37	GO:0006782: protoporphyrinogen IX biosynthetic process	8.35E-04
38	GO:0048829: root cap development	8.35E-04
39	GO:0010588: cotyledon vascular tissue pattern formation	1.24E-03
40	GO:2000012: regulation of auxin polar transport	1.24E-03
41	GO:0006006: glucose metabolic process	1.24E-03
42	GO:0033591: response to L-ascorbic acid	1.30E-03
43	GO:1902448: positive regulation of shade avoidance	1.30E-03
44	GO:0042218: 1-aminocyclopropane-1-carboxylate biosynthetic process	1.30E-03
45	GO:0070588: calcium ion transmembrane transport	1.57E-03
46	GO:0007231: osmosensory signaling pathway	1.88E-03
47	GO:0009102: biotin biosynthetic process	1.88E-03
48	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.88E-03
49	GO:0009647: skotomorphogenesis	1.88E-03
50	GO:0010731: protein glutathionylation	1.88E-03
51	GO:0046739: transport of virus in multicellular host	1.88E-03
52	GO:0009590: detection of gravity	1.88E-03
53	GO:0009926: auxin polar transport	2.40E-03
54	GO:1901141: regulation of lignin biosynthetic process	2.52E-03
55	GO:0010109: regulation of photosynthesis	2.52E-03
56	GO:0009765: photosynthesis, light harvesting	2.52E-03
57	GO:0033500: carbohydrate homeostasis	2.52E-03
58	GO:2000038: regulation of stomatal complex development	2.52E-03
59	GO:0016123: xanthophyll biosynthetic process	3.23E-03
60	GO:0010375: stomatal complex patterning	3.23E-03
61	GO:0000304: response to singlet oxygen	3.23E-03
62	GO:0016120: carotene biosynthetic process	3.23E-03
63	GO:0048497: maintenance of floral organ identity	3.23E-03
64	GO:0010405: arabinogalactan protein metabolic process	3.99E-03
65	GO:0019288: isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	3.99E-03
66	GO:0009959: negative gravitropism	3.99E-03
67	GO:0016554: cytidine to uridine editing	3.99E-03
68	GO:0009913: epidermal cell differentiation	3.99E-03
69	GO:1902456: regulation of stomatal opening	3.99E-03
70	GO:0042793: transcription from plastid promoter	3.99E-03
71	GO:0018258: protein O-linked glycosylation via hydroxyproline	3.99E-03
72	GO:0033365: protein localization to organelle	3.99E-03
73	GO:0019252: starch biosynthetic process	4.43E-03
74	GO:0009658: chloroplast organization	4.57E-03
75	GO:0080086: stamen filament development	4.81E-03
76	GO:0042026: protein refolding	4.81E-03
77	GO:2000033: regulation of seed dormancy process	4.81E-03
78	GO:0006458: 'de novo' protein folding	4.81E-03
79	GO:0032502: developmental process	5.07E-03
80	GO:1901657: glycosyl compound metabolic process	5.40E-03
81	GO:0010161: red light signaling pathway	5.68E-03
82	GO:0048528: post-embryonic root development	5.68E-03
83	GO:0048437: floral organ development	5.68E-03
84	GO:0010444: guard mother cell differentiation	5.68E-03
85	GO:0030307: positive regulation of cell growth	5.68E-03
86	GO:0009742: brassinosteroid mediated signaling pathway	5.93E-03
87	GO:0000105: histidine biosynthetic process	6.61E-03
88	GO:0005978: glycogen biosynthetic process	6.61E-03
89	GO:0006605: protein targeting	6.61E-03
90	GO:0010027: thylakoid membrane organization	6.87E-03
91	GO:0010099: regulation of photomorphogenesis	7.58E-03
92	GO:0010497: plasmodesmata-mediated intercellular transport	7.58E-03
93	GO:0010100: negative regulation of photomorphogenesis	7.58E-03
94	GO:0032544: plastid translation	7.58E-03
95	GO:0009416: response to light stimulus	8.26E-03
96	GO:0000902: cell morphogenesis	8.60E-03
97	GO:0009835: fruit ripening	8.60E-03
98	GO:0051865: protein autoubiquitination	8.60E-03
99	GO:0006783: heme biosynthetic process	8.60E-03
100	GO:0009817: defense response to fungus, incompatible interaction	8.97E-03
101	GO:0000160: phosphorelay signal transduction system	9.44E-03
102	GO:0009813: flavonoid biosynthetic process	9.44E-03
103	GO:0009098: leucine biosynthetic process	9.67E-03
104	GO:1900865: chloroplast RNA modification	9.67E-03
105	GO:0010162: seed dormancy process	1.08E-02
106	GO:0006865: amino acid transport	1.09E-02
107	GO:0016042: lipid catabolic process	1.10E-02
108	GO:0006816: calcium ion transport	1.19E-02
109	GO:0009073: aromatic amino acid family biosynthetic process	1.19E-02
110	GO:0018119: peptidyl-cysteine S-nitrosylation	1.19E-02
111	GO:0048229: gametophyte development	1.19E-02
112	GO:0012501: programmed cell death	1.32E-02
113	GO:0006631: fatty acid metabolic process	1.36E-02
114	GO:0007275: multicellular organism development	1.37E-02
115	GO:0050826: response to freezing	1.44E-02
116	GO:0010075: regulation of meristem growth	1.44E-02
117	GO:0009725: response to hormone	1.44E-02
118	GO:0010102: lateral root morphogenesis	1.44E-02
119	GO:0009785: blue light signaling pathway	1.44E-02
120	GO:0009691: cytokinin biosynthetic process	1.44E-02
121	GO:0009640: photomorphogenesis	1.47E-02
122	GO:0009266: response to temperature stimulus	1.57E-02
123	GO:0009934: regulation of meristem structural organization	1.57E-02
124	GO:0010020: chloroplast fission	1.57E-02
125	GO:0090351: seedling development	1.70E-02
126	GO:0010030: positive regulation of seed germination	1.70E-02
127	GO:0000162: tryptophan biosynthetic process	1.84E-02
128	GO:0010187: negative regulation of seed germination	1.98E-02
129	GO:0009736: cytokinin-activated signaling pathway	1.99E-02
130	GO:0006418: tRNA aminoacylation for protein translation	2.12E-02
131	GO:0005975: carbohydrate metabolic process	2.14E-02
132	GO:0048511: rhythmic process	2.27E-02
133	GO:0061077: chaperone-mediated protein folding	2.27E-02
134	GO:0031408: oxylipin biosynthetic process	2.27E-02
135	GO:0003333: amino acid transmembrane transport	2.27E-02
136	GO:0030245: cellulose catabolic process	2.42E-02
137	GO:2000022: regulation of jasmonic acid mediated signaling pathway	2.42E-02
138	GO:0048367: shoot system development	2.43E-02
139	GO:0009693: ethylene biosynthetic process	2.58E-02
140	GO:0009686: gibberellin biosynthetic process	2.58E-02
141	GO:0006468: protein phosphorylation	2.66E-02
142	GO:0009624: response to nematode	2.84E-02
143	GO:0016117: carotenoid biosynthetic process	2.90E-02
144	GO:0009789: positive regulation of abscisic acid-activated signaling pathway	2.90E-02
145	GO:0015979: photosynthesis	2.98E-02
146	GO:0010118: stomatal movement	3.06E-02
147	GO:0048653: anther development	3.06E-02
148	GO:0042631: cellular response to water deprivation	3.06E-02
149	GO:0080022: primary root development	3.06E-02
150	GO:0008033: tRNA processing	3.06E-02
151	GO:0000413: protein peptidyl-prolyl isomerization	3.06E-02
152	GO:0010087: phloem or xylem histogenesis	3.06E-02
153	GO:0030154: cell differentiation	3.19E-02
154	GO:0010305: leaf vascular tissue pattern formation	3.23E-02
155	GO:0010182: sugar mediated signaling pathway	3.23E-02
156	GO:0042752: regulation of circadian rhythm	3.40E-02
157	GO:0009646: response to absence of light	3.40E-02
158	GO:0048544: recognition of pollen	3.40E-02
159	GO:0048825: cotyledon development	3.57E-02
160	GO:0009058: biosynthetic process	3.74E-02
161	GO:0010583: response to cyclopentenone	3.93E-02
162	GO:0016032: viral process	3.93E-02
163	GO:0030163: protein catabolic process	4.11E-02
164	GO:0071281: cellular response to iron ion	4.11E-02
165	GO:0010090: trichome morphogenesis	4.11E-02
166	GO:0009790: embryo development	4.14E-02
167	GO:0006633: fatty acid biosynthetic process	4.45E-02
168	GO:0007267: cell-cell signaling	4.49E-02
169	GO:0009793: embryo development ending in seed dormancy	4.65E-02
170	GO:0051607: defense response to virus	4.68E-02
171	GO:0007623: circadian rhythm	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
2	GO:0005201: extracellular matrix structural constituent	0.00E+00
3	GO:0004076: biotin synthase activity	0.00E+00
4	GO:0047450: crotonoyl-[acyl-carrier-protein] hydratase activity	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0010303: limit dextrinase activity	0.00E+00
7	GO:0071633: dihydroceramidase activity	0.00E+00
8	GO:0050518: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity	0.00E+00
9	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
10	GO:0051060: pullulanase activity	0.00E+00
11	GO:0047661: amino-acid racemase activity	0.00E+00
12	GO:0005504: fatty acid binding	2.16E-05
13	GO:0045430: chalcone isomerase activity	8.40E-05
14	GO:0042286: glutamate-1-semialdehyde 2,1-aminomutase activity	3.70E-04
15	GO:0000170: sphingosine hydroxylase activity	3.70E-04
16	GO:0050139: nicotinate-N-glucosyltransferase activity	3.70E-04
17	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	3.70E-04
18	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	3.70E-04
19	GO:0004425: indole-3-glycerol-phosphate synthase activity	3.70E-04
20	GO:0008184: glycogen phosphorylase activity	3.70E-04
21	GO:0050308: sugar-phosphatase activity	3.70E-04
22	GO:0004134: 4-alpha-glucanotransferase activity	3.70E-04
23	GO:0004645: phosphorylase activity	3.70E-04
24	GO:0052381: tRNA dimethylallyltransferase activity	3.70E-04
25	GO:0009374: biotin binding	3.70E-04
26	GO:0010313: phytochrome binding	3.70E-04
27	GO:0019203: carbohydrate phosphatase activity	3.70E-04
28	GO:0005080: protein kinase C binding	3.70E-04
29	GO:0004832: valine-tRNA ligase activity	3.70E-04
30	GO:0001085: RNA polymerase II transcription factor binding	4.41E-04
31	GO:0003852: 2-isopropylmalate synthase activity	8.05E-04
32	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	8.05E-04
33	GO:0042284: sphingolipid delta-4 desaturase activity	8.05E-04
34	GO:0008493: tetracycline transporter activity	8.05E-04
35	GO:0016630: protochlorophyllide reductase activity	8.05E-04
36	GO:0019171: 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	8.05E-04
37	GO:0004614: phosphoglucomutase activity	8.05E-04
38	GO:0005262: calcium channel activity	1.24E-03
39	GO:0015462: ATPase-coupled protein transmembrane transporter activity	1.30E-03
40	GO:0045174: glutathione dehydrogenase (ascorbate) activity	1.30E-03
41	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	1.54E-03
42	GO:0001872: (1->3)-beta-D-glucan binding	1.88E-03
43	GO:0016851: magnesium chelatase activity	1.88E-03
44	GO:0043023: ribosomal large subunit binding	1.88E-03
45	GO:0005528: FK506 binding	1.93E-03
46	GO:0019199: transmembrane receptor protein kinase activity	2.52E-03
47	GO:0016279: protein-lysine N-methyltransferase activity	2.52E-03
48	GO:0003755: peptidyl-prolyl cis-trans isomerase activity	2.92E-03
49	GO:0003989: acetyl-CoA carboxylase activity	3.23E-03
50	GO:2001070: starch binding	3.99E-03
51	GO:1990714: hydroxyproline O-galactosyltransferase activity	3.99E-03
52	GO:0004556: alpha-amylase activity	3.99E-03
53	GO:0051920: peroxiredoxin activity	4.81E-03
54	GO:0004723: calcium-dependent protein serine/threonine phosphatase activity	4.81E-03
55	GO:0000156: phosphorelay response regulator activity	5.40E-03
56	GO:0016209: antioxidant activity	6.61E-03
57	GO:0016847: 1-aminocyclopropane-1-carboxylate synthase activity	6.61E-03
58	GO:0008173: RNA methyltransferase activity	7.58E-03
59	GO:0102483: scopolin beta-glucosidase activity	8.10E-03
60	GO:0004674: protein serine/threonine kinase activity	8.26E-03
61	GO:0030170: pyridoxal phosphate binding	8.38E-03
62	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	8.60E-03
63	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	8.65E-03
64	GO:0044183: protein binding involved in protein folding	1.19E-02
65	GO:0047372: acylglycerol lipase activity	1.19E-02
66	GO:0008422: beta-glucosidase activity	1.25E-02
67	GO:0009055: electron carrier activity	1.28E-02
68	GO:0003725: double-stranded RNA binding	1.44E-02
69	GO:0015266: protein channel activity	1.44E-02
70	GO:0005507: copper ion binding	1.52E-02
71	GO:0008266: poly(U) RNA binding	1.57E-02
72	GO:0043621: protein self-association	1.60E-02
73	GO:0004190: aspartic-type endopeptidase activity	1.70E-02
74	GO:0008146: sulfotransferase activity	1.70E-02
75	GO:0003712: transcription cofactor activity	1.70E-02
76	GO:0051536: iron-sulfur cluster binding	1.98E-02
77	GO:0003682: chromatin binding	2.07E-02
78	GO:0043424: protein histidine kinase binding	2.12E-02
79	GO:0015171: amino acid transmembrane transporter activity	2.21E-02
80	GO:0004176: ATP-dependent peptidase activity	2.27E-02
81	GO:0033612: receptor serine/threonine kinase binding	2.27E-02
82	GO:0008810: cellulase activity	2.58E-02
83	GO:0005515: protein binding	2.64E-02
84	GO:0003723: RNA binding	2.73E-02
85	GO:0003727: single-stranded RNA binding	2.73E-02
86	GO:0052689: carboxylic ester hydrolase activity	2.86E-02
87	GO:0004812: aminoacyl-tRNA ligase activity	2.90E-02
88	GO:0005524: ATP binding	3.17E-02
89	GO:0003824: catalytic activity	3.23E-02
90	GO:0004871: signal transducer activity	3.35E-02
91	GO:0042803: protein homodimerization activity	3.35E-02
92	GO:0019901: protein kinase binding	3.57E-02
93	GO:0004872: receptor activity	3.57E-02
94	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.64E-02
95	GO:0004518: nuclease activity	3.93E-02
96	GO:0016759: cellulose synthase activity	4.30E-02
97	GO:0046983: protein dimerization activity	4.45E-02
98	GO:0008483: transaminase activity	4.49E-02
99	GO:0008237: metallopeptidase activity	4.49E-02
100	GO:0005200: structural constituent of cytoskeleton	4.49E-02
101	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	4.55E-02
102	GO:0016597: amino acid binding	4.68E-02

Rank	GO Term	Adjusted P value
1	GO:0009570: chloroplast stroma	4.38E-10
2	GO:0009534: chloroplast thylakoid	1.88E-09
3	GO:0009941: chloroplast envelope	4.62E-09
4	GO:0009507: chloroplast	1.30E-08
5	GO:0046658: anchored component of plasma membrane	7.94E-04
6	GO:0000427: plastid-encoded plastid RNA polymerase complex	8.05E-04
7	GO:0005667: transcription factor complex	1.06E-03
8	GO:0019897: extrinsic component of plasma membrane	1.30E-03
9	GO:0010007: magnesium chelatase complex	1.30E-03
10	GO:0030139: endocytic vesicle	1.30E-03
11	GO:0009317: acetyl-CoA carboxylase complex	1.30E-03
12	GO:0009543: chloroplast thylakoid lumen	1.43E-03
13	GO:0005886: plasma membrane	1.58E-03
14	GO:0031225: anchored component of membrane	1.80E-03
15	GO:0032585: multivesicular body membrane	1.88E-03
16	GO:0009579: thylakoid	3.43E-03
17	GO:0009536: plastid	4.98E-03
18	GO:0009533: chloroplast stromal thylakoid	5.68E-03
19	GO:0009986: cell surface	5.68E-03
20	GO:0010319: stromule	6.11E-03
21	GO:0031969: chloroplast membrane	6.35E-03
22	GO:0009501: amyloplast	6.61E-03
23	GO:0090404: pollen tube tip	1.19E-02
24	GO:0031977: thylakoid lumen	1.36E-02
25	GO:0009508: plastid chromosome	1.44E-02
26	GO:0043234: protein complex	1.84E-02
27	GO:0009654: photosystem II oxygen evolving complex	2.12E-02
28	GO:0015629: actin cytoskeleton	2.58E-02
29	GO:0005744: mitochondrial inner membrane presequence translocase complex	2.73E-02
30	GO:0019898: extrinsic component of membrane	3.57E-02
31	GO:0009295: nucleoid	4.49E-02
32	GO:0030529: intracellular ribonucleoprotein complex	4.87E-02