co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G19780

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:1905255: regulation of RNA binding transcription factor activity	0.00E+00
2	GO:0080127: fruit septum development	0.00E+00
3	GO:0031222: arabinan catabolic process	0.00E+00
4	GO:0061157: mRNA destabilization	0.00E+00
5	GO:0043392: negative regulation of DNA binding	0.00E+00
6	GO:1900033: negative regulation of trichome patterning	1.28E-05
7	GO:0046620: regulation of organ growth	3.37E-05
8	GO:0009733: response to auxin	6.42E-05
9	GO:0048629: trichome patterning	1.57E-04
10	GO:0040008: regulation of growth	2.63E-04
11	GO:0030488: tRNA methylation	4.50E-04
12	GO:0046520: sphingoid biosynthetic process	5.40E-04
13	GO:0006285: base-excision repair, AP site formation	5.40E-04
14	GO:0010480: microsporocyte differentiation	5.40E-04
15	GO:0043686: co-translational protein modification	5.40E-04
16	GO:0015904: tetracycline transport	5.40E-04
17	GO:0000025: maltose catabolic process	5.40E-04
18	GO:0019294: keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	5.40E-04
19	GO:0009686: gibberellin biosynthetic process	6.02E-04
20	GO:0009741: response to brassinosteroid	9.01E-04
21	GO:0000373: Group II intron splicing	1.04E-03
22	GO:0006741: NADP biosynthetic process	1.16E-03
23	GO:0009786: regulation of asymmetric cell division	1.16E-03
24	GO:0031648: protein destabilization	1.16E-03
25	GO:2000123: positive regulation of stomatal complex development	1.16E-03
26	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	1.18E-03
27	GO:0032502: developmental process	1.28E-03
28	GO:0009641: shade avoidance	1.44E-03
29	GO:0045892: negative regulation of transcription, DNA-templated	1.63E-03
30	GO:0006296: nucleotide-excision repair, DNA incision, 5'-to lesion	1.91E-03
31	GO:0071398: cellular response to fatty acid	1.91E-03
32	GO:0048575: short-day photoperiodism, flowering	1.91E-03
33	GO:0019674: NAD metabolic process	1.91E-03
34	GO:0045910: negative regulation of DNA recombination	1.91E-03
35	GO:0090506: axillary shoot meristem initiation	1.91E-03
36	GO:0033591: response to L-ascorbic acid	1.91E-03
37	GO:1990019: protein storage vacuole organization	2.76E-03
38	GO:0010306: rhamnogalacturonan II biosynthetic process	2.76E-03
39	GO:0010321: regulation of vegetative phase change	2.76E-03
40	GO:0019363: pyridine nucleotide biosynthetic process	2.76E-03
41	GO:0010371: regulation of gibberellin biosynthetic process	2.76E-03
42	GO:0051513: regulation of monopolar cell growth	2.76E-03
43	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	2.76E-03
44	GO:2000038: regulation of stomatal complex development	3.72E-03
45	GO:0009755: hormone-mediated signaling pathway	3.72E-03
46	GO:0042274: ribosomal small subunit biogenesis	3.72E-03
47	GO:0009765: photosynthesis, light harvesting	3.72E-03
48	GO:0010431: seed maturation	4.13E-03
49	GO:0009734: auxin-activated signaling pathway	4.72E-03
50	GO:0009696: salicylic acid metabolic process	4.78E-03
51	GO:0016120: carotene biosynthetic process	4.78E-03
52	GO:0016131: brassinosteroid metabolic process	4.78E-03
53	GO:0045487: gibberellin catabolic process	4.78E-03
54	GO:0048497: maintenance of floral organ identity	4.78E-03
55	GO:0031365: N-terminal protein amino acid modification	4.78E-03
56	GO:0009107: lipoate biosynthetic process	4.78E-03
57	GO:0016123: xanthophyll biosynthetic process	4.78E-03
58	GO:0010438: cellular response to sulfur starvation	4.78E-03
59	GO:0010375: stomatal complex patterning	4.78E-03
60	GO:0009926: auxin polar transport	4.95E-03
61	GO:0006284: base-excision repair	5.37E-03
62	GO:0009913: epidermal cell differentiation	5.92E-03
63	GO:0018258: protein O-linked glycosylation via hydroxyproline	5.92E-03
64	GO:1902456: regulation of stomatal opening	5.92E-03
65	GO:0003006: developmental process involved in reproduction	5.92E-03
66	GO:0010405: arabinogalactan protein metabolic process	5.92E-03
67	GO:0042549: photosystem II stabilization	5.92E-03
68	GO:0009959: negative gravitropism	5.92E-03
69	GO:0010358: leaf shaping	5.92E-03
70	GO:0016554: cytidine to uridine editing	5.92E-03
71	GO:0009739: response to gibberellin	6.65E-03
72	GO:0010268: brassinosteroid homeostasis	6.79E-03
73	GO:0031930: mitochondria-nucleus signaling pathway	7.16E-03
74	GO:0009082: branched-chain amino acid biosynthetic process	7.16E-03
75	GO:0048509: regulation of meristem development	7.16E-03
76	GO:0009099: valine biosynthetic process	7.16E-03
77	GO:0071554: cell wall organization or biogenesis	8.41E-03
78	GO:0010161: red light signaling pathway	8.47E-03
79	GO:0048437: floral organ development	8.47E-03
80	GO:0009819: drought recovery	9.87E-03
81	GO:0042255: ribosome assembly	9.87E-03
82	GO:0006402: mRNA catabolic process	9.87E-03
83	GO:0006353: DNA-templated transcription, termination	9.87E-03
84	GO:0010439: regulation of glucosinolate biosynthetic process	9.87E-03
85	GO:0009690: cytokinin metabolic process	9.87E-03
86	GO:0009704: de-etiolation	9.87E-03
87	GO:2000070: regulation of response to water deprivation	9.87E-03
88	GO:0000105: histidine biosynthetic process	9.87E-03
89	GO:0006351: transcription, DNA-templated	1.08E-02
90	GO:0010497: plasmodesmata-mediated intercellular transport	1.13E-02
91	GO:0009097: isoleucine biosynthetic process	1.13E-02
92	GO:0010100: negative regulation of photomorphogenesis	1.13E-02
93	GO:0010099: regulation of photomorphogenesis	1.13E-02
94	GO:0048507: meristem development	1.29E-02
95	GO:0051865: protein autoubiquitination	1.29E-02
96	GO:0006783: heme biosynthetic process	1.29E-02
97	GO:0009056: catabolic process	1.29E-02
98	GO:0000902: cell morphogenesis	1.29E-02
99	GO:0015995: chlorophyll biosynthetic process	1.44E-02
100	GO:0048573: photoperiodism, flowering	1.44E-02
101	GO:0006779: porphyrin-containing compound biosynthetic process	1.45E-02
102	GO:0009098: leucine biosynthetic process	1.45E-02
103	GO:1900865: chloroplast RNA modification	1.45E-02
104	GO:0006782: protoporphyrinogen IX biosynthetic process	1.62E-02
105	GO:0009870: defense response signaling pathway, resistance gene-dependent	1.62E-02
106	GO:0048829: root cap development	1.62E-02
107	GO:0006298: mismatch repair	1.62E-02
108	GO:0016441: posttranscriptional gene silencing	1.62E-02
109	GO:0009073: aromatic amino acid family biosynthetic process	1.80E-02
110	GO:0009750: response to fructose	1.80E-02
111	GO:0048229: gametophyte development	1.80E-02
112	GO:0009682: induced systemic resistance	1.80E-02
113	GO:0010582: floral meristem determinacy	1.98E-02
114	GO:0010105: negative regulation of ethylene-activated signaling pathway	1.98E-02
115	GO:0012501: programmed cell death	1.98E-02
116	GO:0005983: starch catabolic process	1.98E-02
117	GO:0009867: jasmonic acid mediated signaling pathway	2.03E-02
118	GO:0010102: lateral root morphogenesis	2.17E-02
119	GO:0009691: cytokinin biosynthetic process	2.17E-02
120	GO:0010628: positive regulation of gene expression	2.17E-02
121	GO:0006006: glucose metabolic process	2.17E-02
122	GO:2000028: regulation of photoperiodism, flowering	2.17E-02
123	GO:0010075: regulation of meristem growth	2.17E-02
124	GO:0009725: response to hormone	2.17E-02
125	GO:0009767: photosynthetic electron transport chain	2.17E-02
126	GO:0010588: cotyledon vascular tissue pattern formation	2.17E-02
127	GO:0009416: response to light stimulus	2.22E-02
128	GO:0010207: photosystem II assembly	2.36E-02
129	GO:0010223: secondary shoot formation	2.36E-02
130	GO:0009934: regulation of meristem structural organization	2.36E-02
131	GO:0006302: double-strand break repair	2.36E-02
132	GO:0048467: gynoecium development	2.36E-02
133	GO:0006631: fatty acid metabolic process	2.42E-02
134	GO:0090351: seedling development	2.56E-02
135	GO:0016042: lipid catabolic process	2.59E-02
136	GO:0009640: photomorphogenesis	2.62E-02
137	GO:0009744: response to sucrose	2.62E-02
138	GO:0042546: cell wall biogenesis	2.73E-02
139	GO:0006863: purine nucleobase transport	2.77E-02
140	GO:0000162: tryptophan biosynthetic process	2.77E-02
141	GO:0010187: negative regulation of seed germination	2.98E-02
142	GO:0080147: root hair cell development	2.98E-02
143	GO:0005992: trehalose biosynthetic process	2.98E-02
144	GO:0006468: protein phosphorylation	3.12E-02
145	GO:0051321: meiotic cell cycle	3.42E-02
146	GO:0016114: terpenoid biosynthetic process	3.42E-02
147	GO:0048511: rhythmic process	3.42E-02
148	GO:0048278: vesicle docking	3.42E-02
149	GO:2000022: regulation of jasmonic acid mediated signaling pathway	3.65E-02
150	GO:0010082: regulation of root meristem growth	3.88E-02
151	GO:0001944: vasculature development	3.88E-02
152	GO:0009625: response to insect	3.88E-02
153	GO:0009693: ethylene biosynthetic process	3.88E-02
154	GO:0071215: cellular response to abscisic acid stimulus	3.88E-02
155	GO:0006357: regulation of transcription from RNA polymerase II promoter	4.07E-02
156	GO:0045492: xylan biosynthetic process	4.12E-02
157	GO:0048367: shoot system development	4.30E-02
158	GO:0016117: carotenoid biosynthetic process	4.36E-02
159	GO:0080022: primary root development	4.61E-02
160	GO:0008033: tRNA processing	4.61E-02
161	GO:0010501: RNA secondary structure unwinding	4.61E-02
162	GO:0010087: phloem or xylem histogenesis	4.61E-02
163	GO:0010118: stomatal movement	4.61E-02
164	GO:0048653: anther development	4.61E-02
165	GO:0009740: gibberellic acid mediated signaling pathway	4.72E-02
166	GO:0010305: leaf vascular tissue pattern formation	4.86E-02
167	GO:0010182: sugar mediated signaling pathway	4.86E-02
168	GO:0048868: pollen tube development	4.86E-02
169	GO:0009960: endosperm development	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0045435: lycopene epsilon cyclase activity	0.00E+00
2	GO:0071633: dihydroceramidase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0080030: methyl indole-3-acetate esterase activity	3.38E-04
5	GO:0042586: peptide deformylase activity	5.40E-04
6	GO:0052381: tRNA dimethylallyltransferase activity	5.40E-04
7	GO:0010313: phytochrome binding	5.40E-04
8	GO:0004134: 4-alpha-glucanotransferase activity	5.40E-04
9	GO:0008395: steroid hydroxylase activity	5.40E-04
10	GO:0000703: oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity	5.40E-04
11	GO:0042736: NADH kinase activity	5.40E-04
12	GO:0010012: steroid 22-alpha hydroxylase activity	5.40E-04
13	GO:0000170: sphingosine hydroxylase activity	5.40E-04
14	GO:0050139: nicotinate-N-glucosyltransferase activity	5.40E-04
15	GO:0004729: oxygen-dependent protoporphyrinogen oxidase activity	5.40E-04
16	GO:0004801: sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity	5.40E-04
17	GO:0008676: 3-deoxy-8-phosphooctulonate synthase activity	5.40E-04
18	GO:0008493: tetracycline transporter activity	1.16E-03
19	GO:0017118: lipoyltransferase activity	1.16E-03
20	GO:0045543: gibberellin 2-beta-dioxygenase activity	1.16E-03
21	GO:0010296: prenylcysteine methylesterase activity	1.16E-03
22	GO:0016415: octanoyltransferase activity	1.16E-03
23	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	1.16E-03
24	GO:0042284: sphingolipid delta-4 desaturase activity	1.16E-03
25	GO:0003906: DNA-(apurinic or apyrimidinic site) lyase activity	1.91E-03
26	GO:0052656: L-isoleucine transaminase activity	2.76E-03
27	GO:0052654: L-leucine transaminase activity	2.76E-03
28	GO:0080031: methyl salicylate esterase activity	2.76E-03
29	GO:0045544: gibberellin 20-oxidase activity	2.76E-03
30	GO:0052655: L-valine transaminase activity	2.76E-03
31	GO:0001872: (1->3)-beta-D-glucan binding	2.76E-03
32	GO:0052634: C-19 gibberellin 2-beta-dioxygenase activity	2.76E-03
33	GO:0016788: hydrolase activity, acting on ester bonds	2.94E-03
34	GO:0016705: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	3.57E-03
35	GO:0019199: transmembrane receptor protein kinase activity	3.72E-03
36	GO:0046556: alpha-L-arabinofuranosidase activity	3.72E-03
37	GO:0019104: DNA N-glycosylase activity	3.72E-03
38	GO:0008574: ATP-dependent microtubule motor activity, plus-end-directed	3.72E-03
39	GO:0004084: branched-chain-amino-acid transaminase activity	3.72E-03
40	GO:0005345: purine nucleobase transmembrane transporter activity	3.75E-03
41	GO:0033612: receptor serine/threonine kinase binding	4.13E-03
42	GO:0070696: transmembrane receptor protein serine/threonine kinase binding	4.78E-03
43	GO:0008725: DNA-3-methyladenine glycosylase activity	4.78E-03
44	GO:0003727: single-stranded RNA binding	5.37E-03
45	GO:0004130: cytochrome-c peroxidase activity	5.92E-03
46	GO:0016688: L-ascorbate peroxidase activity	5.92E-03
47	GO:0030983: mismatched DNA binding	5.92E-03
48	GO:1990714: hydroxyproline O-galactosyltransferase activity	5.92E-03
49	GO:0004709: MAP kinase kinase kinase activity	5.92E-03
50	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	7.16E-03
51	GO:0016832: aldehyde-lyase activity	7.16E-03
52	GO:0003700: transcription factor activity, sequence-specific DNA binding	9.51E-03
53	GO:0004519: endonuclease activity	9.54E-03
54	GO:0005200: structural constituent of cytoskeleton	1.09E-02
55	GO:0003951: NAD+ kinase activity	1.13E-02
56	GO:0008173: RNA methyltransferase activity	1.13E-02
57	GO:0003724: RNA helicase activity	1.13E-02
58	GO:0016413: O-acetyltransferase activity	1.15E-02
59	GO:0009815: 1-aminocyclopropane-1-carboxylate oxidase activity	1.29E-02
60	GO:0004805: trehalose-phosphatase activity	1.62E-02
61	GO:0016301: kinase activity	1.63E-02
62	GO:0052689: carboxylic ester hydrolase activity	1.76E-02
63	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	1.79E-02
64	GO:0004674: protein serine/threonine kinase activity	1.80E-02
65	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	1.85E-02
66	GO:0003677: DNA binding	1.97E-02
67	GO:0001135: transcription factor activity, RNA polymerase II transcription factor recruiting	1.98E-02
68	GO:0042803: protein homodimerization activity	2.12E-02
69	GO:0004871: signal transducer activity	2.12E-02
70	GO:0000981: RNA polymerase II transcription factor activity, sequence-specific DNA binding	2.32E-02
71	GO:0004672: protein kinase activity	2.47E-02
72	GO:0008146: sulfotransferase activity	2.56E-02
73	GO:0003712: transcription cofactor activity	2.56E-02
74	GO:0004190: aspartic-type endopeptidase activity	2.56E-02
75	GO:0043621: protein self-association	2.84E-02
76	GO:0051536: iron-sulfur cluster binding	2.98E-02
77	GO:0031418: L-ascorbic acid binding	2.98E-02
78	GO:0009055: electron carrier activity	3.00E-02
79	GO:0003964: RNA-directed DNA polymerase activity	3.42E-02
80	GO:0008408: 3'-5' exonuclease activity	3.42E-02
81	GO:0010333: terpene synthase activity	3.42E-02
82	GO:0016298: lipase activity	3.66E-02
83	GO:0003777: microtubule motor activity	3.91E-02
84	GO:0016874: ligase activity	4.72E-02
85	GO:0005199: structural constituent of cell wall	4.86E-02
86	GO:0016538: cyclin-dependent protein serine/threonine kinase regulator activity	4.86E-02
87	GO:0001085: RNA polymerase II transcription factor binding	4.86E-02

Rank	GO Term	Adjusted P value
1	GO:0009654: photosystem II oxygen evolving complex	4.21E-04
2	GO:0000791: euchromatin	5.40E-04
3	GO:0010494: cytoplasmic stress granule	1.04E-03
4	GO:0019898: extrinsic component of membrane	1.08E-03
5	GO:0030870: Mre11 complex	1.16E-03
6	GO:0030139: endocytic vesicle	1.91E-03
7	GO:0032585: multivesicular body membrane	2.76E-03
8	GO:0009544: chloroplast ATP synthase complex	3.72E-03
9	GO:0000795: synaptonemal complex	4.78E-03
10	GO:0009986: cell surface	8.47E-03
11	GO:0009501: amyloplast	9.87E-03
12	GO:0042644: chloroplast nucleoid	1.29E-02
13	GO:0005578: proteinaceous extracellular matrix	2.17E-02
14	GO:0030095: chloroplast photosystem II	2.36E-02
15	GO:0005875: microtubule associated complex	2.77E-02
16	GO:0009532: plastid stroma	3.42E-02
17	GO:0015629: actin cytoskeleton	3.88E-02
18	GO:0005871: kinesin complex	4.36E-02
19	GO:0009507: chloroplast	4.37E-02
20	GO:0012505: endomembrane system	4.86E-02