co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G19400

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:0046838: phosphorylated carbohydrate dephosphorylation	0.00E+00
2	GO:0042407: cristae formation	0.00E+00
3	GO:0015805: S-adenosyl-L-methionine transport	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0042352: GDP-L-fucose salvage	0.00E+00
6	GO:0061157: mRNA destabilization	0.00E+00
7	GO:0043392: negative regulation of DNA binding	0.00E+00
8	GO:0005983: starch catabolic process	2.81E-05
9	GO:0048497: maintenance of floral organ identity	6.67E-05
10	GO:0042793: transcription from plastid promoter	9.77E-05
11	GO:0005980: glycogen catabolic process	2.46E-04
12	GO:0030198: extracellular matrix organization	2.46E-04
13	GO:0006438: valyl-tRNA aminoacylation	2.46E-04
14	GO:0046520: sphingoid biosynthetic process	2.46E-04
15	GO:0010480: microsporocyte differentiation	2.46E-04
16	GO:0006426: glycyl-tRNA aminoacylation	2.46E-04
17	GO:0015904: tetracycline transport	2.46E-04
18	GO:0000025: maltose catabolic process	2.46E-04
19	GO:0006949: syncytium formation	4.67E-04
20	GO:0006423: cysteinyl-tRNA aminoacylation	5.44E-04
21	GO:0018026: peptidyl-lysine monomethylation	5.44E-04
22	GO:0071497: cellular response to freezing	5.44E-04
23	GO:0009786: regulation of asymmetric cell division	5.44E-04
24	GO:0031648: protein destabilization	5.44E-04
25	GO:0006568: tryptophan metabolic process	5.44E-04
26	GO:2000123: positive regulation of stomatal complex development	5.44E-04
27	GO:0007169: transmembrane receptor protein tyrosine kinase signaling pathway	5.59E-04
28	GO:0010102: lateral root morphogenesis	7.00E-04
29	GO:0045892: negative regulation of transcription, DNA-templated	7.44E-04
30	GO:0009640: photomorphogenesis	1.12E-03
31	GO:0019953: sexual reproduction	1.19E-03
32	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.26E-03
33	GO:0046739: transport of virus in multicellular host	1.26E-03
34	GO:0009102: biotin biosynthetic process	1.26E-03
35	GO:2000038: regulation of stomatal complex development	1.68E-03
36	GO:0006808: regulation of nitrogen utilization	1.68E-03
37	GO:1901141: regulation of lignin biosynthetic process	1.68E-03
38	GO:0042274: ribosomal small subunit biogenesis	1.68E-03
39	GO:0009793: embryo development ending in seed dormancy	1.77E-03
40	GO:0009741: response to brassinosteroid	2.12E-03
41	GO:0010375: stomatal complex patterning	2.15E-03
42	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.65E-03
43	GO:0009913: epidermal cell differentiation	2.65E-03
44	GO:1902456: regulation of stomatal opening	2.65E-03
45	GO:0033365: protein localization to organelle	2.65E-03
46	GO:0010405: arabinogalactan protein metabolic process	2.65E-03
47	GO:0009828: plant-type cell wall loosening	3.16E-03
48	GO:0048509: regulation of meristem development	3.18E-03
49	GO:0030488: tRNA methylation	3.18E-03
50	GO:0045995: regulation of embryonic development	3.75E-03
51	GO:0048437: floral organ development	3.75E-03
52	GO:0010027: thylakoid membrane organization	3.76E-03
53	GO:0001522: pseudouridine synthesis	4.35E-03
54	GO:0009704: de-etiolation	4.35E-03
55	GO:0000105: histidine biosynthetic process	4.35E-03
56	GO:0010497: plasmodesmata-mediated intercellular transport	4.98E-03
57	GO:0006526: arginine biosynthetic process	4.98E-03
58	GO:0006468: protein phosphorylation	5.32E-03
59	GO:0051865: protein autoubiquitination	5.65E-03
60	GO:0031425: chloroplast RNA processing	6.33E-03
61	GO:0005982: starch metabolic process	6.33E-03
62	GO:0043067: regulation of programmed cell death	6.33E-03
63	GO:0009098: leucine biosynthetic process	6.33E-03
64	GO:0048829: root cap development	7.06E-03
65	GO:0009641: shade avoidance	7.06E-03
66	GO:0006631: fatty acid metabolic process	7.39E-03
67	GO:0009073: aromatic amino acid family biosynthetic process	7.80E-03
68	GO:0048229: gametophyte development	7.80E-03
69	GO:0009826: unidimensional cell growth	8.50E-03
70	GO:0012501: programmed cell death	8.58E-03
71	GO:0009691: cytokinin biosynthetic process	9.38E-03
72	GO:0010628: positive regulation of gene expression	9.38E-03
73	GO:0006006: glucose metabolic process	9.38E-03
74	GO:0010075: regulation of meristem growth	9.38E-03
75	GO:0010588: cotyledon vascular tissue pattern formation	9.38E-03
76	GO:0009664: plant-type cell wall organization	1.01E-02
77	GO:0010020: chloroplast fission	1.02E-02
78	GO:0007034: vacuolar transport	1.02E-02
79	GO:0009266: response to temperature stimulus	1.02E-02
80	GO:0009934: regulation of meristem structural organization	1.02E-02
81	GO:0090351: seedling development	1.11E-02
82	GO:0000162: tryptophan biosynthetic process	1.20E-02
83	GO:0006418: tRNA aminoacylation for protein translation	1.38E-02
84	GO:0048278: vesicle docking	1.47E-02
85	GO:0048511: rhythmic process	1.47E-02
86	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.57E-02
87	GO:0009742: brassinosteroid mediated signaling pathway	1.64E-02
88	GO:0010091: trichome branching	1.77E-02
89	GO:0016042: lipid catabolic process	1.86E-02
90	GO:0080022: primary root development	1.99E-02
91	GO:0008033: tRNA processing	1.99E-02
92	GO:0010087: phloem or xylem histogenesis	1.99E-02
93	GO:0010118: stomatal movement	1.99E-02
94	GO:0048653: anther development	1.99E-02
95	GO:0009058: biosynthetic process	2.04E-02
96	GO:0010305: leaf vascular tissue pattern formation	2.09E-02
97	GO:0006520: cellular amino acid metabolic process	2.09E-02
98	GO:0010197: polar nucleus fusion	2.09E-02
99	GO:0061025: membrane fusion	2.21E-02
100	GO:0042752: regulation of circadian rhythm	2.21E-02
101	GO:0048825: cotyledon development	2.32E-02
102	GO:0048510: regulation of timing of transition from vegetative to reproductive phase	2.43E-02
103	GO:0010583: response to cyclopentenone	2.55E-02
104	GO:0032502: developmental process	2.55E-02
105	GO:0040008: regulation of growth	2.55E-02
106	GO:1901657: glycosyl compound metabolic process	2.67E-02
107	GO:0030163: protein catabolic process	2.67E-02
108	GO:0009451: RNA modification	2.74E-02
109	GO:0009567: double fertilization forming a zygote and endosperm	2.79E-02
110	GO:0007267: cell-cell signaling	2.91E-02
111	GO:0009734: auxin-activated signaling pathway	2.96E-02
112	GO:0051607: defense response to virus	3.04E-02
113	GO:0007166: cell surface receptor signaling pathway	3.06E-02
114	GO:0006906: vesicle fusion	3.42E-02
115	GO:0048573: photoperiodism, flowering	3.55E-02
116	GO:0009733: response to auxin	3.69E-02
117	GO:0016311: dephosphorylation	3.69E-02
118	GO:0010311: lateral root formation	3.96E-02
119	GO:0000160: phosphorelay signal transduction system	3.96E-02
120	GO:0009658: chloroplast organization	4.13E-02
121	GO:0009631: cold acclimation	4.24E-02
122	GO:0006865: amino acid transport	4.38E-02
123	GO:0006839: mitochondrial transport	4.96E-02
124	GO:0030001: metal ion transport	4.96E-02
125	GO:0006351: transcription, DNA-templated	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0003949: 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase activity	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0047341: fucose-1-phosphate guanylyltransferase activity	0.00E+00
6	GO:0004076: biotin synthase activity	0.00E+00
7	GO:0051752: phosphoglucan, water dikinase activity	0.00E+00
8	GO:0050201: fucokinase activity	0.00E+00
9	GO:2001070: starch binding	9.77E-05
10	GO:0050308: sugar-phosphatase activity	2.46E-04
11	GO:0052381: tRNA dimethylallyltransferase activity	2.46E-04
12	GO:0004134: 4-alpha-glucanotransferase activity	2.46E-04
13	GO:0004645: phosphorylase activity	2.46E-04
14	GO:0009374: biotin binding	2.46E-04
15	GO:0019203: carbohydrate phosphatase activity	2.46E-04
16	GO:0004832: valine-tRNA ligase activity	2.46E-04
17	GO:0004820: glycine-tRNA ligase activity	2.46E-04
18	GO:0003942: N-acetyl-gamma-glutamyl-phosphate reductase activity	2.46E-04
19	GO:0000170: sphingosine hydroxylase activity	2.46E-04
20	GO:0050139: nicotinate-N-glucosyltransferase activity	2.46E-04
21	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.46E-04
22	GO:0008184: glycogen phosphorylase activity	2.46E-04
23	GO:0042284: sphingolipid delta-4 desaturase activity	5.44E-04
24	GO:0008493: tetracycline transporter activity	5.44E-04
25	GO:0019200: carbohydrate kinase activity	5.44E-04
26	GO:0003852: 2-isopropylmalate synthase activity	5.44E-04
27	GO:0004817: cysteine-tRNA ligase activity	5.44E-04
28	GO:0000095: S-adenosyl-L-methionine transmembrane transporter activity	5.44E-04
29	GO:0042803: protein homodimerization activity	7.86E-04
30	GO:0016620: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	8.83E-04
31	GO:0070330: aromatase activity	8.83E-04
32	GO:0017150: tRNA dihydrouridine synthase activity	8.83E-04
33	GO:0004176: ATP-dependent peptidase activity	1.30E-03
34	GO:0004674: protein serine/threonine kinase activity	1.55E-03
35	GO:0019199: transmembrane receptor protein kinase activity	1.68E-03
36	GO:0046556: alpha-L-arabinofuranosidase activity	1.68E-03
37	GO:0004335: galactokinase activity	1.68E-03
38	GO:0016279: protein-lysine N-methyltransferase activity	1.68E-03
39	GO:0001085: RNA polymerase II transcription factor binding	2.12E-03
40	GO:0018685: alkane 1-monooxygenase activity	2.15E-03
41	GO:0003989: acetyl-CoA carboxylase activity	2.15E-03
42	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.65E-03
43	GO:0016832: aldehyde-lyase activity	3.18E-03
44	GO:0008237: metallopeptidase activity	3.35E-03
45	GO:0005524: ATP binding	3.68E-03
46	GO:0008173: RNA methyltransferase activity	4.98E-03
47	GO:0008138: protein tyrosine/serine/threonine phosphatase activity	5.65E-03
48	GO:0001228: transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding	5.67E-03
49	GO:0043621: protein self-association	8.67E-03
50	GO:0016887: ATPase activity	8.88E-03
51	GO:0015266: protein channel activity	9.38E-03
52	GO:0009982: pseudouridine synthase activity	9.38E-03
53	GO:0003712: transcription cofactor activity	1.11E-02
54	GO:0004190: aspartic-type endopeptidase activity	1.11E-02
55	GO:0052689: carboxylic ester hydrolase activity	1.33E-02
56	GO:0033612: receptor serine/threonine kinase binding	1.47E-02
57	GO:0003964: RNA-directed DNA polymerase activity	1.47E-02
58	GO:0003727: single-stranded RNA binding	1.77E-02
59	GO:0004812: aminoacyl-tRNA ligase activity	1.88E-02
60	GO:0004519: endonuclease activity	2.14E-02
61	GO:0000977: RNA polymerase II regulatory region sequence-specific DNA binding	2.21E-02
62	GO:0019901: protein kinase binding	2.32E-02
63	GO:0004675: transmembrane receptor protein serine/threonine kinase activity	2.49E-02
64	GO:0004518: nuclease activity	2.55E-02
65	GO:0000156: phosphorelay response regulator activity	2.67E-02
66	GO:0051015: actin filament binding	2.67E-02
67	GO:0008289: lipid binding	2.91E-02
68	GO:0005200: structural constituent of cytoskeleton	2.91E-02
69	GO:0003723: RNA binding	2.96E-02
70	GO:0102483: scopolin beta-glucosidase activity	3.55E-02
71	GO:0003824: catalytic activity	3.58E-02
72	GO:0015450: P-P-bond-hydrolysis-driven protein transmembrane transporter activity	3.82E-02
73	GO:0016301: kinase activity	3.95E-02
74	GO:0008168: methyltransferase activity	3.98E-02
75	GO:0004222: metalloendopeptidase activity	4.10E-02
76	GO:0016788: hydrolase activity, acting on ester bonds	4.21E-02
77	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	4.24E-02
78	GO:0003682: chromatin binding	4.36E-02
79	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.52E-02
80	GO:0003993: acid phosphatase activity	4.66E-02
81	GO:0050660: flavin adenine dinucleotide binding	4.76E-02
82	GO:0008422: beta-glucosidase activity	4.81E-02
83	GO:0000149: SNARE binding	4.81E-02
84	GO:0042393: histone binding	4.96E-02
85	GO:0051539: 4 iron, 4 sulfur cluster binding	4.96E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.53E-05
2	GO:0009941: chloroplast envelope	4.98E-04
3	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.44E-04
4	GO:0009508: plastid chromosome	7.00E-04
5	GO:0030139: endocytic vesicle	8.83E-04
6	GO:0009317: acetyl-CoA carboxylase complex	8.83E-04
7	GO:0032585: multivesicular body membrane	1.26E-03
8	GO:0009570: chloroplast stroma	1.33E-03
9	GO:0000815: ESCRT III complex	3.18E-03
10	GO:0009295: nucleoid	3.35E-03
11	GO:0009986: cell surface	3.75E-03
12	GO:0009534: chloroplast thylakoid	3.97E-03
13	GO:0005667: transcription factor complex	4.20E-03
14	GO:0009501: amyloplast	4.35E-03
15	GO:0005884: actin filament	7.80E-03
16	GO:0005578: proteinaceous extracellular matrix	9.38E-03
17	GO:0009536: plastid	1.39E-02
18	GO:0015629: actin cytoskeleton	1.67E-02
19	GO:0005744: mitochondrial inner membrane presequence translocase complex	1.77E-02
20	GO:0046658: anchored component of plasma membrane	3.54E-02
21	GO:0005886: plasma membrane	3.76E-02