co-expression network

GO Enrichment Analysis of Co-expressed Genes with

AT2G18260

GO-BP

GO-MF

GO-CC

Rank	GO Term	Adjusted P value
1	GO:2000042: negative regulation of double-strand break repair via homologous recombination	0.00E+00
2	GO:0042407: cristae formation	0.00E+00
3	GO:0019379: sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)	0.00E+00
4	GO:0031222: arabinan catabolic process	0.00E+00
5	GO:0061157: mRNA destabilization	0.00E+00
6	GO:0043392: negative regulation of DNA binding	0.00E+00
7	GO:0042793: transcription from plastid promoter	1.10E-04
8	GO:2000033: regulation of seed dormancy process	1.51E-04
9	GO:0005980: glycogen catabolic process	2.65E-04
10	GO:0030198: extracellular matrix organization	2.65E-04
11	GO:0046520: sphingoid biosynthetic process	2.65E-04
12	GO:0010480: microsporocyte differentiation	2.65E-04
13	GO:0043007: maintenance of rDNA	2.65E-04
14	GO:0015904: tetracycline transport	2.65E-04
15	GO:0000023: maltose metabolic process	2.65E-04
16	GO:0000025: maltose catabolic process	2.65E-04
17	GO:0006423: cysteinyl-tRNA aminoacylation	5.83E-04
18	GO:0006741: NADP biosynthetic process	5.83E-04
19	GO:0009629: response to gravity	5.83E-04
20	GO:0019388: galactose catabolic process	5.83E-04
21	GO:0007154: cell communication	5.83E-04
22	GO:0018026: peptidyl-lysine monomethylation	5.83E-04
23	GO:0071497: cellular response to freezing	5.83E-04
24	GO:0090342: regulation of cell aging	5.83E-04
25	GO:0031648: protein destabilization	5.83E-04
26	GO:0006568: tryptophan metabolic process	5.83E-04
27	GO:0071452: cellular response to singlet oxygen	5.83E-04
28	GO:0005983: starch catabolic process	6.85E-04
29	GO:0010102: lateral root morphogenesis	7.76E-04
30	GO:0006006: glucose metabolic process	7.76E-04
31	GO:0016255: attachment of GPI anchor to protein	9.47E-04
32	GO:0019674: NAD metabolic process	9.47E-04
33	GO:0033591: response to L-ascorbic acid	9.47E-04
34	GO:0019419: sulfate reduction	9.47E-04
35	GO:0043433: negative regulation of sequence-specific DNA binding transcription factor activity	1.35E-03
36	GO:0009590: detection of gravity	1.35E-03
37	GO:0010321: regulation of vegetative phase change	1.35E-03
38	GO:0019363: pyridine nucleotide biosynthetic process	1.35E-03
39	GO:0006221: pyrimidine nucleotide biosynthetic process	1.81E-03
40	GO:1902347: response to strigolactone	1.81E-03
41	GO:0042938: dipeptide transport	1.81E-03
42	GO:1901141: regulation of lignin biosynthetic process	1.81E-03
43	GO:0042274: ribosomal small subunit biogenesis	1.81E-03
44	GO:0006857: oligopeptide transport	2.04E-03
45	GO:0018258: protein O-linked glycosylation via hydroxyproline	2.85E-03
46	GO:1902456: regulation of stomatal opening	2.85E-03
47	GO:0010405: arabinogalactan protein metabolic process	2.85E-03
48	GO:0042549: photosystem II stabilization	2.85E-03
49	GO:0009959: negative gravitropism	2.85E-03
50	GO:1901657: glycosyl compound metabolic process	3.30E-03
51	GO:0048509: regulation of meristem development	3.43E-03
52	GO:0030488: tRNA methylation	3.43E-03
53	GO:0010310: regulation of hydrogen peroxide metabolic process	3.43E-03
54	GO:0048437: floral organ development	4.04E-03
55	GO:0010098: suspensor development	4.04E-03
56	GO:0010161: red light signaling pathway	4.04E-03
57	GO:0010027: thylakoid membrane organization	4.19E-03
58	GO:0006508: proteolysis	4.52E-03
59	GO:0009733: response to auxin	4.55E-03
60	GO:0005978: glycogen biosynthetic process	4.69E-03
61	GO:0042255: ribosome assembly	4.69E-03
62	GO:0046620: regulation of organ growth	4.69E-03
63	GO:0006353: DNA-templated transcription, termination	4.69E-03
64	GO:0009690: cytokinin metabolic process	4.69E-03
65	GO:0009704: de-etiolation	4.69E-03
66	GO:0010100: negative regulation of photomorphogenesis	5.37E-03
67	GO:0010099: regulation of photomorphogenesis	5.37E-03
68	GO:0000160: phosphorelay signal transduction system	5.74E-03
69	GO:0009451: RNA modification	6.06E-03
70	GO:0051865: protein autoubiquitination	6.09E-03
71	GO:0010206: photosystem II repair	6.09E-03
72	GO:0006783: heme biosynthetic process	6.09E-03
73	GO:0000902: cell morphogenesis	6.09E-03
74	GO:1900865: chloroplast RNA modification	6.83E-03
75	GO:0031425: chloroplast RNA processing	6.83E-03
76	GO:0009638: phototropism	6.83E-03
77	GO:0043067: regulation of programmed cell death	6.83E-03
78	GO:0000103: sulfate assimilation	7.61E-03
79	GO:0010629: negative regulation of gene expression	7.61E-03
80	GO:0010162: seed dormancy process	7.61E-03
81	GO:0006631: fatty acid metabolic process	8.24E-03
82	GO:0009773: photosynthetic electron transport in photosystem I	8.42E-03
83	GO:0009073: aromatic amino acid family biosynthetic process	8.42E-03
84	GO:0048229: gametophyte development	8.42E-03
85	GO:0010015: root morphogenesis	8.42E-03
86	GO:0009640: photomorphogenesis	8.94E-03
87	GO:0009734: auxin-activated signaling pathway	9.07E-03
88	GO:0015706: nitrate transport	9.26E-03
89	GO:0012501: programmed cell death	9.26E-03
90	GO:0010628: positive regulation of gene expression	1.01E-02
91	GO:0010075: regulation of meristem growth	1.01E-02
92	GO:0009767: photosynthetic electron transport chain	1.01E-02
93	GO:0010588: cotyledon vascular tissue pattern formation	1.01E-02
94	GO:0006855: drug transmembrane transport	1.04E-02
95	GO:0010020: chloroplast fission	1.10E-02
96	GO:0009266: response to temperature stimulus	1.10E-02
97	GO:0009934: regulation of meristem structural organization	1.10E-02
98	GO:0090351: seedling development	1.20E-02
99	GO:0009736: cytokinin-activated signaling pathway	1.21E-02
100	GO:0010187: negative regulation of seed germination	1.39E-02
101	GO:0019344: cysteine biosynthetic process	1.39E-02
102	GO:0048511: rhythmic process	1.59E-02
103	GO:0006730: one-carbon metabolic process	1.70E-02
104	GO:2000022: regulation of jasmonic acid mediated signaling pathway	1.70E-02
105	GO:0031348: negative regulation of defense response	1.70E-02
106	GO:0045892: negative regulation of transcription, DNA-templated	1.73E-02
107	GO:0009686: gibberellin biosynthetic process	1.81E-02
108	GO:0009793: embryo development ending in seed dormancy	1.85E-02
109	GO:0045492: xylan biosynthetic process	1.92E-02
110	GO:0010091: trichome branching	1.92E-02
111	GO:0016042: lipid catabolic process	2.13E-02
112	GO:0080022: primary root development	2.15E-02
113	GO:0010087: phloem or xylem histogenesis	2.15E-02
114	GO:0010118: stomatal movement	2.15E-02
115	GO:0048653: anther development	2.15E-02
116	GO:0010305: leaf vascular tissue pattern formation	2.26E-02
117	GO:0010197: polar nucleus fusion	2.26E-02
118	GO:0010182: sugar mediated signaling pathway	2.26E-02
119	GO:0009741: response to brassinosteroid	2.26E-02
120	GO:0009960: endosperm development	2.26E-02
121	GO:0009058: biosynthetic process	2.28E-02
122	GO:0042752: regulation of circadian rhythm	2.38E-02
123	GO:0019252: starch biosynthetic process	2.51E-02
124	GO:0071554: cell wall organization or biogenesis	2.63E-02
125	GO:0010583: response to cyclopentenone	2.76E-02
126	GO:0032502: developmental process	2.76E-02
127	GO:0030163: protein catabolic process	2.88E-02
128	GO:0010252: auxin homeostasis	3.02E-02
129	GO:0009828: plant-type cell wall loosening	3.02E-02
130	GO:0009567: double fertilization forming a zygote and endosperm	3.02E-02
131	GO:0009739: response to gibberellin	3.33E-02
132	GO:0010029: regulation of seed germination	3.56E-02
133	GO:0008380: RNA splicing	3.56E-02
134	GO:0009607: response to biotic stimulus	3.56E-02
135	GO:0015995: chlorophyll biosynthetic process	3.84E-02
136	GO:0009735: response to cytokinin	4.03E-02
137	GO:0006351: transcription, DNA-templated	4.09E-02
138	GO:0009416: response to light stimulus	4.49E-02
139	GO:0009631: cold acclimation	4.58E-02
140	GO:0009658: chloroplast organization	4.60E-02

Rank	GO Term	Adjusted P value
1	GO:0071633: dihydroceramidase activity	0.00E+00
2	GO:0047661: amino-acid racemase activity	0.00E+00
3	GO:0097100: supercoiled DNA binding	0.00E+00
4	GO:0005201: extracellular matrix structural constituent	0.00E+00
5	GO:0005363: maltose transmembrane transporter activity	0.00E+00
6	GO:0010313: phytochrome binding	2.65E-04
7	GO:0004134: 4-alpha-glucanotransferase activity	2.65E-04
8	GO:0004645: phosphorylase activity	2.65E-04
9	GO:0009374: biotin binding	2.65E-04
10	GO:0042736: NADH kinase activity	2.65E-04
11	GO:0000170: sphingosine hydroxylase activity	2.65E-04
12	GO:0050139: nicotinate-N-glucosyltransferase activity	2.65E-04
13	GO:0004425: indole-3-glycerol-phosphate synthase activity	2.65E-04
14	GO:0008184: glycogen phosphorylase activity	2.65E-04
15	GO:0042284: sphingolipid delta-4 desaturase activity	5.83E-04
16	GO:0008493: tetracycline transporter activity	5.83E-04
17	GO:0009973: adenylyl-sulfate reductase activity	5.83E-04
18	GO:0004604: phosphoadenylyl-sulfate reductase (thioredoxin) activity	5.83E-04
19	GO:0004614: phosphoglucomutase activity	5.83E-04
20	GO:0033741: adenylyl-sulfate reductase (glutathione) activity	5.83E-04
21	GO:0004817: cysteine-tRNA ligase activity	5.83E-04
22	GO:0070330: aromatase activity	9.47E-04
23	GO:0009041: uridylate kinase activity	1.35E-03
24	GO:0046556: alpha-L-arabinofuranosidase activity	1.81E-03
25	GO:0016279: protein-lysine N-methyltransferase activity	1.81E-03
26	GO:0042936: dipeptide transporter activity	1.81E-03
27	GO:0003727: single-stranded RNA binding	1.87E-03
28	GO:0016298: lipase activity	1.96E-03
29	GO:0018685: alkane 1-monooxygenase activity	2.31E-03
30	GO:0003989: acetyl-CoA carboxylase activity	2.31E-03
31	GO:0080030: methyl indole-3-acetate esterase activity	2.85E-03
32	GO:1990714: hydroxyproline O-galactosyltransferase activity	2.85E-03
33	GO:0000156: phosphorelay response regulator activity	3.30E-03
34	GO:0016832: aldehyde-lyase activity	3.43E-03
35	GO:0045156: electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity	3.43E-03
36	GO:0005200: structural constituent of cytoskeleton	3.73E-03
37	GO:0005215: transporter activity	4.41E-03
38	GO:0102483: scopolin beta-glucosidase activity	4.93E-03
39	GO:0003951: NAD+ kinase activity	5.37E-03
40	GO:0008173: RNA methyltransferase activity	5.37E-03
41	GO:0015238: drug transmembrane transporter activity	5.74E-03
42	GO:0004519: endonuclease activity	6.13E-03
43	GO:0016614: oxidoreductase activity, acting on CH-OH group of donors	6.32E-03
44	GO:0008422: beta-glucosidase activity	7.57E-03
45	GO:0000976: transcription regulatory region sequence-specific DNA binding	9.26E-03
46	GO:0043621: protein self-association	9.68E-03
47	GO:0004089: carbonate dehydratase activity	1.01E-02
48	GO:0031072: heat shock protein binding	1.01E-02
49	GO:0016788: hydrolase activity, acting on ester bonds	1.05E-02
50	GO:0004190: aspartic-type endopeptidase activity	1.20E-02
51	GO:0005528: FK506 binding	1.39E-02
52	GO:0005345: purine nucleobase transmembrane transporter activity	1.49E-02
53	GO:0004176: ATP-dependent peptidase activity	1.59E-02
54	GO:0033612: receptor serine/threonine kinase binding	1.59E-02
55	GO:0004252: serine-type endopeptidase activity	2.40E-02
56	GO:0004518: nuclease activity	2.76E-02
57	GO:0015297: antiporter activity	2.85E-02
58	GO:0016671: oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor	2.88E-02
59	GO:0016759: cellulose synthase activity	3.02E-02
60	GO:0008237: metallopeptidase activity	3.15E-02
61	GO:0016413: O-acetyltransferase activity	3.28E-02
62	GO:0016757: transferase activity, transferring glycosyl groups	3.78E-02
63	GO:0008236: serine-type peptidase activity	3.98E-02
64	GO:0008168: methyltransferase activity	4.43E-02
65	GO:0004222: metalloendopeptidase activity	4.43E-02
66	GO:0000287: magnesium ion binding	4.51E-02
67	GO:0016706: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	4.88E-02

Rank	GO Term	Adjusted P value
1	GO:0009507: chloroplast	3.91E-04
2	GO:0000427: plastid-encoded plastid RNA polymerase complex	5.83E-04
3	GO:0009508: plastid chromosome	7.76E-04
4	GO:0009317: acetyl-CoA carboxylase complex	9.47E-04
5	GO:0042765: GPI-anchor transamidase complex	9.47E-04
6	GO:0009534: chloroplast thylakoid	1.30E-03
7	GO:0009654: photosystem II oxygen evolving complex	1.32E-03
8	GO:0009544: chloroplast ATP synthase complex	1.81E-03
9	GO:0019898: extrinsic component of membrane	2.71E-03
10	GO:0009295: nucleoid	3.73E-03
11	GO:0009570: chloroplast stroma	4.60E-03
12	GO:0009501: amyloplast	4.69E-03
13	GO:0010598: NAD(P)H dehydrogenase complex (plastoquinone)	6.09E-03
14	GO:0005578: proteinaceous extracellular matrix	1.01E-02
15	GO:0015629: actin cytoskeleton	1.81E-02
16	GO:0009543: chloroplast thylakoid lumen	2.16E-02
17	GO:0005770: late endosome	2.26E-02
18	GO:0043231: intracellular membrane-bounded organelle	2.50E-02
19	GO:0010319: stromule	3.15E-02